data_6HQG
#
_model_server_result.job_id            2qSWd2vXxc6pmR_6O31hDw 
_model_server_result.datetime_utc      '2024-11-15 10:55:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hqg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6HQG 
#
_exptl.entry_id    6HQG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.6 
_cell.angle_gamma         90 
_cell.entry_id            6HQG 
_cell.length_a            105.464 
_cell.length_b            89.207 
_cell.length_c            201.82 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HQG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 214 B CYS 214 1_555 D SG CYS 214 D CYS 214 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc1 A SG CYS 373 A CYS 373 1_555 E FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc2 B SG CYS 373 B CYS 373 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc3 C SG CYS 373 C CYS 373 1_555 G FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc4 D SG CYS 373 D CYS 373 1_555 H FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     6HQG 
_atom_sites.fract_transf_matrix[1][1]    0.009482 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001098 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01121 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 501 517 HEM HEM . 
F 2 HEM B 1 501 517 HEM HEM . 
G 2 HEM C 1 501 517 HEM HEM . 
H 2 HEM D 1 501 517 HEM HEM . 
I 3 HOH A 1 601 20 HOH HOH . 
I 3 HOH A 2 602 18 HOH HOH . 
I 3 HOH A 3 603 16 HOH HOH . 
I 3 HOH A 4 604 28 HOH HOH . 
I 3 HOH A 5 605 15 HOH HOH . 
I 3 HOH A 6 606 21 HOH HOH . 
I 3 HOH A 7 607 3 HOH HOH . 
I 3 HOH A 8 608 27 HOH HOH . 
J 3 HOH B 1 601 11 HOH HOH . 
J 3 HOH B 2 602 5 HOH HOH . 
J 3 HOH B 3 603 25 HOH HOH . 
J 3 HOH B 4 604 12 HOH HOH . 
J 3 HOH B 5 605 8 HOH HOH . 
J 3 HOH B 6 606 7 HOH HOH . 
J 3 HOH B 7 607 23 HOH HOH . 
J 3 HOH B 8 608 4 HOH HOH . 
J 3 HOH B 9 609 22 HOH HOH . 
K 3 HOH C 1 601 1 HOH HOH . 
K 3 HOH C 2 602 9 HOH HOH . 
K 3 HOH C 3 603 30 HOH HOH . 
K 3 HOH C 4 604 19 HOH HOH . 
K 3 HOH C 5 605 10 HOH HOH . 
K 3 HOH C 6 606 17 HOH HOH . 
K 3 HOH C 7 607 29 HOH HOH . 
L 3 HOH D 1 601 13 HOH HOH . 
L 3 HOH D 2 602 14 HOH HOH . 
L 3 HOH D 3 603 24 HOH HOH . 
L 3 HOH D 4 604 26 HOH HOH . 
L 3 HOH D 5 605 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 2 20.674 68.625 123.608 1 26.37 ? CHA HEM 501 B 1 
HETATM 2 C CHB HEM . . . F 2 17.58 70.267 126.959 1 28.2 ? CHB HEM 501 B 1 
HETATM 3 C CHC HEM . . . F 2 16.916 74.317 124.349 1 28.59 ? CHC HEM 501 B 1 
HETATM 4 C CHD HEM . . . F 2 19.247 72.221 120.74 1 27.15 ? CHD HEM 501 B 1 
HETATM 5 C C1A HEM . . . F 2 19.939 68.731 124.765 1 26.44 ? C1A HEM 501 B 1 
HETATM 6 C C2A HEM . . . F 2 19.939 67.794 125.825 1 23.98 ? C2A HEM 501 B 1 
HETATM 7 C C3A HEM . . . F 2 19.058 68.237 126.76 1 24.41 ? C3A HEM 501 B 1 
HETATM 8 C C4A HEM . . . F 2 18.522 69.469 126.294 1 27.06 ? C4A HEM 501 B 1 
HETATM 9 C CMA HEM . . . F 2 18.698 67.579 128.061 1 23.82 ? CMA HEM 501 B 1 
HETATM 10 C CAA HEM . . . F 2 20.754 66.542 125.883 1 24.04 ? CAA HEM 501 B 1 
HETATM 11 C CBA HEM . . . F 2 21.881 66.634 126.925 1 24.82 ? CBA HEM 501 B 1 
HETATM 12 C CGA HEM . . . F 2 22.64 65.317 127.156 1 25.09 ? CGA HEM 501 B 1 
HETATM 13 O O1A HEM . . . F 2 23.449 65.262 128.123 1 22.57 ? O1A HEM 501 B 1 
HETATM 14 O O2A HEM . . . F 2 22.486 64.292 126.405 1 26.19 ? O2A HEM 501 B 1 
HETATM 15 C C1B HEM . . . F 2 17.147 71.546 126.54 1 27.94 ? C1B HEM 501 B 1 
HETATM 16 C C2B HEM . . . F 2 16.358 72.44 127.338 1 26.33 ? C2B HEM 501 B 1 
HETATM 17 C C3B HEM . . . F 2 16.157 73.575 126.616 1 27.1 ? C3B HEM 501 B 1 
HETATM 18 C C4B HEM . . . F 2 16.883 73.353 125.347 1 28.68 ? C4B HEM 501 B 1 
HETATM 19 C CMB HEM . . . F 2 15.806 72.146 128.694 1 26.34 ? CMB HEM 501 B 1 
HETATM 20 C CAB HEM . . . F 2 15.458 74.844 126.92 1 28.2 ? CAB HEM 501 B 1 
HETATM 21 C CBB HEM . . . F 2 14.955 75.191 128.108 1 29.75 ? CBB HEM 501 B 1 
HETATM 22 C C1C HEM . . . F 2 17.497 74.119 123.119 1 28.04 ? C1C HEM 501 B 1 
HETATM 23 C C2C HEM . . . F 2 17.557 75.069 122.082 1 27.16 ? C2C HEM 501 B 1 
HETATM 24 C C3C HEM . . . F 2 18.215 74.46 121.015 1 27.68 ? C3C HEM 501 B 1 
HETATM 25 C C4C HEM . . . F 2 18.535 73.138 121.462 1 28.05 ? C4C HEM 501 B 1 
HETATM 26 C CMC HEM . . . F 2 16.974 76.464 122.136 1 26.97 ? CMC HEM 501 B 1 
HETATM 27 C CAC HEM . . . F 2 18.55 74.972 119.653 1 27.2 ? CAC HEM 501 B 1 
HETATM 28 C CBC HEM . . . F 2 18.19 76.162 119.185 1 27.93 ? CBC HEM 501 B 1 
HETATM 29 C C1D HEM . . . F 2 19.845 71.094 121.274 1 26.06 ? C1D HEM 501 B 1 
HETATM 30 C C2D HEM . . . F 2 20.77 70.299 120.474 1 27.73 ? C2D HEM 501 B 1 
HETATM 31 C C3D HEM . . . F 2 21.196 69.296 121.28 1 28.1 ? C3D HEM 501 B 1 
HETATM 32 C C4D HEM . . . F 2 20.507 69.502 122.556 1 26.23 ? C4D HEM 501 B 1 
HETATM 33 C CMD HEM . . . F 2 21.192 70.541 119.03 1 28.19 ? CMD HEM 501 B 1 
HETATM 34 C CAD HEM . . . F 2 22.174 68.184 120.913 1 28.49 ? CAD HEM 501 B 1 
HETATM 35 C CBD HEM . . . F 2 23.618 68.562 121.243 1 30.19 ? CBD HEM 501 B 1 
HETATM 36 C CGD HEM . . . F 2 24.518 67.346 121.105 1 33.68 ? CGD HEM 501 B 1 
HETATM 37 O O1D HEM . . . F 2 25.791 67.417 121.153 1 30.73 ? O1D HEM 501 B 1 
HETATM 38 O O2D HEM . . . F 2 23.954 66.244 120.904 1 38.62 ? O2D HEM 501 B 1 
HETATM 39 N NA HEM . . . F 2 19.058 69.744 125.065 1 27.09 ? NA HEM 501 B 1 
HETATM 40 N NB HEM . . . F 2 17.432 72.118 125.361 1 29.63 ? NB HEM 501 B 1 
HETATM 41 N NC HEM . . . F 2 18.093 72.956 122.738 1 28.55 ? NC HEM 501 B 1 
HETATM 42 N ND HEM . . . F 2 19.737 70.585 122.487 1 26.2 ? ND HEM 501 B 1 
HETATM 43 FE FE HEM . . . F 2 18.614 71.223 123.827 1 30.48 ? FE HEM 501 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#