data_6HR6 # _model_server_result.job_id UlWfo5pFookZBMUwJkRceg _model_server_result.datetime_utc '2024-11-10 01:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6HR6 # _exptl.entry_id 6HR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.519 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Nitrocefin - open form' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HR6 _cell.length_a 68.68 _cell.length_b 83.272 _cell.length_c 89.102 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 250 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 294 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NEF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NEF _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.543 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H18 N4 O9 S2' _chem_comp.formula_weight 534.519 _chem_comp.id NEF _chem_comp.mon_nstd_flag . _chem_comp.name 'Nitrocefin - open form' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-5-[(E)-2-(2,4-dinitrophenyl)ethenyl]-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 N23 NEF sing 224 n n N23 O27 NEF doub 225 n n N23 C19 NEF sing 226 n n C18 C19 NEF doub 227 n y C18 C17 NEF sing 228 n y C19 C20 NEF sing 229 n y C17 C14 NEF doub 230 n y S12 C11 NEF sing 231 n y S12 C8 NEF sing 232 n y C11 C10 NEF doub 233 n y C20 C21 NEF doub 234 n y C14 C21 NEF sing 235 n y C14 C12 NEF sing 236 n n C8 C7 NEF sing 237 n n C8 C9 NEF doub 238 n y C6 C12 NEF doub 239 e n C6 C4 NEF sing 240 n n C7 C5 NEF sing 241 n n O17 C16 NEF doub 242 n n C10 C9 NEF sing 243 n y C21 N22 NEF sing 244 n n O2 C1 NEF doub 245 n n C4 C15 NEF doub 246 n n C4 C2 NEF sing 247 n n C16 C15 NEF sing 248 n n C16 O18 NEF sing 249 n n N4 C5 NEF sing 250 n n N4 C3 NEF sing 251 n n C15 N14 NEF sing 252 n n C5 O6 NEF doub 253 n n C1 C3 NEF sing 254 n n C2 S19 NEF sing 255 n n N22 O25 NEF doub 256 n n N22 O24 NEF sing 257 n n C3 C13 NEF sing 258 n n N14 C13 NEF sing 259 n n C13 S19 NEF sing 260 n n C2 H1 NEF sing 261 n n C2 H2 NEF sing 262 n n C3 H3 NEF sing 263 n n C6 H5 NEF sing 264 n n C7 H7 NEF sing 265 n n C7 H8 NEF sing 266 n n C11 H9 NEF sing 267 n n C13 H10 NEF sing 268 n n C17 H12 NEF sing 269 n n N4 H14 NEF sing 270 n n C9 H15 NEF sing 271 n n C10 H16 NEF sing 272 n n O18 H19 NEF sing 273 n n C12 H20 NEF sing 274 n n C18 H22 NEF sing 275 n n C20 H23 NEF sing 276 n n C1 OXY NEF sing 277 n n OXY HXY NEF sing 278 n n N14 H4 NEF sing 279 n n # _atom_sites.entry_id 6HR6 _atom_sites.fract_transf_matrix[1][1] 0.01456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NEF A 1 1101 1101 NEF NEF . C 3 HOH A 1 1201 15 HOH HOH . C 3 HOH A 2 1202 1002 HOH HOH . C 3 HOH A 3 1203 1003 HOH HOH . C 3 HOH A 4 1204 1001 HOH HOH . C 3 HOH A 5 1205 11 HOH HOH . C 3 HOH A 6 1206 1006 HOH HOH . C 3 HOH A 7 1207 7 HOH HOH . C 3 HOH A 8 1208 1005 HOH HOH . C 3 HOH A 9 1209 1007 HOH HOH . C 3 HOH A 10 1210 1008 HOH HOH . C 3 HOH A 11 1211 3 HOH HOH . C 3 HOH A 12 1212 13 HOH HOH . C 3 HOH A 13 1213 14 HOH HOH . C 3 HOH A 14 1214 4 HOH HOH . C 3 HOH A 15 1215 10 HOH HOH . C 3 HOH A 16 1216 5 HOH HOH . C 3 HOH A 17 1217 6 HOH HOH . C 3 HOH A 18 1218 8 HOH HOH . C 3 HOH A 19 1219 12 HOH HOH . C 3 HOH A 20 1220 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 NEF . . . B 2 -3.443 0.967 16.716 1 66.4 ? C2 NEF 1101 A 1 HETATM 2 C C3 NEF . . . B 2 -5.698 2.959 17.67 1 54.81 ? C3 NEF 1101 A 1 HETATM 3 C C4 NEF . . . B 2 -2.182 1.721 16.454 1 63.39 ? C4 NEF 1101 A 1 HETATM 4 C C6 NEF . . . B 2 -1.069 1 15.914 1 73.13 ? C6 NEF 1101 A 1 HETATM 5 C C7 NEF . . . B 2 -7.575 0.763 15.338 1 56.68 ? C7 NEF 1101 A 1 HETATM 6 C C8 NEF . . . B 2 -6.615 -0.261 14.824 1 68.91 ? C8 NEF 1101 A 1 HETATM 7 C C11 NEF . . . B 2 -5.069 -2.098 14.569 1 71.45 ? C11 NEF 1101 A 1 HETATM 8 C C13 NEF . . . B 2 -4.306 3.01 18.187 1 55.27 ? C13 NEF 1101 A 1 HETATM 9 C C14 NEF . . . B 2 -0.395 -1.089 14.657 1 93.8 ? C14 NEF 1101 A 1 HETATM 10 C C15 NEF . . . B 2 -2.269 3.083 16.697 1 55.61 ? C15 NEF 1101 A 1 HETATM 11 C C16 NEF . . . B 2 -1.197 4.095 16.347 1 58.27 ? C16 NEF 1101 A 1 HETATM 12 C C17 NEF . . . B 2 -0.953 -1.082 13.385 1 94.98 ? C17 NEF 1101 A 1 HETATM 13 S S19 NEF . . . B 2 -4.112 1.265 18.353 1 56.1 ? S19 NEF 1101 A 1 HETATM 14 C C1 NEF . . . B 2 -5.863 4.463 17.129 1 50.56 ? C1 NEF 1101 A 1 HETATM 15 O O2 NEF . . . B 2 -6.186 4.496 15.894 1 46.72 ? O2 NEF 1101 A 1 HETATM 16 N N4 NEF . . . B 2 -5.965 1.993 16.631 1 56.7 ? N4 NEF 1101 A 1 HETATM 17 C C5 NEF . . . B 2 -7.139 1.401 16.631 1 57.31 ? C5 NEF 1101 A 1 HETATM 18 O O6 NEF . . . B 2 -7.829 1.392 17.634 1 56.23 ? O6 NEF 1101 A 1 HETATM 19 C C9 NEF . . . B 2 -6.138 -0.375 13.546 1 63.97 ? C9 NEF 1101 A 1 HETATM 20 C C10 NEF . . . B 2 -5.304 -1.475 13.418 1 64.66 ? C10 NEF 1101 A 1 HETATM 21 S S12 NEF . . . B 2 -6.004 -1.467 15.82 1 78.26 ? S12 NEF 1101 A 1 HETATM 22 N N14 NEF . . . B 2 -3.389 3.589 17.211 1 49.41 ? N14 NEF 1101 A 1 HETATM 23 O O17 NEF . . . B 2 -1.027 4.945 17.14 1 54.69 ? O17 NEF 1101 A 1 HETATM 24 O O18 NEF . . . B 2 -0.637 3.956 15.307 1 53.1 ? O18 NEF 1101 A 1 HETATM 25 C C12 NEF . . . B 2 -1.013 -0.332 15.75 1 85.66 ? C12 NEF 1101 A 1 HETATM 26 C C18 NEF . . . B 2 -0.398 -1.757 12.317 1 106.5 ? C18 NEF 1101 A 1 HETATM 27 C C19 NEF . . . B 2 0.751 -2.509 12.52 1 107.7 ? C19 NEF 1101 A 1 HETATM 28 C C20 NEF . . . B 2 1.369 -2.581 13.761 1 104.13 ? C20 NEF 1101 A 1 HETATM 29 C C21 NEF . . . B 2 0.773 -1.871 14.797 1 103.97 ? C21 NEF 1101 A 1 HETATM 30 N N22 NEF . . . B 2 1.444 -1.972 16.049 1 97.59 ? N22 NEF 1101 A 1 HETATM 31 N N23 NEF . . . B 2 1.363 -3.163 11.386 1 104.35 ? N23 NEF 1101 A 1 HETATM 32 O O24 NEF . . . B 2 1.054 -2.795 16.838 1 105.86 ? O24 NEF 1101 A 1 HETATM 33 O O25 NEF . . . B 2 2.378 -1.243 16.247 1 97.58 ? O25 NEF 1101 A 1 HETATM 34 O O26 NEF . . . B 2 2.567 -3.401 11.432 1 89.67 ? O26 NEF 1101 A 1 HETATM 35 O O27 NEF . . . B 2 0.673 -3.351 10.402 1 98.4 ? O27 NEF 1101 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #