data_6HQG # _model_server_result.job_id LXo17yEL2S3hmAcGUez1Jw _model_server_result.datetime_utc '2024-11-15 10:52:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hqg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6HQG # _exptl.entry_id 6HQG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.6 _cell.angle_gamma 90 _cell.entry_id 6HQG _cell.length_a 105.464 _cell.length_b 89.207 _cell.length_c 201.82 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HQG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 214 B CYS 214 1_555 D SG CYS 214 D CYS 214 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc1 A SG CYS 373 A CYS 373 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 B SG CYS 373 B CYS 373 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc3 C SG CYS 373 C CYS 373 1_555 G FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc4 D SG CYS 373 D CYS 373 1_555 H FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6HQG _atom_sites.fract_transf_matrix[1][1] 0.009482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001098 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 501 517 HEM HEM . F 2 HEM B 1 501 517 HEM HEM . G 2 HEM C 1 501 517 HEM HEM . H 2 HEM D 1 501 517 HEM HEM . I 3 HOH A 1 601 20 HOH HOH . I 3 HOH A 2 602 18 HOH HOH . I 3 HOH A 3 603 16 HOH HOH . I 3 HOH A 4 604 28 HOH HOH . I 3 HOH A 5 605 15 HOH HOH . I 3 HOH A 6 606 21 HOH HOH . I 3 HOH A 7 607 3 HOH HOH . I 3 HOH A 8 608 27 HOH HOH . J 3 HOH B 1 601 11 HOH HOH . J 3 HOH B 2 602 5 HOH HOH . J 3 HOH B 3 603 25 HOH HOH . J 3 HOH B 4 604 12 HOH HOH . J 3 HOH B 5 605 8 HOH HOH . J 3 HOH B 6 606 7 HOH HOH . J 3 HOH B 7 607 23 HOH HOH . J 3 HOH B 8 608 4 HOH HOH . J 3 HOH B 9 609 22 HOH HOH . K 3 HOH C 1 601 1 HOH HOH . K 3 HOH C 2 602 9 HOH HOH . K 3 HOH C 3 603 30 HOH HOH . K 3 HOH C 4 604 19 HOH HOH . K 3 HOH C 5 605 10 HOH HOH . K 3 HOH C 6 606 17 HOH HOH . K 3 HOH C 7 607 29 HOH HOH . L 3 HOH D 1 601 13 HOH HOH . L 3 HOH D 2 602 14 HOH HOH . L 3 HOH D 3 603 24 HOH HOH . L 3 HOH D 4 604 26 HOH HOH . L 3 HOH D 5 605 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 15.718 21.718 179.135 1 33.86 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . E 2 13.402 20.192 175.177 1 32.34 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . E 2 11.964 16.189 177.536 1 31.03 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . E 2 13.648 18.109 181.607 1 35.3 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . E 2 15.25 21.608 177.851 1 33.18 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . E 2 15.541 22.527 176.824 1 33.71 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . E 2 14.88 22.111 175.735 1 33.58 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . E 2 14.17 20.937 176.061 1 32.47 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . E 2 14.925 22.792 174.391 1 35.92 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . E 2 16.439 23.754 176.874 1 36.7 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . E 2 17.804 23.56 176.158 1 34.65 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . E 2 18.645 24.838 176.126 1 34.68 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . E 2 19.723 24.851 175.484 1 31.95 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . E 2 18.303 25.904 176.714 1 34.45 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . E 2 12.835 18.942 175.495 1 32.85 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . E 2 12.192 18.108 174.534 1 32.51 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . E 2 11.774 16.966 175.182 1 31.57 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . E 2 12.214 17.144 176.576 1 31.38 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . E 2 11.995 18.479 173.091 1 34.05 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . E 2 11.065 15.741 174.734 1 32.58 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . E 2 10.728 15.442 173.491 1 33.62 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . E 2 12.278 16.34 178.852 1 29.39 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . E 2 12.071 15.388 179.838 1 29.02 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . E 2 12.537 15.917 181.024 1 31.98 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . E 2 13.049 17.224 180.7 1 33.97 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . E 2 11.434 14.049 179.645 1 29.67 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . E 2 12.561 15.335 182.406 1 30.72 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . E 2 12.122 14.134 182.733 1 29.68 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . E 2 14.367 19.257 181.257 1 33.68 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . E 2 15.106 20.076 182.263 1 32.54 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . E 2 15.687 21.087 181.554 1 33.44 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . E 2 15.304 20.849 180.14 1 33.92 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . E 2 15.208 19.844 183.757 1 29.67 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . E 2 16.599 22.201 182.067 1 32.59 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . E 2 18.071 21.725 181.916 1 33.88 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . E 2 19.116 22.69 182.468 1 33.9 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . E 2 20.316 22.333 182.628 1 31.62 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . E 2 18.784 23.857 182.778 1 34.85 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . E 2 14.398 20.636 177.374 1 32.49 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . E 2 12.835 18.328 176.701 1 33.14 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . E 2 12.876 17.435 179.365 1 31.43 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . E 2 14.504 19.76 180.021 1 32.74 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . E 2 13.722 19.103 178.453 1 29.05 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #