data_6HQH # _model_server_result.job_id X4qkzHUjY8VpP-GoLd-ULQ _model_server_result.datetime_utc '2025-01-05 03:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6HQH # _exptl.entry_id 6HQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.285 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Deoxyfructosylglutamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.81 _cell.angle_gamma 90 _cell.entry_id 6HQH _cell.length_a 40.34 _cell.length_b 63.69 _cell.length_c 43.75 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N2 O8' _chem_comp.formula_weight 308.285 _chem_comp.id SNW _chem_comp.mon_nstd_flag . _chem_comp.name Deoxyfructosylglutamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms santhopine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO CAH SNW sing 286 n n CAO OAN SNW sing 287 n n CAH CAG SNW sing 288 n n CAH OAI SNW sing 289 n n CAG OAC SNW sing 290 n n CAG CAF SNW sing 291 n n OAQ CAM SNW sing 292 n n OAN CAM SNW sing 293 n n NE2 CD SNW sing 294 n n CAM CAF SNW sing 295 n n CAM CAL SNW sing 296 n n CAF OAB SNW sing 297 n n CD CG SNW sing 298 n n CD OE1 SNW doub 299 n n CG CB SNW sing 300 n n O C SNW doub 301 n n N CAL SNW sing 302 n n N CA SNW sing 303 n n C CA SNW sing 304 n n C OXT SNW sing 305 n n CA CB SNW sing 306 n n OAB H1 SNW sing 307 n n CAF H2 SNW sing 308 n n CAG H3 SNW sing 309 n n OAC H4 SNW sing 310 n n CAH H5 SNW sing 311 n n OAI H6 SNW sing 312 n n CAO H7 SNW sing 313 n n CAO H8 SNW sing 314 n n OAQ H9 SNW sing 315 n n CAL H10 SNW sing 316 n n CAL H11 SNW sing 317 n n N H12 SNW sing 318 n n CA H14 SNW sing 319 n n CB H15 SNW sing 320 n n CG H16 SNW sing 321 n n NE2 H17 SNW sing 322 n n NE2 H18 SNW sing 323 n n OXT H19 SNW sing 324 n n CB H13 SNW sing 325 n n CG H20 SNW sing 326 n n # _atom_sites.entry_id 6HQH _atom_sites.fract_transf_matrix[1][1] 0.024789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006554 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SNW A 1 301 1 SNW DRG . C 3 EDO A 1 302 4 EDO EDO . D 3 EDO A 1 303 6 EDO EDO . E 3 EDO A 1 304 7 EDO EDO . F 3 EDO A 1 305 8 EDO EDO . G 3 EDO A 1 306 10 EDO EDO . H 3 EDO A 1 307 11 EDO EDO . I 4 HOH A 1 401 174 HOH HOH . I 4 HOH A 2 402 227 HOH HOH . I 4 HOH A 3 403 206 HOH HOH . I 4 HOH A 4 404 30 HOH HOH . I 4 HOH A 5 405 140 HOH HOH . I 4 HOH A 6 406 99 HOH HOH . I 4 HOH A 7 407 127 HOH HOH . I 4 HOH A 8 408 126 HOH HOH . I 4 HOH A 9 409 104 HOH HOH . I 4 HOH A 10 410 110 HOH HOH . I 4 HOH A 11 411 90 HOH HOH . I 4 HOH A 12 412 141 HOH HOH . I 4 HOH A 13 413 137 HOH HOH . I 4 HOH A 14 414 146 HOH HOH . I 4 HOH A 15 415 24 HOH HOH . I 4 HOH A 16 416 48 HOH HOH . I 4 HOH A 17 417 198 HOH HOH . I 4 HOH A 18 418 23 HOH HOH . I 4 HOH A 19 419 25 HOH HOH . I 4 HOH A 20 420 106 HOH HOH . I 4 HOH A 21 421 83 HOH HOH . I 4 HOH A 22 422 241 HOH HOH . I 4 HOH A 23 423 100 HOH HOH . I 4 HOH A 24 424 60 HOH HOH . I 4 HOH A 25 425 3 HOH HOH . I 4 HOH A 26 426 58 HOH HOH . I 4 HOH A 27 427 124 HOH HOH . I 4 HOH A 28 428 1 HOH HOH . I 4 HOH A 29 429 43 HOH HOH . I 4 HOH A 30 430 13 HOH HOH . I 4 HOH A 31 431 149 HOH HOH . I 4 HOH A 32 432 155 HOH HOH . I 4 HOH A 33 433 75 HOH HOH . I 4 HOH A 34 434 94 HOH HOH . I 4 HOH A 35 435 31 HOH HOH . I 4 HOH A 36 436 160 HOH HOH . I 4 HOH A 37 437 74 HOH HOH . I 4 HOH A 38 438 152 HOH HOH . I 4 HOH A 39 439 201 HOH HOH . I 4 HOH A 40 440 97 HOH HOH . I 4 HOH A 41 441 79 HOH HOH . I 4 HOH A 42 442 77 HOH HOH . I 4 HOH A 43 443 15 HOH HOH . I 4 HOH A 44 444 20 HOH HOH . I 4 HOH A 45 445 108 HOH HOH . I 4 HOH A 46 446 162 HOH HOH . I 4 HOH A 47 447 131 HOH HOH . I 4 HOH A 48 448 167 HOH HOH . I 4 HOH A 49 449 170 HOH HOH . I 4 HOH A 50 450 205 HOH HOH . I 4 HOH A 51 451 154 HOH HOH . I 4 HOH A 52 452 123 HOH HOH . I 4 HOH A 53 453 232 HOH HOH . I 4 HOH A 54 454 128 HOH HOH . I 4 HOH A 55 455 161 HOH HOH . I 4 HOH A 56 456 49 HOH HOH . I 4 HOH A 57 457 72 HOH HOH . I 4 HOH A 58 458 16 HOH HOH . I 4 HOH A 59 459 116 HOH HOH . I 4 HOH A 60 460 42 HOH HOH . I 4 HOH A 61 461 6 HOH HOH . I 4 HOH A 62 462 71 HOH HOH . I 4 HOH A 63 463 223 HOH HOH . I 4 HOH A 64 464 115 HOH HOH . I 4 HOH A 65 465 45 HOH HOH . I 4 HOH A 66 466 107 HOH HOH . I 4 HOH A 67 467 143 HOH HOH . I 4 HOH A 68 468 29 HOH HOH . I 4 HOH A 69 469 11 HOH HOH . I 4 HOH A 70 470 2 HOH HOH . I 4 HOH A 71 471 200 HOH HOH . I 4 HOH A 72 472 192 HOH HOH . I 4 HOH A 73 473 203 HOH HOH . I 4 HOH A 74 474 156 HOH HOH . I 4 HOH A 75 475 119 HOH HOH . I 4 HOH A 76 476 7 HOH HOH . I 4 HOH A 77 477 91 HOH HOH . I 4 HOH A 78 478 14 HOH HOH . I 4 HOH A 79 479 218 HOH HOH . I 4 HOH A 80 480 225 HOH HOH . I 4 HOH A 81 481 36 HOH HOH . I 4 HOH A 82 482 151 HOH HOH . I 4 HOH A 83 483 114 HOH HOH . I 4 HOH A 84 484 240 HOH HOH . I 4 HOH A 85 485 208 HOH HOH . I 4 HOH A 86 486 32 HOH HOH . I 4 HOH A 87 487 157 HOH HOH . I 4 HOH A 88 488 44 HOH HOH . I 4 HOH A 89 489 84 HOH HOH . I 4 HOH A 90 490 215 HOH HOH . I 4 HOH A 91 491 171 HOH HOH . I 4 HOH A 92 492 188 HOH HOH . I 4 HOH A 93 493 101 HOH HOH . I 4 HOH A 94 494 184 HOH HOH . I 4 HOH A 95 495 9 HOH HOH . I 4 HOH A 96 496 230 HOH HOH . I 4 HOH A 97 497 125 HOH HOH . I 4 HOH A 98 498 166 HOH HOH . I 4 HOH A 99 499 176 HOH HOH . I 4 HOH A 100 500 27 HOH HOH . I 4 HOH A 101 501 18 HOH HOH . I 4 HOH A 102 502 226 HOH HOH . I 4 HOH A 103 503 92 HOH HOH . I 4 HOH A 104 504 19 HOH HOH . I 4 HOH A 105 505 172 HOH HOH . I 4 HOH A 106 506 34 HOH HOH . I 4 HOH A 107 507 102 HOH HOH . I 4 HOH A 108 508 136 HOH HOH . I 4 HOH A 109 509 10 HOH HOH . I 4 HOH A 110 510 5 HOH HOH . I 4 HOH A 111 511 4 HOH HOH . I 4 HOH A 112 512 121 HOH HOH . I 4 HOH A 113 513 8 HOH HOH . I 4 HOH A 114 514 35 HOH HOH . I 4 HOH A 115 515 173 HOH HOH . I 4 HOH A 116 516 244 HOH HOH . I 4 HOH A 117 517 139 HOH HOH . I 4 HOH A 118 518 231 HOH HOH . I 4 HOH A 119 519 135 HOH HOH . I 4 HOH A 120 520 180 HOH HOH . I 4 HOH A 121 521 105 HOH HOH . I 4 HOH A 122 522 228 HOH HOH . I 4 HOH A 123 523 181 HOH HOH . I 4 HOH A 124 524 185 HOH HOH . I 4 HOH A 125 525 236 HOH HOH . I 4 HOH A 126 526 224 HOH HOH . I 4 HOH A 127 527 193 HOH HOH . I 4 HOH A 128 528 169 HOH HOH . I 4 HOH A 129 529 59 HOH HOH . I 4 HOH A 130 530 103 HOH HOH . I 4 HOH A 131 531 109 HOH HOH . I 4 HOH A 132 532 93 HOH HOH . I 4 HOH A 133 533 191 HOH HOH . I 4 HOH A 134 534 186 HOH HOH . I 4 HOH A 135 535 182 HOH HOH . I 4 HOH A 136 536 98 HOH HOH . I 4 HOH A 137 537 213 HOH HOH . I 4 HOH A 138 538 39 HOH HOH . I 4 HOH A 139 539 220 HOH HOH . I 4 HOH A 140 540 247 HOH HOH . I 4 HOH A 141 541 196 HOH HOH . I 4 HOH A 142 542 148 HOH HOH . I 4 HOH A 143 543 165 HOH HOH . I 4 HOH A 144 544 190 HOH HOH . I 4 HOH A 145 545 219 HOH HOH . I 4 HOH A 146 546 163 HOH HOH . I 4 HOH A 147 547 238 HOH HOH . I 4 HOH A 148 548 243 HOH HOH . I 4 HOH A 149 549 168 HOH HOH . I 4 HOH A 150 550 69 HOH HOH . I 4 HOH A 151 551 210 HOH HOH . I 4 HOH A 152 552 233 HOH HOH . I 4 HOH A 153 553 96 HOH HOH . I 4 HOH A 154 554 237 HOH HOH . I 4 HOH A 155 555 142 HOH HOH . I 4 HOH A 156 556 112 HOH HOH . I 4 HOH A 157 557 217 HOH HOH . I 4 HOH A 158 558 211 HOH HOH . I 4 HOH A 159 559 202 HOH HOH . I 4 HOH A 160 560 199 HOH HOH . I 4 HOH A 161 561 144 HOH HOH . I 4 HOH A 162 562 158 HOH HOH . I 4 HOH A 163 563 164 HOH HOH . I 4 HOH A 164 564 214 HOH HOH . I 4 HOH A 165 565 207 HOH HOH . I 4 HOH A 166 566 204 HOH HOH . I 4 HOH A 167 567 245 HOH HOH . I 4 HOH A 168 568 235 HOH HOH . I 4 HOH A 169 569 111 HOH HOH . I 4 HOH A 170 570 153 HOH HOH . I 4 HOH A 171 571 187 HOH HOH . I 4 HOH A 172 572 177 HOH HOH . I 4 HOH A 173 573 248 HOH HOH . I 4 HOH A 174 574 82 HOH HOH . I 4 HOH A 175 575 242 HOH HOH . I 4 HOH A 176 576 178 HOH HOH . I 4 HOH A 177 577 239 HOH HOH . I 4 HOH A 178 578 209 HOH HOH . I 4 HOH A 179 579 145 HOH HOH . I 4 HOH A 180 580 229 HOH HOH . I 4 HOH A 181 581 133 HOH HOH . I 4 HOH A 182 582 159 HOH HOH . I 4 HOH A 183 583 129 HOH HOH . I 4 HOH A 184 584 246 HOH HOH . I 4 HOH A 185 585 222 HOH HOH . I 4 HOH A 186 586 38 HOH HOH . I 4 HOH A 187 587 195 HOH HOH . I 4 HOH A 188 588 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB SNW . . . B 2 15.197 63.698 -11.311 1 26.31 ? OAB SNW 301 A 1 HETATM 2 C CAF SNW . . . B 2 16.46 63.767 -11.999 1 27.37 ? CAF SNW 301 A 1 HETATM 3 C CAG SNW . . . B 2 16.464 62.989 -13.21 1 25.12 ? CAG SNW 301 A 1 HETATM 4 O OAC SNW . . . B 2 16.093 61.58 -12.908 1 24.81 ? OAC SNW 301 A 1 HETATM 5 C CAH SNW . . . B 2 17.665 63.051 -13.979 1 27.72 ? CAH SNW 301 A 1 HETATM 6 O OAI SNW . . . B 2 18.734 62.323 -13.335 1 27.13 ? OAI SNW 301 A 1 HETATM 7 C CAO SNW . . . B 2 18.154 64.487 -14.204 1 30.61 ? CAO SNW 301 A 1 HETATM 8 O OAN SNW . . . B 2 18.105 65.262 -13 1 28.1 ? OAN SNW 301 A 1 HETATM 9 C CAM SNW . . . B 2 16.89 65.209 -12.267 1 27.5 ? CAM SNW 301 A 1 HETATM 10 O OAQ SNW . . . B 2 15.923 65.855 -12.961 1 26.65 ? OAQ SNW 301 A 1 HETATM 11 C CAL SNW . . . B 2 17.061 65.976 -10.978 1 24.88 ? CAL SNW 301 A 1 HETATM 12 N N SNW . . . B 2 17.641 67.327 -11.173 1 21.74 ? N SNW 301 A 1 HETATM 13 C CA SNW . . . B 2 17.615 68.179 -9.996 1 19.01 ? CA SNW 301 A 1 HETATM 14 C C SNW . . . B 2 16.27 68.874 -9.941 1 17.64 ? C SNW 301 A 1 HETATM 15 O O SNW . . . B 2 15.511 68.86 -10.919 1 15.77 ? O SNW 301 A 1 HETATM 16 C CB SNW . . . B 2 18.697 69.264 -10.055 1 21.51 ? CB SNW 301 A 1 HETATM 17 C CG SNW . . . B 2 18.826 70.085 -11.31 1 23.85 ? CG SNW 301 A 1 HETATM 18 C CD SNW . . . B 2 19.996 71.027 -11.429 1 28.06 ? CD SNW 301 A 1 HETATM 19 O OE1 SNW . . . B 2 20.529 71.46 -10.421 1 28.53 ? OE1 SNW 301 A 1 HETATM 20 N NE2 SNW . . . B 2 20.474 71.434 -12.712 1 29.06 ? NE2 SNW 301 A 1 HETATM 21 O OXT SNW . . . B 2 15.917 69.515 -8.94 1 15.77 ? OXT SNW 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #