data_6HR3 # _model_server_result.job_id PCj3xh7iiiu_0T0XBMKN4w _model_server_result.datetime_utc '2024-11-22 06:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hr3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6HR3 # _exptl.entry_id 6HR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.703 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURIBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.59 _cell.angle_gamma 90 _cell.entry_id 6HR3 _cell.length_a 42.27 _cell.length_b 41.519 _cell.length_c 72.293 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc2 A NE2 HIS 101 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A ND1 HIS 124 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A O VAL 139 A VAL 135 1_555 E HG HG . A HG 304 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.136 ? metalc ? metalc5 A O GLN 141 A GLN 137 1_555 D HG MBO . A MBO 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.959 ? metalc ? metalc6 A O GLU 209 A GLU 205 1_555 D HG MBO . A MBO 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.033 ? metalc ? metalc7 A SG CYS 210 A CYS 206 1_555 D HG MBO . A MBO 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.384 ? metalc ? metalc8 A SG CYS 210 A CYS 206 1_555 E HG HG . A HG 304 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 F N 4JE . A 4JE 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc10 D HG MBO . A MBO 303 1_555 G O HOH . A HOH 533 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.921 ? metalc ? metalc11 E HG HG . A HG 304 1_555 G O HOH . A HOH 533 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'C7 H5 Hg O2' _chem_comp.formula_weight 321.703 _chem_comp.id MBO _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURIBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG CE1 MBO sing 268 n n CE1 CE2 MBO sing 269 n y CE1 CE6 MBO doub 270 n y CE2 CE3 MBO doub 271 n y CE2 HE2 MBO sing 272 n n CE3 CE4 MBO sing 273 n y CE3 HE3 MBO sing 274 n n CE4 CE5 MBO doub 275 n y CE4 CZ MBO sing 276 n n CE5 CE6 MBO sing 277 n y CE5 HE5 MBO sing 278 n n CE6 HE6 MBO sing 279 n n CZ OZ1 MBO doub 280 n n CZ OZ2 MBO sing 281 n n OZ2 HZ2 MBO sing 282 n n # _atom_sites.entry_id 6HR3 _atom_sites.fract_transf_matrix[1][1] 0.023657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006157 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 BGC A 1 302 1 BGC BGC . D 4 MBO A 1 303 1 MBO BE7 . E 5 HG A 1 304 1 HG HG . F 6 4JE A 1 305 1 4JE S3A . G 7 HOH A 1 401 221 HOH HOH . G 7 HOH A 2 402 256 HOH HOH . G 7 HOH A 3 403 96 HOH HOH . G 7 HOH A 4 404 143 HOH HOH . G 7 HOH A 5 405 49 HOH HOH . G 7 HOH A 6 406 197 HOH HOH . G 7 HOH A 7 407 252 HOH HOH . G 7 HOH A 8 408 248 HOH HOH . G 7 HOH A 9 409 218 HOH HOH . G 7 HOH A 10 410 56 HOH HOH . G 7 HOH A 11 411 273 HOH HOH . G 7 HOH A 12 412 265 HOH HOH . G 7 HOH A 13 413 30 HOH HOH . G 7 HOH A 14 414 205 HOH HOH . G 7 HOH A 15 415 284 HOH HOH . G 7 HOH A 16 416 179 HOH HOH . G 7 HOH A 17 417 190 HOH HOH . G 7 HOH A 18 418 95 HOH HOH . G 7 HOH A 19 419 212 HOH HOH . G 7 HOH A 20 420 180 HOH HOH . G 7 HOH A 21 421 260 HOH HOH . G 7 HOH A 22 422 58 HOH HOH . G 7 HOH A 23 423 168 HOH HOH . G 7 HOH A 24 424 55 HOH HOH . G 7 HOH A 25 425 249 HOH HOH . G 7 HOH A 26 426 120 HOH HOH . G 7 HOH A 27 427 118 HOH HOH . G 7 HOH A 28 428 13 HOH HOH . G 7 HOH A 29 429 213 HOH HOH . G 7 HOH A 30 430 10 HOH HOH . G 7 HOH A 31 431 169 HOH HOH . G 7 HOH A 32 432 53 HOH HOH . G 7 HOH A 33 433 64 HOH HOH . G 7 HOH A 34 434 276 HOH HOH . G 7 HOH A 35 435 302 HOH HOH . G 7 HOH A 36 436 44 HOH HOH . G 7 HOH A 37 437 38 HOH HOH . G 7 HOH A 38 438 11 HOH HOH . G 7 HOH A 39 439 25 HOH HOH . G 7 HOH A 40 440 57 HOH HOH . G 7 HOH A 41 441 181 HOH HOH . G 7 HOH A 42 442 88 HOH HOH . G 7 HOH A 43 443 101 HOH HOH . G 7 HOH A 44 444 231 HOH HOH . G 7 HOH A 45 445 33 HOH HOH . G 7 HOH A 46 446 154 HOH HOH . G 7 HOH A 47 447 294 HOH HOH . G 7 HOH A 48 448 31 HOH HOH . G 7 HOH A 49 449 172 HOH HOH . G 7 HOH A 50 450 207 HOH HOH . G 7 HOH A 51 451 23 HOH HOH . G 7 HOH A 52 452 100 HOH HOH . G 7 HOH A 53 453 67 HOH HOH . G 7 HOH A 54 454 4 HOH HOH . G 7 HOH A 55 455 209 HOH HOH . G 7 HOH A 56 456 254 HOH HOH . G 7 HOH A 57 457 75 HOH HOH . G 7 HOH A 58 458 84 HOH HOH . G 7 HOH A 59 459 170 HOH HOH . G 7 HOH A 60 460 97 HOH HOH . G 7 HOH A 61 461 189 HOH HOH . G 7 HOH A 62 462 90 HOH HOH . G 7 HOH A 63 463 48 HOH HOH . G 7 HOH A 64 464 222 HOH HOH . G 7 HOH A 65 465 279 HOH HOH . G 7 HOH A 66 466 65 HOH HOH . G 7 HOH A 67 467 14 HOH HOH . G 7 HOH A 68 468 82 HOH HOH . G 7 HOH A 69 469 267 HOH HOH . G 7 HOH A 70 470 62 HOH HOH . G 7 HOH A 71 471 47 HOH HOH . G 7 HOH A 72 472 61 HOH HOH . G 7 HOH A 73 473 60 HOH HOH . G 7 HOH A 74 474 69 HOH HOH . G 7 HOH A 75 475 148 HOH HOH . G 7 HOH A 76 476 76 HOH HOH . G 7 HOH A 77 477 94 HOH HOH . G 7 HOH A 78 478 104 HOH HOH . G 7 HOH A 79 479 150 HOH HOH . G 7 HOH A 80 480 19 HOH HOH . G 7 HOH A 81 481 165 HOH HOH . G 7 HOH A 82 482 234 HOH HOH . G 7 HOH A 83 483 16 HOH HOH . G 7 HOH A 84 484 51 HOH HOH . G 7 HOH A 85 485 211 HOH HOH . G 7 HOH A 86 486 83 HOH HOH . G 7 HOH A 87 487 9 HOH HOH . G 7 HOH A 88 488 91 HOH HOH . G 7 HOH A 89 489 102 HOH HOH . G 7 HOH A 90 490 24 HOH HOH . G 7 HOH A 91 491 78 HOH HOH . G 7 HOH A 92 492 261 HOH HOH . G 7 HOH A 93 493 163 HOH HOH . G 7 HOH A 94 494 214 HOH HOH . G 7 HOH A 95 495 52 HOH HOH . G 7 HOH A 96 496 219 HOH HOH . G 7 HOH A 97 497 35 HOH HOH . G 7 HOH A 98 498 5 HOH HOH . G 7 HOH A 99 499 59 HOH HOH . G 7 HOH A 100 500 243 HOH HOH . G 7 HOH A 101 501 241 HOH HOH . G 7 HOH A 102 502 18 HOH HOH . G 7 HOH A 103 503 105 HOH HOH . G 7 HOH A 104 504 50 HOH HOH . G 7 HOH A 105 505 68 HOH HOH . G 7 HOH A 106 506 6 HOH HOH . G 7 HOH A 107 507 89 HOH HOH . G 7 HOH A 108 508 43 HOH HOH . G 7 HOH A 109 509 233 HOH HOH . G 7 HOH A 110 510 26 HOH HOH . G 7 HOH A 111 511 227 HOH HOH . G 7 HOH A 112 512 42 HOH HOH . G 7 HOH A 113 513 201 HOH HOH . G 7 HOH A 114 514 149 HOH HOH . G 7 HOH A 115 515 71 HOH HOH . G 7 HOH A 116 516 34 HOH HOH . G 7 HOH A 117 517 32 HOH HOH . G 7 HOH A 118 518 1 HOH HOH . G 7 HOH A 119 519 239 HOH HOH . G 7 HOH A 120 520 39 HOH HOH . G 7 HOH A 121 521 171 HOH HOH . G 7 HOH A 122 522 245 HOH HOH . G 7 HOH A 123 523 298 HOH HOH . G 7 HOH A 124 524 45 HOH HOH . G 7 HOH A 125 525 36 HOH HOH . G 7 HOH A 126 526 188 HOH HOH . G 7 HOH A 127 527 113 HOH HOH . G 7 HOH A 128 528 3 HOH HOH . G 7 HOH A 129 529 7 HOH HOH . G 7 HOH A 130 530 99 HOH HOH . G 7 HOH A 131 531 46 HOH HOH . G 7 HOH A 132 532 54 HOH HOH . G 7 HOH A 133 533 124 HOH HOH . G 7 HOH A 134 534 114 HOH HOH . G 7 HOH A 135 535 235 HOH HOH . G 7 HOH A 136 536 296 HOH HOH . G 7 HOH A 137 537 272 HOH HOH . G 7 HOH A 138 538 66 HOH HOH . G 7 HOH A 139 539 77 HOH HOH . G 7 HOH A 140 540 155 HOH HOH . G 7 HOH A 141 541 236 HOH HOH . G 7 HOH A 142 542 277 HOH HOH . G 7 HOH A 143 543 116 HOH HOH . G 7 HOH A 144 544 110 HOH HOH . G 7 HOH A 145 545 281 HOH HOH . G 7 HOH A 146 546 29 HOH HOH . G 7 HOH A 147 547 224 HOH HOH . G 7 HOH A 148 548 166 HOH HOH . G 7 HOH A 149 549 182 HOH HOH . G 7 HOH A 150 550 106 HOH HOH . G 7 HOH A 151 551 40 HOH HOH . G 7 HOH A 152 552 108 HOH HOH . G 7 HOH A 153 553 303 HOH HOH . G 7 HOH A 154 554 295 HOH HOH . G 7 HOH A 155 555 92 HOH HOH . G 7 HOH A 156 556 2 HOH HOH . G 7 HOH A 157 557 12 HOH HOH . G 7 HOH A 158 558 191 HOH HOH . G 7 HOH A 159 559 253 HOH HOH . G 7 HOH A 160 560 230 HOH HOH . G 7 HOH A 161 561 240 HOH HOH . G 7 HOH A 162 562 140 HOH HOH . G 7 HOH A 163 563 210 HOH HOH . G 7 HOH A 164 564 115 HOH HOH . G 7 HOH A 165 565 122 HOH HOH . G 7 HOH A 166 566 63 HOH HOH . G 7 HOH A 167 567 275 HOH HOH . G 7 HOH A 168 568 286 HOH HOH . G 7 HOH A 169 569 15 HOH HOH . G 7 HOH A 170 570 290 HOH HOH . G 7 HOH A 171 571 200 HOH HOH . G 7 HOH A 172 572 119 HOH HOH . G 7 HOH A 173 573 80 HOH HOH . G 7 HOH A 174 574 258 HOH HOH . G 7 HOH A 175 575 278 HOH HOH . G 7 HOH A 176 576 37 HOH HOH . G 7 HOH A 177 577 117 HOH HOH . G 7 HOH A 178 578 20 HOH HOH . G 7 HOH A 179 579 237 HOH HOH . G 7 HOH A 180 580 264 HOH HOH . G 7 HOH A 181 581 142 HOH HOH . G 7 HOH A 182 582 28 HOH HOH . G 7 HOH A 183 583 8 HOH HOH . G 7 HOH A 184 584 79 HOH HOH . G 7 HOH A 185 585 251 HOH HOH . G 7 HOH A 186 586 85 HOH HOH . G 7 HOH A 187 587 98 HOH HOH . G 7 HOH A 188 588 297 HOH HOH . G 7 HOH A 189 589 86 HOH HOH . G 7 HOH A 190 590 238 HOH HOH . G 7 HOH A 191 591 247 HOH HOH . G 7 HOH A 192 592 271 HOH HOH . G 7 HOH A 193 593 151 HOH HOH . G 7 HOH A 194 594 177 HOH HOH . G 7 HOH A 195 595 186 HOH HOH . G 7 HOH A 196 596 146 HOH HOH . G 7 HOH A 197 597 274 HOH HOH . G 7 HOH A 198 598 282 HOH HOH . G 7 HOH A 199 599 244 HOH HOH . G 7 HOH A 200 600 70 HOH HOH . G 7 HOH A 201 601 242 HOH HOH . G 7 HOH A 202 602 139 HOH HOH . G 7 HOH A 203 603 291 HOH HOH . G 7 HOH A 204 604 141 HOH HOH . G 7 HOH A 205 605 250 HOH HOH . G 7 HOH A 206 606 206 HOH HOH . G 7 HOH A 207 607 217 HOH HOH . G 7 HOH A 208 608 203 HOH HOH . G 7 HOH A 209 609 93 HOH HOH . G 7 HOH A 210 610 199 HOH HOH . G 7 HOH A 211 611 185 HOH HOH . G 7 HOH A 212 612 157 HOH HOH . G 7 HOH A 213 613 121 HOH HOH . G 7 HOH A 214 614 288 HOH HOH . G 7 HOH A 215 615 300 HOH HOH . G 7 HOH A 216 616 17 HOH HOH . G 7 HOH A 217 617 193 HOH HOH . G 7 HOH A 218 618 27 HOH HOH . G 7 HOH A 219 619 301 HOH HOH . G 7 HOH A 220 620 175 HOH HOH . G 7 HOH A 221 621 187 HOH HOH . G 7 HOH A 222 622 176 HOH HOH . G 7 HOH A 223 623 192 HOH HOH . G 7 HOH A 224 624 208 HOH HOH . G 7 HOH A 225 625 228 HOH HOH . G 7 HOH A 226 626 109 HOH HOH . G 7 HOH A 227 627 216 HOH HOH . G 7 HOH A 228 628 255 HOH HOH . G 7 HOH A 229 629 232 HOH HOH . G 7 HOH A 230 630 178 HOH HOH . G 7 HOH A 231 631 22 HOH HOH . G 7 HOH A 232 632 229 HOH HOH . G 7 HOH A 233 633 159 HOH HOH . G 7 HOH A 234 634 266 HOH HOH . G 7 HOH A 235 635 173 HOH HOH . G 7 HOH A 236 636 225 HOH HOH . G 7 HOH A 237 637 262 HOH HOH . G 7 HOH A 238 638 162 HOH HOH . G 7 HOH A 239 639 304 HOH HOH . G 7 HOH A 240 640 223 HOH HOH . G 7 HOH A 241 641 158 HOH HOH . G 7 HOH A 242 642 21 HOH HOH . G 7 HOH A 243 643 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MBO . A . D 4 -23.237 10.893 24.673 0.7 10.76 ? HG MBO 303 A 1 HETATM 2 C CE1 MBO . A . D 4 -22.498 11.648 26.46 0.7 11.05 ? CE1 MBO 303 A 1 HETATM 3 C CE2 MBO . A . D 4 -22.093 12.975 26.641 0.7 12.6 ? CE2 MBO 303 A 1 HETATM 4 C CE3 MBO . A . D 4 -21.616 13.458 27.869 0.7 12.63 ? CE3 MBO 303 A 1 HETATM 5 C CE4 MBO . A . D 4 -21.542 12.64 28.975 0.7 12.19 ? CE4 MBO 303 A 1 HETATM 6 C CE5 MBO . A . D 4 -21.927 11.31 28.835 0.7 12.35 ? CE5 MBO 303 A 1 HETATM 7 C CE6 MBO . A . D 4 -22.405 10.835 27.583 0.7 12.08 ? CE6 MBO 303 A 1 HETATM 8 C CZ MBO . A . D 4 -21.024 13.208 30.268 0.7 13.71 ? CZ MBO 303 A 1 HETATM 9 O OZ1 MBO . A . D 4 -20.635 14.297 30.337 0.7 14.47 ? OZ1 MBO 303 A 1 HETATM 10 O OZ2 MBO . A . D 4 -21.019 12.369 31.243 0.7 16.19 ? OZ2 MBO 303 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #