data_6HRH
#
_model_server_result.job_id            VymPZ4hAQmpwFRPX-ZuS6g 
_model_server_result.datetime_utc      '2025-03-13 19:57:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hrh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6HRH 
#
_exptl.entry_id    6HRH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.05 
_cell.angle_gamma         90 
_cell.entry_id            6HRH 
_cell.length_a            125.771 
_cell.length_b            107.703 
_cell.length_c            75.713 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HRH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     6HRH 
_atom_sites.fract_transf_matrix[1][1]    0.007951 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002745 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013973 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP B 1 601 1 PLP PLP . 
D 2 PLP A 1 601 2 PLP PLP . 
E 3 HOH B 1 701 208 HOH HOH . 
E 3 HOH B 2 702 73 HOH HOH . 
E 3 HOH B 3 703 171 HOH HOH . 
E 3 HOH B 4 704 601 HOH HOH . 
E 3 HOH B 5 705 77 HOH HOH . 
E 3 HOH B 6 706 81 HOH HOH . 
E 3 HOH B 7 707 9 HOH HOH . 
E 3 HOH B 8 708 2301 HOH HOH . 
E 3 HOH B 9 709 86 HOH HOH . 
E 3 HOH B 10 710 196 HOH HOH . 
E 3 HOH B 11 711 2701 HOH HOH . 
E 3 HOH B 12 712 63 HOH HOH . 
E 3 HOH B 13 713 3401 HOH HOH . 
E 3 HOH B 14 714 4001 HOH HOH . 
E 3 HOH B 15 715 3001 HOH HOH . 
E 3 HOH B 16 716 1301 HOH HOH . 
E 3 HOH B 17 717 61 HOH HOH . 
E 3 HOH B 18 718 54 HOH HOH . 
E 3 HOH B 19 719 107 HOH HOH . 
E 3 HOH B 20 720 159 HOH HOH . 
E 3 HOH B 21 721 146 HOH HOH . 
E 3 HOH B 22 722 2001 HOH HOH . 
E 3 HOH B 23 723 2501 HOH HOH . 
E 3 HOH B 24 724 2401 HOH HOH . 
E 3 HOH B 25 725 2801 HOH HOH . 
E 3 HOH B 26 726 95 HOH HOH . 
E 3 HOH B 27 727 156 HOH HOH . 
E 3 HOH B 28 728 147 HOH HOH . 
E 3 HOH B 29 729 185 HOH HOH . 
E 3 HOH B 30 730 2901 HOH HOH . 
E 3 HOH B 31 731 119 HOH HOH . 
E 3 HOH B 32 732 6 HOH HOH . 
E 3 HOH B 33 733 105 HOH HOH . 
E 3 HOH B 34 734 74 HOH HOH . 
E 3 HOH B 35 735 122 HOH HOH . 
E 3 HOH B 36 736 72 HOH HOH . 
E 3 HOH B 37 737 125 HOH HOH . 
E 3 HOH B 38 738 132 HOH HOH . 
E 3 HOH B 39 739 143 HOH HOH . 
E 3 HOH B 40 740 128 HOH HOH . 
E 3 HOH B 41 741 134 HOH HOH . 
E 3 HOH B 42 742 150 HOH HOH . 
E 3 HOH B 43 743 194 HOH HOH . 
E 3 HOH B 44 744 4501 HOH HOH . 
E 3 HOH B 45 745 201 HOH HOH . 
E 3 HOH B 46 746 1501 HOH HOH . 
E 3 HOH B 47 747 67 HOH HOH . 
E 3 HOH B 48 748 203 HOH HOH . 
E 3 HOH B 49 749 149 HOH HOH . 
E 3 HOH B 50 750 3201 HOH HOH . 
E 3 HOH B 51 751 206 HOH HOH . 
E 3 HOH B 52 752 123 HOH HOH . 
E 3 HOH B 53 753 88 HOH HOH . 
E 3 HOH B 54 754 80 HOH HOH . 
E 3 HOH B 55 755 71 HOH HOH . 
E 3 HOH B 56 756 184 HOH HOH . 
E 3 HOH B 57 757 151 HOH HOH . 
E 3 HOH B 58 758 62 HOH HOH . 
E 3 HOH B 59 759 110 HOH HOH . 
E 3 HOH B 60 760 3901 HOH HOH . 
E 3 HOH B 61 761 126 HOH HOH . 
E 3 HOH B 62 762 189 HOH HOH . 
E 3 HOH B 63 763 1401 HOH HOH . 
E 3 HOH B 64 764 161 HOH HOH . 
E 3 HOH B 65 765 4401 HOH HOH . 
E 3 HOH B 66 766 12 HOH HOH . 
E 3 HOH B 67 767 69 HOH HOH . 
E 3 HOH B 68 768 183 HOH HOH . 
E 3 HOH B 69 769 65 HOH HOH . 
E 3 HOH B 70 770 3301 HOH HOH . 
E 3 HOH B 71 771 801 HOH HOH . 
E 3 HOH B 72 772 4201 HOH HOH . 
E 3 HOH B 73 773 97 HOH HOH . 
E 3 HOH B 74 774 142 HOH HOH . 
E 3 HOH B 75 775 84 HOH HOH . 
E 3 HOH B 76 776 135 HOH HOH . 
E 3 HOH B 77 777 204 HOH HOH . 
E 3 HOH B 78 778 1201 HOH HOH . 
E 3 HOH B 79 779 2101 HOH HOH . 
E 3 HOH B 80 780 1001 HOH HOH . 
E 3 HOH B 81 781 154 HOH HOH . 
E 3 HOH B 82 782 111 HOH HOH . 
E 3 HOH B 83 783 701 HOH HOH . 
E 3 HOH B 84 784 1601 HOH HOH . 
E 3 HOH B 85 785 137 HOH HOH . 
E 3 HOH B 86 786 64 HOH HOH . 
E 3 HOH B 87 787 92 HOH HOH . 
E 3 HOH B 88 788 2201 HOH HOH . 
E 3 HOH B 89 789 127 HOH HOH . 
E 3 HOH B 90 790 82 HOH HOH . 
E 3 HOH B 91 791 56 HOH HOH . 
E 3 HOH B 92 792 181 HOH HOH . 
E 3 HOH B 93 793 68 HOH HOH . 
E 3 HOH B 94 794 83 HOH HOH . 
E 3 HOH B 95 795 124 HOH HOH . 
E 3 HOH B 96 796 100 HOH HOH . 
E 3 HOH B 97 797 160 HOH HOH . 
E 3 HOH B 98 798 75 HOH HOH . 
E 3 HOH B 99 799 148 HOH HOH . 
E 3 HOH B 100 800 60 HOH HOH . 
E 3 HOH B 101 801 158 HOH HOH . 
E 3 HOH B 102 802 152 HOH HOH . 
E 3 HOH B 103 803 162 HOH HOH . 
E 3 HOH B 104 804 58 HOH HOH . 
E 3 HOH B 105 805 4101 HOH HOH . 
E 3 HOH B 106 806 155 HOH HOH . 
E 3 HOH B 107 807 1101 HOH HOH . 
E 3 HOH B 108 808 104 HOH HOH . 
E 3 HOH B 109 809 4301 HOH HOH . 
E 3 HOH B 110 810 3601 HOH HOH . 
E 3 HOH B 111 811 3501 HOH HOH . 
E 3 HOH B 112 812 98 HOH HOH . 
E 3 HOH B 113 813 59 HOH HOH . 
E 3 HOH B 114 814 103 HOH HOH . 
E 3 HOH B 115 815 157 HOH HOH . 
E 3 HOH B 116 816 3101 HOH HOH . 
E 3 HOH B 117 817 70 HOH HOH . 
E 3 HOH B 118 818 99 HOH HOH . 
E 3 HOH B 119 819 3701 HOH HOH . 
E 3 HOH B 120 820 168 HOH HOH . 
E 3 HOH B 121 821 901 HOH HOH . 
E 3 HOH B 122 822 4801 HOH HOH . 
E 3 HOH B 123 823 1701 HOH HOH . 
E 3 HOH B 124 824 198 HOH HOH . 
E 3 HOH B 125 825 66 HOH HOH . 
E 3 HOH B 126 826 186 HOH HOH . 
E 3 HOH B 127 827 109 HOH HOH . 
E 3 HOH B 128 828 3801 HOH HOH . 
E 3 HOH B 129 829 138 HOH HOH . 
E 3 HOH B 130 830 141 HOH HOH . 
E 3 HOH B 131 831 78 HOH HOH . 
E 3 HOH B 132 832 76 HOH HOH . 
E 3 HOH B 133 833 188 HOH HOH . 
E 3 HOH B 134 834 133 HOH HOH . 
E 3 HOH B 135 835 193 HOH HOH . 
E 3 HOH B 136 836 11 HOH HOH . 
F 3 HOH A 1 701 197 HOH HOH . 
F 3 HOH A 2 702 32 HOH HOH . 
F 3 HOH A 3 703 179 HOH HOH . 
F 3 HOH A 4 704 108 HOH HOH . 
F 3 HOH A 5 705 7 HOH HOH . 
F 3 HOH A 6 706 170 HOH HOH . 
F 3 HOH A 7 707 166 HOH HOH . 
F 3 HOH A 8 708 167 HOH HOH . 
F 3 HOH A 9 709 182 HOH HOH . 
F 3 HOH A 10 710 42 HOH HOH . 
F 3 HOH A 11 711 1 HOH HOH . 
F 3 HOH A 12 712 14 HOH HOH . 
F 3 HOH A 13 713 57 HOH HOH . 
F 3 HOH A 14 714 46 HOH HOH . 
F 3 HOH A 15 715 112 HOH HOH . 
F 3 HOH A 16 716 153 HOH HOH . 
F 3 HOH A 17 717 90 HOH HOH . 
F 3 HOH A 18 718 23 HOH HOH . 
F 3 HOH A 19 719 21 HOH HOH . 
F 3 HOH A 20 720 52 HOH HOH . 
F 3 HOH A 21 721 202 HOH HOH . 
F 3 HOH A 22 722 5601 HOH HOH . 
F 3 HOH A 23 723 19 HOH HOH . 
F 3 HOH A 24 724 47 HOH HOH . 
F 3 HOH A 25 725 94 HOH HOH . 
F 3 HOH A 26 726 209 HOH HOH . 
F 3 HOH A 27 727 136 HOH HOH . 
F 3 HOH A 28 728 139 HOH HOH . 
F 3 HOH A 29 729 26 HOH HOH . 
F 3 HOH A 30 730 6101 HOH HOH . 
F 3 HOH A 31 731 117 HOH HOH . 
F 3 HOH A 32 732 5 HOH HOH . 
F 3 HOH A 33 733 144 HOH HOH . 
F 3 HOH A 34 734 5901 HOH HOH . 
F 3 HOH A 35 735 31 HOH HOH . 
F 3 HOH A 36 736 5701 HOH HOH . 
F 3 HOH A 37 737 91 HOH HOH . 
F 3 HOH A 38 738 140 HOH HOH . 
F 3 HOH A 39 739 5801 HOH HOH . 
F 3 HOH A 40 740 4 HOH HOH . 
F 3 HOH A 41 741 6201 HOH HOH . 
F 3 HOH A 42 742 101 HOH HOH . 
F 3 HOH A 43 743 18 HOH HOH . 
F 3 HOH A 44 744 207 HOH HOH . 
F 3 HOH A 45 745 165 HOH HOH . 
F 3 HOH A 46 746 79 HOH HOH . 
F 3 HOH A 47 747 1901 HOH HOH . 
F 3 HOH A 48 748 93 HOH HOH . 
F 3 HOH A 49 749 177 HOH HOH . 
F 3 HOH A 50 750 190 HOH HOH . 
F 3 HOH A 51 751 43 HOH HOH . 
F 3 HOH A 52 752 25 HOH HOH . 
F 3 HOH A 53 753 5201 HOH HOH . 
F 3 HOH A 54 754 13 HOH HOH . 
F 3 HOH A 55 755 36 HOH HOH . 
F 3 HOH A 56 756 5501 HOH HOH . 
F 3 HOH A 57 757 29 HOH HOH . 
F 3 HOH A 58 758 22 HOH HOH . 
F 3 HOH A 59 759 34 HOH HOH . 
F 3 HOH A 60 760 199 HOH HOH . 
F 3 HOH A 61 761 24 HOH HOH . 
F 3 HOH A 62 762 40 HOH HOH . 
F 3 HOH A 63 763 55 HOH HOH . 
F 3 HOH A 64 764 41 HOH HOH . 
F 3 HOH A 65 765 131 HOH HOH . 
F 3 HOH A 66 766 49 HOH HOH . 
F 3 HOH A 67 767 20 HOH HOH . 
F 3 HOH A 68 768 53 HOH HOH . 
F 3 HOH A 69 769 129 HOH HOH . 
F 3 HOH A 70 770 6001 HOH HOH . 
F 3 HOH A 71 771 191 HOH HOH . 
F 3 HOH A 72 772 5301 HOH HOH . 
F 3 HOH A 73 773 195 HOH HOH . 
F 3 HOH A 74 774 176 HOH HOH . 
F 3 HOH A 75 775 4901 HOH HOH . 
F 3 HOH A 76 776 187 HOH HOH . 
F 3 HOH A 77 777 192 HOH HOH . 
F 3 HOH A 78 778 10 HOH HOH . 
F 3 HOH A 79 779 37 HOH HOH . 
F 3 HOH A 80 780 27 HOH HOH . 
F 3 HOH A 81 781 51 HOH HOH . 
F 3 HOH A 82 782 38 HOH HOH . 
F 3 HOH A 83 783 4601 HOH HOH . 
F 3 HOH A 84 784 3 HOH HOH . 
F 3 HOH A 85 785 17 HOH HOH . 
F 3 HOH A 86 786 102 HOH HOH . 
F 3 HOH A 87 787 8 HOH HOH . 
F 3 HOH A 88 788 114 HOH HOH . 
F 3 HOH A 89 789 16 HOH HOH . 
F 3 HOH A 90 790 172 HOH HOH . 
F 3 HOH A 91 791 200 HOH HOH . 
F 3 HOH A 92 792 130 HOH HOH . 
F 3 HOH A 93 793 175 HOH HOH . 
F 3 HOH A 94 794 15 HOH HOH . 
F 3 HOH A 95 795 35 HOH HOH . 
F 3 HOH A 96 796 178 HOH HOH . 
F 3 HOH A 97 797 169 HOH HOH . 
F 3 HOH A 98 798 5401 HOH HOH . 
F 3 HOH A 99 799 5101 HOH HOH . 
F 3 HOH A 100 800 39 HOH HOH . 
F 3 HOH A 101 801 50 HOH HOH . 
F 3 HOH A 102 802 48 HOH HOH . 
F 3 HOH A 103 803 45 HOH HOH . 
F 3 HOH A 104 804 30 HOH HOH . 
F 3 HOH A 105 805 44 HOH HOH . 
F 3 HOH A 106 806 173 HOH HOH . 
F 3 HOH A 107 807 145 HOH HOH . 
F 3 HOH A 108 808 174 HOH HOH . 
F 3 HOH A 109 809 163 HOH HOH . 
F 3 HOH A 110 810 1801 HOH HOH . 
F 3 HOH A 111 811 120 HOH HOH . 
F 3 HOH A 112 812 5001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 2 30.278 -24.104 24.006 1 65.05 ? N1 PLP 601 A 1 
HETATM 2 C C2 PLP . . . D 2 29.572 -23.169 24.73 1 65.08 ? C2 PLP 601 A 1 
HETATM 3 C C2A PLP . . . D 2 29.562 -23.229 26.227 1 64.95 ? C2A PLP 601 A 1 
HETATM 4 C C3 PLP . . . D 2 28.868 -22.166 24.077 1 65.25 ? C3 PLP 601 A 1 
HETATM 5 O O3 PLP . . . D 2 28.169 -21.241 24.807 1 65.21 ? O3 PLP 601 A 1 
HETATM 6 C C4 PLP . . . D 2 28.858 -22.088 22.69 1 65.45 ? C4 PLP 601 A 1 
HETATM 7 C C4A PLP . . . D 2 27.88 -21.106 22.094 1 65.81 ? C4A PLP 601 A 1 
HETATM 8 O O4A PLP . . . D 2 27.613 -20.995 20.899 1 66.16 ? O4A PLP 601 A 1 
HETATM 9 C C5 PLP . . . D 2 29.579 -23.044 21.961 1 65.07 ? C5 PLP 601 A 1 
HETATM 10 C C6 PLP . . . D 2 30.282 -24.041 22.629 1 65.15 ? C6 PLP 601 A 1 
HETATM 11 C C5A PLP . . . D 2 29.642 -23.047 20.454 1 64.55 ? C5A PLP 601 A 1 
HETATM 12 O O4P PLP . . . D 2 30.712 -22.222 20.057 1 64.13 ? O4P PLP 601 A 1 
HETATM 13 P P PLP . . . D 2 30.683 -21.551 18.598 1 63.69 ? P PLP 601 A 1 
HETATM 14 O O1P PLP . . . D 2 30.192 -22.575 17.607 1 63.45 ? O1P PLP 601 A 1 
HETATM 15 O O2P PLP . . . D 2 32.063 -21.068 18.217 1 63.44 ? O2P PLP 601 A 1 
HETATM 16 O O3P PLP . . . D 2 29.721 -20.39 18.644 1 63.52 ? O3P PLP 601 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#