data_6HRC
#
_model_server_result.job_id            l80-H89_j1JAo_nHvpqeDA 
_model_server_result.datetime_utc      '2024-11-04 23:28:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hrc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6HRC 
#
_exptl.entry_id    6HRC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HRC 
_cell.length_a            125.68 
_cell.length_b            145.98 
_cell.length_c            206.76 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HRC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE1 GLN 430 B GLN 430 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc2 F O1B AGS . B AGS 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? 
metalc ? metalc3 F O3B AGS . B AGS 601 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 C OG SER 389 C SER 389 1_555 I MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 C OE1 GLN 430 C GLN 430 1_555 I MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc6 H O2B AGS . C AGS 601 1_555 I MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     6HRC 
_atom_sites.fract_transf_matrix[1][1]    0.007957 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AGS A 1 601 1280 AGS AGS . 
F 2 AGS B 1 601 1281 AGS AGS . 
G 3 MG B 1 602 1 MG MG . 
H 2 AGS C 1 601 1282 AGS AGS . 
I 3 MG C 1 602 2 MG MG . 
J 2 AGS D 1 601 1283 AGS AGS . 
K 4 HOH A 1 701 39 HOH HOH . 
K 4 HOH A 2 702 7 HOH HOH . 
K 4 HOH A 3 703 71 HOH HOH . 
K 4 HOH A 4 704 118 HOH HOH . 
K 4 HOH A 5 705 68 HOH HOH . 
K 4 HOH A 6 706 6 HOH HOH . 
K 4 HOH A 7 707 25 HOH HOH . 
K 4 HOH A 8 708 23 HOH HOH . 
K 4 HOH A 9 709 117 HOH HOH . 
K 4 HOH A 10 710 55 HOH HOH . 
K 4 HOH A 11 711 21 HOH HOH . 
K 4 HOH A 12 712 101 HOH HOH . 
K 4 HOH A 13 713 47 HOH HOH . 
K 4 HOH A 14 714 115 HOH HOH . 
K 4 HOH A 15 715 131 HOH HOH . 
K 4 HOH A 16 716 138 HOH HOH . 
K 4 HOH A 17 717 72 HOH HOH . 
K 4 HOH A 18 718 29 HOH HOH . 
K 4 HOH A 19 719 124 HOH HOH . 
K 4 HOH A 20 720 5 HOH HOH . 
K 4 HOH A 21 721 119 HOH HOH . 
K 4 HOH A 22 722 41 HOH HOH . 
K 4 HOH A 23 723 100 HOH HOH . 
K 4 HOH A 24 724 78 HOH HOH . 
K 4 HOH A 25 725 18 HOH HOH . 
K 4 HOH A 26 726 52 HOH HOH . 
K 4 HOH A 27 727 113 HOH HOH . 
K 4 HOH A 28 728 62 HOH HOH . 
K 4 HOH A 29 729 11 HOH HOH . 
K 4 HOH A 30 730 81 HOH HOH . 
K 4 HOH A 31 731 82 HOH HOH . 
K 4 HOH A 32 732 90 HOH HOH . 
L 4 HOH B 1 701 1 HOH HOH . 
L 4 HOH B 2 702 12 HOH HOH . 
L 4 HOH B 3 703 48 HOH HOH . 
L 4 HOH B 4 704 69 HOH HOH . 
L 4 HOH B 5 705 56 HOH HOH . 
L 4 HOH B 6 706 17 HOH HOH . 
L 4 HOH B 7 707 111 HOH HOH . 
L 4 HOH B 8 708 120 HOH HOH . 
L 4 HOH B 9 709 31 HOH HOH . 
L 4 HOH B 10 710 125 HOH HOH . 
L 4 HOH B 11 711 22 HOH HOH . 
L 4 HOH B 12 712 129 HOH HOH . 
L 4 HOH B 13 713 95 HOH HOH . 
L 4 HOH B 14 714 43 HOH HOH . 
L 4 HOH B 15 715 135 HOH HOH . 
L 4 HOH B 16 716 20 HOH HOH . 
L 4 HOH B 17 717 37 HOH HOH . 
L 4 HOH B 18 718 77 HOH HOH . 
L 4 HOH B 19 719 109 HOH HOH . 
L 4 HOH B 20 720 63 HOH HOH . 
L 4 HOH B 21 721 103 HOH HOH . 
L 4 HOH B 22 722 66 HOH HOH . 
L 4 HOH B 23 723 54 HOH HOH . 
L 4 HOH B 24 724 123 HOH HOH . 
L 4 HOH B 25 725 15 HOH HOH . 
L 4 HOH B 26 726 74 HOH HOH . 
L 4 HOH B 27 727 59 HOH HOH . 
L 4 HOH B 28 728 108 HOH HOH . 
L 4 HOH B 29 729 130 HOH HOH . 
L 4 HOH B 30 730 16 HOH HOH . 
L 4 HOH B 31 731 83 HOH HOH . 
L 4 HOH B 32 732 32 HOH HOH . 
L 4 HOH B 33 733 30 HOH HOH . 
L 4 HOH B 34 734 98 HOH HOH . 
L 4 HOH B 35 735 88 HOH HOH . 
L 4 HOH B 36 736 96 HOH HOH . 
M 4 HOH C 1 701 14 HOH HOH . 
M 4 HOH C 2 702 64 HOH HOH . 
M 4 HOH C 3 703 13 HOH HOH . 
M 4 HOH C 4 704 128 HOH HOH . 
M 4 HOH C 5 705 28 HOH HOH . 
M 4 HOH C 6 706 38 HOH HOH . 
M 4 HOH C 7 707 126 HOH HOH . 
M 4 HOH C 8 708 134 HOH HOH . 
M 4 HOH C 9 709 76 HOH HOH . 
M 4 HOH C 10 710 4 HOH HOH . 
M 4 HOH C 11 711 116 HOH HOH . 
M 4 HOH C 12 712 75 HOH HOH . 
M 4 HOH C 13 713 34 HOH HOH . 
M 4 HOH C 14 714 136 HOH HOH . 
M 4 HOH C 15 715 112 HOH HOH . 
M 4 HOH C 16 716 99 HOH HOH . 
M 4 HOH C 17 717 97 HOH HOH . 
M 4 HOH C 18 718 33 HOH HOH . 
M 4 HOH C 19 719 80 HOH HOH . 
M 4 HOH C 20 720 45 HOH HOH . 
M 4 HOH C 21 721 58 HOH HOH . 
M 4 HOH C 22 722 127 HOH HOH . 
M 4 HOH C 23 723 36 HOH HOH . 
M 4 HOH C 24 724 49 HOH HOH . 
M 4 HOH C 25 725 86 HOH HOH . 
M 4 HOH C 26 726 53 HOH HOH . 
M 4 HOH C 27 727 102 HOH HOH . 
M 4 HOH C 28 728 67 HOH HOH . 
M 4 HOH C 29 729 114 HOH HOH . 
M 4 HOH C 30 730 85 HOH HOH . 
M 4 HOH C 31 731 137 HOH HOH . 
M 4 HOH C 32 732 24 HOH HOH . 
M 4 HOH C 33 733 122 HOH HOH . 
M 4 HOH C 34 734 50 HOH HOH . 
M 4 HOH C 35 735 89 HOH HOH . 
M 4 HOH C 36 736 87 HOH HOH . 
M 4 HOH C 37 737 93 HOH HOH . 
N 4 HOH D 1 701 27 HOH HOH . 
N 4 HOH D 2 702 105 HOH HOH . 
N 4 HOH D 3 703 26 HOH HOH . 
N 4 HOH D 4 704 19 HOH HOH . 
N 4 HOH D 5 705 35 HOH HOH . 
N 4 HOH D 6 706 73 HOH HOH . 
N 4 HOH D 7 707 133 HOH HOH . 
N 4 HOH D 8 708 65 HOH HOH . 
N 4 HOH D 9 709 8 HOH HOH . 
N 4 HOH D 10 710 121 HOH HOH . 
N 4 HOH D 11 711 57 HOH HOH . 
N 4 HOH D 12 712 40 HOH HOH . 
N 4 HOH D 13 713 106 HOH HOH . 
N 4 HOH D 14 714 42 HOH HOH . 
N 4 HOH D 15 715 51 HOH HOH . 
N 4 HOH D 16 716 110 HOH HOH . 
N 4 HOH D 17 717 132 HOH HOH . 
N 4 HOH D 18 718 44 HOH HOH . 
N 4 HOH D 19 719 104 HOH HOH . 
N 4 HOH D 20 720 10 HOH HOH . 
N 4 HOH D 21 721 46 HOH HOH . 
N 4 HOH D 22 722 70 HOH HOH . 
N 4 HOH D 23 723 84 HOH HOH . 
N 4 HOH D 24 724 79 HOH HOH . 
N 4 HOH D 25 725 107 HOH HOH . 
N 4 HOH D 26 726 91 HOH HOH . 
N 4 HOH D 27 727 94 HOH HOH . 
N 4 HOH D 28 728 9 HOH HOH . 
N 4 HOH D 29 729 2 HOH HOH . 
N 4 HOH D 30 730 3 HOH HOH . 
N 4 HOH D 31 731 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . F 2 -17.692 -45.709 24.608 1 130.06 ? PG AGS 601 B 1 
HETATM 2 S S1G AGS . . . F 2 -18.182 -44.283 26.033 1 225.58 ? S1G AGS 601 B 1 
HETATM 3 O O2G AGS . . . F 2 -16.277 -46.379 24.983 1 130.55 ? O2G AGS 601 B 1 
HETATM 4 O O3G AGS . . . F 2 -18.74 -46.754 24.575 1 122.07 ? O3G AGS 601 B 1 
HETATM 5 P PB AGS . . . F 2 -17.639 -45.895 21.819 1 75.13 ? PB AGS 601 B 1 
HETATM 6 O O1B AGS . . . F 2 -18.681 -45.302 20.901 1 92.75 ? O1B AGS 601 B 1 
HETATM 7 O O2B AGS . . . F 2 -17.725 -47.35 22.216 1 71.52 ? O2B AGS 601 B 1 
HETATM 8 O O3B AGS . . . F 2 -17.587 -45.009 23.162 1 115.42 ? O3B AGS 601 B 1 
HETATM 9 P PA AGS . . . F 2 -15.942 -44.376 20.198 1 93.24 ? PA AGS 601 B 1 
HETATM 10 O O1A AGS . . . F 2 -17.031 -44.366 19.152 1 79.93 ? O1A AGS 601 B 1 
HETATM 11 O O2A AGS . . . F 2 -15.711 -43.155 21.056 1 93.08 ? O2A AGS 601 B 1 
HETATM 12 O O3A AGS . . . F 2 -16.189 -45.636 21.169 1 128.92 ? O3A AGS 601 B 1 
HETATM 13 O O5' AGS . . . F 2 -14.554 -44.755 19.476 1 130.94 ? O5' AGS 601 B 1 
HETATM 14 C C5' AGS . . . F 2 -14.072 -46.097 19.493 1 131.56 ? C5' AGS 601 B 1 
HETATM 15 C C4' AGS . . . F 2 -13.007 -46.269 18.417 1 90.57 ? C4' AGS 601 B 1 
HETATM 16 O O4' AGS . . . F 2 -13.214 -45.312 17.375 1 74.45 ? O4' AGS 601 B 1 
HETATM 17 C C3' AGS . . . F 2 -11.613 -46.049 18.981 1 94.98 ? C3' AGS 601 B 1 
HETATM 18 O O3' AGS . . . F 2 -10.822 -47.229 18.806 1 100.05 ? O3' AGS 601 B 1 
HETATM 19 C C2' AGS . . . F 2 -11.013 -44.901 18.196 1 101.19 ? C2' AGS 601 B 1 
HETATM 20 O O2' AGS . . . F 2 -9.834 -45.337 17.513 1 104.22 ? O2' AGS 601 B 1 
HETATM 21 C C1' AGS . . . F 2 -12.07 -44.473 17.19 1 95.83 ? C1' AGS 601 B 1 
HETATM 22 N N9 AGS . . . F 2 -12.444 -43.057 17.429 1 90.75 ? N9 AGS 601 B 1 
HETATM 23 C C8 AGS . . . F 2 -13.353 -42.622 18.322 1 94.83 ? C8 AGS 601 B 1 
HETATM 24 N N7 AGS . . . F 2 -13.461 -41.269 18.293 1 92.52 ? N7 AGS 601 B 1 
HETATM 25 C C5 AGS . . . F 2 -12.603 -40.816 17.361 1 82.84 ? C5 AGS 601 B 1 
HETATM 26 C C6 AGS . . . F 2 -12.214 -39.491 16.821 1 80.98 ? C6 AGS 601 B 1 
HETATM 27 N N6 AGS . . . F 2 -12.78 -38.351 17.287 1 88.86 ? N6 AGS 601 B 1 
HETATM 28 N N1 AGS . . . F 2 -11.276 -39.459 15.849 1 73.65 ? N1 AGS 601 B 1 
HETATM 29 C C2 AGS . . . F 2 -10.706 -40.584 15.378 1 74.5 ? C2 AGS 601 B 1 
HETATM 30 N N3 AGS . . . F 2 -11.011 -41.817 15.821 1 71.22 ? N3 AGS 601 B 1 
HETATM 31 C C4 AGS . . . F 2 -11.936 -41.998 16.794 1 78.78 ? C4 AGS 601 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#