data_6HR8
#
_model_server_result.job_id            DvNi5IpNN0geBjtzMPYWiw 
_model_server_result.datetime_utc      '2024-10-19 13:21:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":501}' 
#
_entry.id    6HR8 
#
_exptl.entry_id    6HR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HR8 
_cell.length_a            231.79 
_cell.length_b            231.79 
_cell.length_c            98.714 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        90 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 1 
E,F,AA,BA 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_667 -y+1,-x+1,-z+2 0 -1 0 -1 0 0 0 0 -1 231.79 231.79 197.428 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 L N N 
? 3 R N N 
? 3 W N N 
? 3 AA N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 253 A ALA 232 1_555 A N CSO 254 A CSO 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CSO 254 A CSO 233 1_555 A N VAL 255 A VAL 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
metalc ? metalc1 D OE2 GLU 49 D GLU 28 1_555 Z NA NA . D NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc2 D O CYS 139 D CYS 118 1_555 Y NA NA . D NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? 
metalc ? metalc3 D OE2 GLU 282 D GLU 261 1_555 Y NA NA . D NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.157 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 249 n n 
PA O2A NAP sing 250 n n 
PA O5B NAP sing 251 n n 
PA O3 NAP sing 252 n n 
O2A HOA2 NAP sing 253 n n 
O5B C5B NAP sing 254 n n 
C5B C4B NAP sing 255 n n 
C5B H51A NAP sing 256 n n 
C5B H52A NAP sing 257 n n 
C4B O4B NAP sing 258 n n 
C4B C3B NAP sing 259 n n 
C4B H4B NAP sing 260 n n 
O4B C1B NAP sing 261 n n 
C3B O3B NAP sing 262 n n 
C3B C2B NAP sing 263 n n 
C3B H3B NAP sing 264 n n 
O3B HO3A NAP sing 265 n n 
C2B O2B NAP sing 266 n n 
C2B C1B NAP sing 267 n n 
C2B H2B NAP sing 268 n n 
O2B P2B NAP sing 269 n n 
C1B N9A NAP sing 270 n n 
C1B H1B NAP sing 271 n n 
N9A C8A NAP sing 272 n y 
N9A C4A NAP sing 273 n y 
C8A N7A NAP doub 274 n y 
C8A H8A NAP sing 275 n n 
N7A C5A NAP sing 276 n y 
C5A C6A NAP sing 277 n y 
C5A C4A NAP doub 278 n y 
C6A N6A NAP sing 279 n n 
C6A N1A NAP doub 280 n y 
N6A H61A NAP sing 281 n n 
N6A H62A NAP sing 282 n n 
N1A C2A NAP sing 283 n y 
C2A N3A NAP doub 284 n y 
C2A H2A NAP sing 285 n n 
N3A C4A NAP sing 286 n y 
O3 PN NAP sing 287 n n 
PN O1N NAP doub 288 n n 
PN O2N NAP sing 289 n n 
PN O5D NAP sing 290 n n 
O5D C5D NAP sing 291 n n 
C5D C4D NAP sing 292 n n 
C5D H51N NAP sing 293 n n 
C5D H52N NAP sing 294 n n 
C4D O4D NAP sing 295 n n 
C4D C3D NAP sing 296 n n 
C4D H4D NAP sing 297 n n 
O4D C1D NAP sing 298 n n 
C3D O3D NAP sing 299 n n 
C3D C2D NAP sing 300 n n 
C3D H3D NAP sing 301 n n 
O3D HO3N NAP sing 302 n n 
C2D O2D NAP sing 303 n n 
C2D C1D NAP sing 304 n n 
C2D H2D NAP sing 305 n n 
O2D HO2N NAP sing 306 n n 
C1D N1N NAP sing 307 n n 
C1D H1D NAP sing 308 n n 
N1N C2N NAP sing 309 n y 
N1N C6N NAP doub 310 n y 
C2N C3N NAP doub 311 n y 
C2N H2N NAP sing 312 n n 
C3N C7N NAP sing 313 n n 
C3N C4N NAP sing 314 n y 
C7N O7N NAP doub 315 n n 
C7N N7N NAP sing 316 n n 
N7N H71N NAP sing 317 n n 
N7N H72N NAP sing 318 n n 
C4N C5N NAP doub 319 n y 
C4N H4N NAP sing 320 n n 
C5N C6N NAP sing 321 n y 
C5N H5N NAP sing 322 n n 
C6N H6N NAP sing 323 n n 
P2B O1X NAP doub 324 n n 
P2B O2X NAP sing 325 n n 
P2B O3X NAP sing 326 n n 
O2X HOP2 NAP sing 327 n n 
O3X HOP3 NAP sing 328 n n 
#
_atom_sites.entry_id                     6HR8 
_atom_sites.fract_transf_matrix[1][1]    0.004314 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAP A 1 501 502 NAP NAP . 
H 4 SO4 A 1 502 5 SO4 SO4 . 
I 5 PEG A 1 503 1 PEG PEG . 
J 5 PEG A 1 504 5 PEG PEG . 
K 5 PEG A 1 505 8 PEG PEG . 
L 3 NAP B 1 501 503 NAP NAP . 
M 4 SO4 B 1 502 2 SO4 SO4 . 
N 4 SO4 B 1 503 3 SO4 SO4 . 
O 5 PEG B 1 504 6 PEG PEG . 
P 5 PEG B 1 505 7 PEG PEG . 
Q 5 PEG B 1 506 10 PEG PEG . 
R 3 NAP C 1 501 504 NAP NAP . 
S 4 SO4 C 1 502 4 SO4 SO4 . 
T 5 PEG C 1 503 2 PEG PEG . 
U 5 PEG C 1 504 4 PEG PEG . 
V 5 PEG C 1 505 9 PEG PEG . 
W 3 NAP D 1 501 507 NAP NAP . 
X 5 PEG D 1 502 3 PEG PEG . 
Y 6 NA D 1 503 1 NA NA . 
Z 6 NA D 1 504 2 NA NA . 
AA 3 NAP E 1 501 505 NAP NAP . 
BA 3 NAP F 1 501 506 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . AA 3 205.036 39.57 127.17 1 161.01 ? PA NAP 501 E 1 
HETATM 2 O O1A NAP . . . AA 3 204.238 40.34 126.147 1 162.91 ? O1A NAP 501 E 1 
HETATM 3 O O2A NAP . . . AA 3 205.868 38.504 126.505 1 162.24 ? O2A NAP 501 E 1 
HETATM 4 O O5B NAP . . . AA 3 205.993 40.571 127.993 1 155.19 ? O5B NAP 501 E 1 
HETATM 5 C C5B NAP . . . AA 3 206.802 40.05 129.044 1 150.38 ? C5B NAP 501 E 1 
HETATM 6 C C4B NAP . . . AA 3 206.852 41.002 130.226 1 148.31 ? C4B NAP 501 E 1 
HETATM 7 O O4B NAP . . . AA 3 207.377 40.301 131.358 1 143.38 ? O4B NAP 501 E 1 
HETATM 8 C C3B NAP . . . AA 3 207.758 42.2 129.977 1 150.57 ? C3B NAP 501 E 1 
HETATM 9 O O3B NAP . . . AA 3 207.016 43.416 129.792 1 155.26 ? O3B NAP 501 E 1 
HETATM 10 C C2B NAP . . . AA 3 208.666 42.312 131.184 1 146.69 ? C2B NAP 501 E 1 
HETATM 11 O O2B NAP . . . AA 3 208.366 43.496 131.913 1 152.79 ? O2B NAP 501 E 1 
HETATM 12 C C1B NAP . . . AA 3 208.36 41.086 132.042 1 139.7 ? C1B NAP 501 E 1 
HETATM 13 N N9A NAP . . . AA 3 209.556 40.243 132.348 1 130.98 ? N9A NAP 501 E 1 
HETATM 14 C C8A NAP . . . AA 3 209.823 39.753 133.573 1 126.87 ? C8A NAP 501 E 1 
HETATM 15 N N7A NAP . . . AA 3 210.965 39.016 133.573 1 125.57 ? N7A NAP 501 E 1 
HETATM 16 C C5A NAP . . . AA 3 211.449 39.02 132.318 1 125.94 ? C5A NAP 501 E 1 
HETATM 17 C C6A NAP . . . AA 3 212.624 38.43 131.643 1 126.97 ? C6A NAP 501 E 1 
HETATM 18 N N6A NAP . . . AA 3 213.519 37.68 132.323 1 128.15 ? N6A NAP 501 E 1 
HETATM 19 N N1A NAP . . . AA 3 212.766 38.67 130.324 1 126.78 ? N1A NAP 501 E 1 
HETATM 20 C C2A NAP . . . AA 3 211.875 39.421 129.632 1 126.31 ? C2A NAP 501 E 1 
HETATM 21 N N3A NAP . . . AA 3 210.785 39.985 130.191 1 125.98 ? N3A NAP 501 E 1 
HETATM 22 C C4A NAP . . . AA 3 210.516 39.826 131.51 1 127.06 ? C4A NAP 501 E 1 
HETATM 23 O O3 NAP . . . AA 3 204.041 38.875 128.224 1 163.9 ? O3 NAP 501 E 1 
HETATM 24 P PN NAP . . . AA 3 203.317 37.486 127.865 1 164.42 ? PN NAP 501 E 1 
HETATM 25 O O1N NAP . . . AA 3 204.362 36.423 127.624 1 166.63 ? O1N NAP 501 E 1 
HETATM 26 O O2N NAP . . . AA 3 202.45 37.672 126.644 1 168.19 ? O2N NAP 501 E 1 
HETATM 27 O O5D NAP . . . AA 3 202.394 37.032 129.103 1 158.69 ? O5D NAP 501 E 1 
HETATM 28 C C5D NAP . . . AA 3 201.635 37.984 129.837 1 153.92 ? C5D NAP 501 E 1 
HETATM 29 C C4D NAP . . . AA 3 202.368 38.362 131.112 1 152.9 ? C4D NAP 501 E 1 
HETATM 30 O O4D NAP . . . AA 3 202.393 39.782 131.225 1 152.27 ? O4D NAP 501 E 1 
HETATM 31 C C3D NAP . . . AA 3 201.684 37.746 132.327 1 153.02 ? C3D NAP 501 E 1 
HETATM 32 P P2B NAP . . . AA 3 209.157 44.869 131.649 1 161.71 ? P2B NAP 501 E 1 
HETATM 33 O O1X NAP . . . AA 3 208.258 45.803 130.875 1 165.01 ? O1X NAP 501 E 1 
HETATM 34 O O2X NAP . . . AA 3 209.531 45.481 132.977 1 163.88 ? O2X NAP 501 E 1 
HETATM 35 O O3X NAP . . . AA 3 210.402 44.577 130.85 1 164.08 ? O3X NAP 501 E 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           35 
#