data_6HRK # _model_server_result.job_id sOWI2w4Kz3--afVFeHX2OQ _model_server_result.datetime_utc '2025-05-21 05:50:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hrk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6HRK # _exptl.entry_id 6HRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.67 _cell.angle_gamma 90 _cell.entry_id 6HRK _cell.length_a 61.248 _cell.length_b 74.823 _cell.length_c 61.031 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 42 A CYS 72 1_555 E CBC BLA . A BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale2 A SG CYS 52 A CYS 82 1_555 E CAC BLA . A BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale3 B SG CYS 42 B CYS 72 1_555 F CBC BLA . B BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale4 B SG CYS 52 B CYS 82 1_555 F CAC BLA . B BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale5 C SG CYS 42 C CYS 72 1_555 G CBC BLA . C BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale6 C SG CYS 52 C CYS 82 1_555 G CAC BLA . C BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale7 D SG CYS 42 D CYS 72 1_555 H CBC BLA . D BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale8 D SG CYS 52 D CYS 82 1_555 H CAC BLA . D BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 6HRK _atom_sites.fract_transf_matrix[1][1] 0.016327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00019 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BLA A 1 201 3 BLA BVE . F 2 BLA B 1 201 4 BLA BVE . G 2 BLA C 1 201 1 BLA BVE . H 2 BLA D 1 201 2 BLA BVE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . E 2 13.041 0.17 -59.178 1 34.19 ? CHA BLA 201 A 1 HETATM 2 N NA BLA . . . E 2 13.905 1.967 -57.498 1 34.84 ? NA BLA 201 A 1 HETATM 3 C C1A BLA . . . E 2 13.519 1.532 -58.722 1 34.77 ? C1A BLA 201 A 1 HETATM 4 C C2A BLA . . . E 2 13.634 2.673 -59.667 1 35.17 ? C2A BLA 201 A 1 HETATM 5 C C3A BLA . . . E 2 14.086 3.759 -58.936 1 35.21 ? C3A BLA 201 A 1 HETATM 6 C C4A BLA . . . E 2 14.27 3.277 -57.536 1 34.68 ? C4A BLA 201 A 1 HETATM 7 C CMA BLA . . . E 2 14.342 5.142 -59.48 1 35.51 ? CMA BLA 201 A 1 HETATM 8 C CAA BLA . . . E 2 13.298 2.636 -61.146 1 35.38 ? CAA BLA 201 A 1 HETATM 9 C CBA BLA . . . E 2 14.529 2.781 -62.038 1 35.27 ? CBA BLA 201 A 1 HETATM 10 C CGA BLA . . . E 2 15.595 1.765 -61.708 1 35.34 ? CGA BLA 201 A 1 HETATM 11 O O1A BLA . . . E 2 16.543 2.121 -60.977 1 35.94 ? O1A BLA 201 A 1 HETATM 12 O O2A BLA . . . E 2 15.493 0.612 -62.175 1 35.34 ? O2A BLA 201 A 1 HETATM 13 C CHB BLA . . . E 2 14.727 4.075 -56.326 1 34.77 ? CHB BLA 201 A 1 HETATM 14 N NB BLA . . . E 2 16.777 5.017 -57.581 1 35.12 ? NB BLA 201 A 1 HETATM 15 C C1B BLA . . . E 2 15.966 4.938 -56.489 1 34.94 ? C1B BLA 201 A 1 HETATM 16 C C2B BLA . . . E 2 16.434 5.788 -55.465 1 34.79 ? C2B BLA 201 A 1 HETATM 17 C C3B BLA . . . E 2 17.582 6.446 -55.896 1 35.19 ? C3B BLA 201 A 1 HETATM 18 C C4B BLA . . . E 2 17.733 5.902 -57.261 1 35.25 ? C4B BLA 201 A 1 HETATM 19 C CMB BLA . . . E 2 15.786 5.948 -54.111 1 34.74 ? CMB BLA 201 A 1 HETATM 20 O OB BLA . . . E 2 18.819 6.269 -58.197 1 35.54 ? OB BLA 201 A 1 HETATM 21 C CAB BLA . . . E 2 18.414 7.456 -55.125 1 35.75 ? CAB BLA 201 A 1 HETATM 22 C CBB BLA . . . E 2 19.812 7.619 -55.682 1 36.25 ? CBB BLA 201 A 1 HETATM 23 N NC BLA . . . E 2 12.361 -0.707 -53.47 1 32.37 ? NC BLA 201 A 1 HETATM 24 C C1C BLA . . . E 2 12.425 -0.411 -52.173 1 32.09 ? C1C BLA 201 A 1 HETATM 25 C C2C BLA . . . E 2 12.052 -1.629 -51.383 1 31.84 ? C2C BLA 201 A 1 HETATM 26 C C3C BLA . . . E 2 12.502 -2.686 -52.378 1 31.91 ? C3C BLA 201 A 1 HETATM 27 C C4C BLA . . . E 2 12.101 -2.104 -53.745 1 32.44 ? C4C BLA 201 A 1 HETATM 28 C CMC BLA . . . E 2 12.738 -1.711 -50.025 1 32.13 ? CMC BLA 201 A 1 HETATM 29 O OC BLA . . . E 2 12.786 0.646 -51.683 1 31.45 ? OC BLA 201 A 1 HETATM 30 C CAC BLA . . . E 2 12.102 -4.132 -52.046 1 31.7 ? CAC BLA 201 A 1 HETATM 31 C CBC BLA . . . E 2 10.632 -4.411 -52.248 1 32.31 ? CBC BLA 201 A 1 HETATM 32 C CHD BLA . . . E 2 12.976 -2.642 -54.868 1 32.78 ? CHD BLA 201 A 1 HETATM 33 N ND BLA . . . E 2 13.104 -1.005 -56.844 1 33.71 ? ND BLA 201 A 1 HETATM 34 C C1D BLA . . . E 2 12.775 -2.214 -56.303 1 32.99 ? C1D BLA 201 A 1 HETATM 35 C C2D BLA . . . E 2 12.285 -3.102 -57.388 1 33.46 ? C2D BLA 201 A 1 HETATM 36 C C3D BLA . . . E 2 12.316 -2.268 -58.605 1 33.86 ? C3D BLA 201 A 1 HETATM 37 C C4D BLA . . . E 2 12.852 -0.951 -58.18 1 34.01 ? C4D BLA 201 A 1 HETATM 38 C CMD BLA . . . E 2 11.817 -4.53 -57.284 1 33.49 ? CMD BLA 201 A 1 HETATM 39 C CAD BLA . . . E 2 11.909 -2.67 -60.002 1 34.29 ? CAD BLA 201 A 1 HETATM 40 C CBD BLA . . . E 2 10.404 -2.613 -60.186 1 34.64 ? CBD BLA 201 A 1 HETATM 41 C CGD BLA . . . E 2 10.099 -3.11 -61.576 1 34.98 ? CGD BLA 201 A 1 HETATM 42 O O1D BLA . . . E 2 9.734 -2.278 -62.43 1 35.72 ? O1D BLA 201 A 1 HETATM 43 O O2D BLA . . . E 2 10.232 -4.331 -61.818 1 35.47 ? O2D BLA 201 A 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #