data_6HRK # _model_server_result.job_id 8_7Ltxz6_dbUATiTEyDHgw _model_server_result.datetime_utc '2025-06-18 12:05:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hrk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 6HRK # _exptl.entry_id 6HRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BILIVERDINE IX ALPHA' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.67 _cell.angle_gamma 90 _cell.entry_id 6HRK _cell.length_a 61.248 _cell.length_b 74.823 _cell.length_c 61.031 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 42 A CYS 72 1_555 E CBC BLA . A BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale2 A SG CYS 52 A CYS 82 1_555 E CAC BLA . A BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale3 B SG CYS 42 B CYS 72 1_555 F CBC BLA . B BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale4 B SG CYS 52 B CYS 82 1_555 F CAC BLA . B BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale5 C SG CYS 42 C CYS 72 1_555 G CBC BLA . C BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale6 C SG CYS 52 C CYS 82 1_555 G CAC BLA . C BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale7 D SG CYS 42 D CYS 72 1_555 H CBC BLA . D BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale8 D SG CYS 52 D CYS 82 1_555 H CAC BLA . D BLA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? # _chem_comp.formula 'C33 H34 N4 O6' _chem_comp.formula_weight 582.646 _chem_comp.id BLA _chem_comp.mon_nstd_flag . _chem_comp.name 'BILIVERDINE IX ALPHA' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A BLA sing 70 n n CHA C4D BLA doub 71 z n CHA HHA BLA sing 72 n n NA C1A BLA sing 73 n y NA C4A BLA sing 74 n y NA HA BLA sing 75 n n C1A C2A BLA doub 76 n y C2A C3A BLA sing 77 n y C2A CAA BLA sing 78 n n C3A C4A BLA doub 79 n y C3A CMA BLA sing 80 n n C4A CHB BLA sing 81 n n CMA HMA1 BLA sing 82 n n CMA HMA2 BLA sing 83 n n CMA HMA3 BLA sing 84 n n CAA CBA BLA sing 85 n n CAA HAA1 BLA sing 86 n n CAA HAA2 BLA sing 87 n n CBA CGA BLA sing 88 n n CBA HBA1 BLA sing 89 n n CBA HBA2 BLA sing 90 n n CGA O1A BLA doub 91 n n CGA O2A BLA sing 92 n n O2A H2A BLA sing 93 n n CHB C1B BLA doub 94 z n CHB HHB BLA sing 95 n n NB C1B BLA sing 96 n n NB C4B BLA sing 97 n n NB HB BLA sing 98 n n C1B C2B BLA sing 99 n n C2B C3B BLA doub 100 n n C2B CMB BLA sing 101 n n C3B C4B BLA sing 102 n n C3B CAB BLA sing 103 n n C4B OB BLA doub 104 n n CMB HMB1 BLA sing 105 n n CMB HMB2 BLA sing 106 n n CMB HMB3 BLA sing 107 n n CAB CBB BLA doub 108 n n CAB HAB BLA sing 109 n n CBB HBB1 BLA sing 110 n n CBB HBB2 BLA sing 111 n n NC C1C BLA sing 112 n n NC C4C BLA sing 113 n n NC HC BLA sing 114 n n C1C C2C BLA sing 115 n n C1C OC BLA doub 116 n n C2C C3C BLA doub 117 n n C2C CMC BLA sing 118 n n C3C C4C BLA sing 119 n n C3C CAC BLA sing 120 n n C4C CHD BLA doub 121 z n CMC HMC1 BLA sing 122 n n CMC HMC2 BLA sing 123 n n CMC HMC3 BLA sing 124 n n CAC CBC BLA doub 125 n n CAC HAC BLA sing 126 n n CBC HBC1 BLA sing 127 n n CBC HBC2 BLA sing 128 n n CHD C1D BLA sing 129 n n CHD HHD BLA sing 130 n n ND C1D BLA doub 131 n n ND C4D BLA sing 132 n n C1D C2D BLA sing 133 n n C2D C3D BLA doub 134 n n C2D CMD BLA sing 135 n n C3D C4D BLA sing 136 n n C3D CAD BLA sing 137 n n CMD HMD1 BLA sing 138 n n CMD HMD2 BLA sing 139 n n CMD HMD3 BLA sing 140 n n CAD CBD BLA sing 141 n n CAD HAD1 BLA sing 142 n n CAD HAD2 BLA sing 143 n n CBD CGD BLA sing 144 n n CBD HBD1 BLA sing 145 n n CBD HBD2 BLA sing 146 n n CGD O1D BLA doub 147 n n CGD O2D BLA sing 148 n n O2D H2D BLA sing 149 n n # _atom_sites.entry_id 6HRK _atom_sites.fract_transf_matrix[1][1] 0.016327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00019 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BLA A 1 201 3 BLA BVE . F 2 BLA B 1 201 4 BLA BVE . G 2 BLA C 1 201 1 BLA BVE . H 2 BLA D 1 201 2 BLA BVE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA BLA . . . H 2 -3.404 9.376 -39.964 1 33.31 ? CHA BLA 201 D 1 HETATM 2 N NA BLA . . . H 2 -4.442 7.177 -39.006 1 33.41 ? NA BLA 201 D 1 HETATM 3 C C1A BLA . . . H 2 -3.902 7.936 -39.989 1 33.4 ? C1A BLA 201 D 1 HETATM 4 C C2A BLA . . . H 2 -3.854 7.093 -41.216 1 33.7 ? C2A BLA 201 D 1 HETATM 5 C C3A BLA . . . H 2 -4.376 5.852 -40.887 1 33.72 ? C3A BLA 201 D 1 HETATM 6 C C4A BLA . . . H 2 -4.769 5.929 -39.448 1 33.54 ? C4A BLA 201 D 1 HETATM 7 C CMA BLA . . . H 2 -4.51 4.679 -41.824 1 33.97 ? CMA BLA 201 D 1 HETATM 8 C CAA BLA . . . H 2 -3.325 7.524 -42.57 1 34.36 ? CAA BLA 201 D 1 HETATM 9 C CBA BLA . . . H 2 -4.415 7.543 -43.645 1 34.81 ? CBA BLA 201 D 1 HETATM 10 C CGA BLA . . . H 2 -5.43 8.657 -43.489 1 34.92 ? CGA BLA 201 D 1 HETATM 11 O O1A BLA . . . H 2 -6.03 9.02 -44.522 1 35.37 ? O1A BLA 201 D 1 HETATM 12 O O2A BLA . . . H 2 -5.663 9.175 -42.374 1 34.91 ? O2A BLA 201 D 1 HETATM 13 C CHB BLA . . . H 2 -5.366 4.841 -38.563 1 33.43 ? CHB BLA 201 D 1 HETATM 14 N NB BLA . . . H 2 -7.054 3.999 -40.327 1 34.37 ? NB BLA 201 D 1 HETATM 15 C C1B BLA . . . H 2 -6.434 3.919 -39.117 1 33.59 ? C1B BLA 201 D 1 HETATM 16 C C2B BLA . . . H 2 -6.924 2.811 -38.386 1 33.71 ? C2B BLA 201 D 1 HETATM 17 C C3B BLA . . . H 2 -7.884 2.147 -39.146 1 33.78 ? C3B BLA 201 D 1 HETATM 18 C C4B BLA . . . H 2 -7.905 2.963 -40.371 1 33.79 ? C4B BLA 201 D 1 HETATM 19 C CMB BLA . . . H 2 -6.485 2.401 -37.001 1 33.43 ? CMB BLA 201 D 1 HETATM 20 O OB BLA . . . H 2 -8.774 2.681 -41.531 1 33.56 ? OB BLA 201 D 1 HETATM 21 C CAB BLA . . . H 2 -8.689 0.91 -38.796 1 33.7 ? CAB BLA 201 D 1 HETATM 22 C CBB BLA . . . H 2 -10.113 1.011 -39.302 1 33.82 ? CBB BLA 201 D 1 HETATM 23 N NC BLA . . . H 2 -3.367 8.487 -34.251 1 32.42 ? NC BLA 201 D 1 HETATM 24 C C1C BLA . . . H 2 -3.519 7.798 -33.119 1 32.2 ? C1C BLA 201 D 1 HETATM 25 C C2C BLA . . . H 2 -3.223 8.711 -31.961 1 31.94 ? C2C BLA 201 D 1 HETATM 26 C C3C BLA . . . H 2 -3.679 10.008 -32.616 1 31.89 ? C3C BLA 201 D 1 HETATM 27 C C4C BLA . . . H 2 -3.102 9.895 -34.039 1 32.09 ? C4C BLA 201 D 1 HETATM 28 C CMC BLA . . . H 2 -3.951 8.361 -30.667 1 32.17 ? CMC BLA 201 D 1 HETATM 29 O OC BLA . . . H 2 -3.896 6.643 -33.019 1 32.65 ? OC BLA 201 D 1 HETATM 30 C CAC BLA . . . H 2 -3.478 11.312 -31.818 1 31.4 ? CAC BLA 201 D 1 HETATM 31 C CBC BLA . . . H 2 -2.045 11.79 -31.826 1 30.88 ? CBC BLA 201 D 1 HETATM 32 C CHD BLA . . . H 2 -3.811 10.818 -35.022 1 32.39 ? CHD BLA 201 D 1 HETATM 33 N ND BLA . . . H 2 -3.717 9.821 -37.406 1 32.86 ? ND BLA 201 D 1 HETATM 34 C C1D BLA . . . H 2 -3.466 10.812 -36.499 1 32.65 ? C1D BLA 201 D 1 HETATM 35 C C2D BLA . . . H 2 -2.882 11.972 -37.223 1 32.91 ? C2D BLA 201 D 1 HETATM 36 C C3D BLA . . . H 2 -2.773 11.541 -38.628 1 33.16 ? C3D BLA 201 D 1 HETATM 37 C C4D BLA . . . H 2 -3.333 10.16 -38.668 1 32.99 ? C4D BLA 201 D 1 HETATM 38 C CMD BLA . . . H 2 -2.455 13.3 -36.656 1 33.28 ? CMD BLA 201 D 1 HETATM 39 C CAD BLA . . . H 2 -2.232 12.361 -39.779 1 33.29 ? CAD BLA 201 D 1 HETATM 40 C CBD BLA . . . H 2 -0.719 12.261 -39.915 1 33.86 ? CBD BLA 201 D 1 HETATM 41 C CGD BLA . . . H 2 -0.207 13.203 -40.989 1 34.8 ? CGD BLA 201 D 1 HETATM 42 O O1D BLA . . . H 2 1.008 13.142 -41.283 1 35.2 ? O1D BLA 201 D 1 HETATM 43 O O2D BLA . . . H 2 -0.99 14.011 -41.551 1 35.48 ? O2D BLA 201 D 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #