data_6HRR # _model_server_result.job_id qWPMvIjkoqRs5MvDwXOvxQ _model_server_result.datetime_utc '2024-11-08 04:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hrr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 6HRR # _exptl.entry_id 6HRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HRR _cell.length_a 109.471 _cell.length_b 109.471 _cell.length_c 149.744 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,U 1 1,2,4,6 B,L,M,N,O,P,Q,R,S,T,V 2 1,3,5,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -109.471 109.471 0 4 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_565 -y,x+1,z 0 -1 0 1 0 0 0 0 1 0 109.471 0 6 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 7 'crystal symmetry operation' 4_455 y-1,-x,z 0 1 0 -1 0 0 0 0 1 -109.471 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 164 1_555 A SG CYS 99 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 152 A CYS 243 1_555 A SG CYS 183 A CYS 274 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 73 B CYS 164 1_555 B SG CYS 99 B CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 B SG CYS 152 B CYS 243 1_555 B SG CYS 183 B CYS 274 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O SER 176 A SER 267 1_555 C K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc2 A O SER 176 A SER 267 1_555 C K K . A K 301 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc3 A OD1 ASP 177 A ASP 268 1_555 C K K . A K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc4 A OD1 ASP 177 A ASP 268 1_555 C K K . A K 301 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.87 ? metalc ? metalc5 C K K . A K 301 1_555 U O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.495 ? metalc ? metalc6 C K K . A K 301 1_555 U O HOH . A HOH 488 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.495 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6HRR _atom_sites.fract_transf_matrix[1][1] 0.009135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 301 1 K K . D 3 CL A 1 302 2 CL CL . E 3 CL A 1 303 4 CL CL . F 4 GOL A 1 304 5 GOL GOL . G 4 GOL A 1 305 8 GOL GOL . H 4 GOL A 1 306 9 GOL GOL . I 4 GOL A 1 307 11 GOL GOL . J 4 GOL A 1 308 12 GOL GOL . K 5 MES A 1 309 1 MES MES . L 3 CL B 1 301 3 CL CL . M 4 GOL B 1 302 6 GOL GOL . N 4 GOL B 1 303 13 GOL GOL . O 4 GOL B 1 304 14 GOL GOL . P 4 GOL B 1 305 15 GOL GOL . Q 4 GOL B 1 306 16 GOL GOL . R 4 GOL B 1 307 17 GOL GOL . S 5 MES B 1 308 2 MES MES . T 5 MES B 1 309 3 MES MES . U 6 HOH A 1 401 57 HOH HOH . U 6 HOH A 2 402 71 HOH HOH . U 6 HOH A 3 403 42 HOH HOH . U 6 HOH A 4 404 142 HOH HOH . U 6 HOH A 5 405 59 HOH HOH . U 6 HOH A 6 406 20 HOH HOH . U 6 HOH A 7 407 201 HOH HOH . U 6 HOH A 8 408 38 HOH HOH . U 6 HOH A 9 409 25 HOH HOH . U 6 HOH A 10 410 5 HOH HOH . U 6 HOH A 11 411 31 HOH HOH . U 6 HOH A 12 412 23 HOH HOH . U 6 HOH A 13 413 14 HOH HOH . U 6 HOH A 14 414 6 HOH HOH . U 6 HOH A 15 415 94 HOH HOH . U 6 HOH A 16 416 36 HOH HOH . U 6 HOH A 17 417 96 HOH HOH . U 6 HOH A 18 418 135 HOH HOH . U 6 HOH A 19 419 28 HOH HOH . U 6 HOH A 20 420 19 HOH HOH . U 6 HOH A 21 421 48 HOH HOH . U 6 HOH A 22 422 97 HOH HOH . U 6 HOH A 23 423 169 HOH HOH . U 6 HOH A 24 424 187 HOH HOH . U 6 HOH A 25 425 137 HOH HOH . U 6 HOH A 26 426 10 HOH HOH . U 6 HOH A 27 427 54 HOH HOH . U 6 HOH A 28 428 111 HOH HOH . U 6 HOH A 29 429 107 HOH HOH . U 6 HOH A 30 430 35 HOH HOH . U 6 HOH A 31 431 179 HOH HOH . U 6 HOH A 32 432 136 HOH HOH . U 6 HOH A 33 433 104 HOH HOH . U 6 HOH A 34 434 159 HOH HOH . U 6 HOH A 35 435 162 HOH HOH . U 6 HOH A 36 436 194 HOH HOH . U 6 HOH A 37 437 116 HOH HOH . U 6 HOH A 38 438 114 HOH HOH . U 6 HOH A 39 439 138 HOH HOH . U 6 HOH A 40 440 189 HOH HOH . U 6 HOH A 41 441 8 HOH HOH . U 6 HOH A 42 442 106 HOH HOH . U 6 HOH A 43 443 34 HOH HOH . U 6 HOH A 44 444 120 HOH HOH . U 6 HOH A 45 445 121 HOH HOH . U 6 HOH A 46 446 24 HOH HOH . U 6 HOH A 47 447 45 HOH HOH . U 6 HOH A 48 448 40 HOH HOH . U 6 HOH A 49 449 65 HOH HOH . U 6 HOH A 50 450 7 HOH HOH . U 6 HOH A 51 451 206 HOH HOH . U 6 HOH A 52 452 141 HOH HOH . U 6 HOH A 53 453 47 HOH HOH . U 6 HOH A 54 454 74 HOH HOH . U 6 HOH A 55 455 171 HOH HOH . U 6 HOH A 56 456 12 HOH HOH . U 6 HOH A 57 457 157 HOH HOH . U 6 HOH A 58 458 1 HOH HOH . U 6 HOH A 59 459 174 HOH HOH . U 6 HOH A 60 460 52 HOH HOH . U 6 HOH A 61 461 192 HOH HOH . U 6 HOH A 62 462 117 HOH HOH . U 6 HOH A 63 463 110 HOH HOH . U 6 HOH A 64 464 66 HOH HOH . U 6 HOH A 65 465 76 HOH HOH . U 6 HOH A 66 466 43 HOH HOH . U 6 HOH A 67 467 29 HOH HOH . U 6 HOH A 68 468 105 HOH HOH . U 6 HOH A 69 469 193 HOH HOH . U 6 HOH A 70 470 64 HOH HOH . U 6 HOH A 71 471 139 HOH HOH . U 6 HOH A 72 472 26 HOH HOH . U 6 HOH A 73 473 122 HOH HOH . U 6 HOH A 74 474 101 HOH HOH . U 6 HOH A 75 475 108 HOH HOH . U 6 HOH A 76 476 60 HOH HOH . U 6 HOH A 77 477 95 HOH HOH . U 6 HOH A 78 478 22 HOH HOH . U 6 HOH A 79 479 115 HOH HOH . U 6 HOH A 80 480 79 HOH HOH . U 6 HOH A 81 481 202 HOH HOH . U 6 HOH A 82 482 134 HOH HOH . U 6 HOH A 83 483 58 HOH HOH . U 6 HOH A 84 484 204 HOH HOH . U 6 HOH A 85 485 185 HOH HOH . U 6 HOH A 86 486 168 HOH HOH . U 6 HOH A 87 487 143 HOH HOH . U 6 HOH A 88 488 156 HOH HOH . U 6 HOH A 89 489 119 HOH HOH . U 6 HOH A 90 490 205 HOH HOH . U 6 HOH A 91 491 88 HOH HOH . U 6 HOH A 92 492 98 HOH HOH . U 6 HOH A 93 493 75 HOH HOH . U 6 HOH A 94 494 41 HOH HOH . U 6 HOH A 95 495 144 HOH HOH . U 6 HOH A 96 496 170 HOH HOH . U 6 HOH A 97 497 158 HOH HOH . U 6 HOH A 98 498 200 HOH HOH . U 6 HOH A 99 499 184 HOH HOH . U 6 HOH A 100 500 172 HOH HOH . U 6 HOH A 101 501 118 HOH HOH . U 6 HOH A 102 502 199 HOH HOH . U 6 HOH A 103 503 69 HOH HOH . U 6 HOH A 104 504 77 HOH HOH . U 6 HOH A 105 505 190 HOH HOH . U 6 HOH A 106 506 176 HOH HOH . U 6 HOH A 107 507 132 HOH HOH . U 6 HOH A 108 508 109 HOH HOH . V 6 HOH B 1 401 147 HOH HOH . V 6 HOH B 2 402 196 HOH HOH . V 6 HOH B 3 403 53 HOH HOH . V 6 HOH B 4 404 4 HOH HOH . V 6 HOH B 5 405 11 HOH HOH . V 6 HOH B 6 406 51 HOH HOH . V 6 HOH B 7 407 2 HOH HOH . V 6 HOH B 8 408 13 HOH HOH . V 6 HOH B 9 409 81 HOH HOH . V 6 HOH B 10 410 133 HOH HOH . V 6 HOH B 11 411 93 HOH HOH . V 6 HOH B 12 412 166 HOH HOH . V 6 HOH B 13 413 164 HOH HOH . V 6 HOH B 14 414 198 HOH HOH . V 6 HOH B 15 415 50 HOH HOH . V 6 HOH B 16 416 63 HOH HOH . V 6 HOH B 17 417 167 HOH HOH . V 6 HOH B 18 418 89 HOH HOH . V 6 HOH B 19 419 39 HOH HOH . V 6 HOH B 20 420 102 HOH HOH . V 6 HOH B 21 421 21 HOH HOH . V 6 HOH B 22 422 203 HOH HOH . V 6 HOH B 23 423 9 HOH HOH . V 6 HOH B 24 424 37 HOH HOH . V 6 HOH B 25 425 92 HOH HOH . V 6 HOH B 26 426 46 HOH HOH . V 6 HOH B 27 427 72 HOH HOH . V 6 HOH B 28 428 68 HOH HOH . V 6 HOH B 29 429 131 HOH HOH . V 6 HOH B 30 430 15 HOH HOH . V 6 HOH B 31 431 130 HOH HOH . V 6 HOH B 32 432 183 HOH HOH . V 6 HOH B 33 433 78 HOH HOH . V 6 HOH B 34 434 161 HOH HOH . V 6 HOH B 35 435 146 HOH HOH . V 6 HOH B 36 436 17 HOH HOH . V 6 HOH B 37 437 112 HOH HOH . V 6 HOH B 38 438 85 HOH HOH . V 6 HOH B 39 439 56 HOH HOH . V 6 HOH B 40 440 100 HOH HOH . V 6 HOH B 41 441 195 HOH HOH . V 6 HOH B 42 442 18 HOH HOH . V 6 HOH B 43 443 140 HOH HOH . V 6 HOH B 44 444 73 HOH HOH . V 6 HOH B 45 445 62 HOH HOH . V 6 HOH B 46 446 178 HOH HOH . V 6 HOH B 47 447 103 HOH HOH . V 6 HOH B 48 448 3 HOH HOH . V 6 HOH B 49 449 70 HOH HOH . V 6 HOH B 50 450 55 HOH HOH . V 6 HOH B 51 451 155 HOH HOH . V 6 HOH B 52 452 44 HOH HOH . V 6 HOH B 53 453 84 HOH HOH . V 6 HOH B 54 454 91 HOH HOH . V 6 HOH B 55 455 125 HOH HOH . V 6 HOH B 56 456 16 HOH HOH . V 6 HOH B 57 457 80 HOH HOH . V 6 HOH B 58 458 32 HOH HOH . V 6 HOH B 59 459 180 HOH HOH . V 6 HOH B 60 460 197 HOH HOH . V 6 HOH B 61 461 82 HOH HOH . V 6 HOH B 62 462 160 HOH HOH . V 6 HOH B 63 463 87 HOH HOH . V 6 HOH B 64 464 61 HOH HOH . V 6 HOH B 65 465 182 HOH HOH . V 6 HOH B 66 466 27 HOH HOH . V 6 HOH B 67 467 173 HOH HOH . V 6 HOH B 68 468 86 HOH HOH . V 6 HOH B 69 469 33 HOH HOH . V 6 HOH B 70 470 113 HOH HOH . V 6 HOH B 71 471 177 HOH HOH . V 6 HOH B 72 472 30 HOH HOH . V 6 HOH B 73 473 153 HOH HOH . V 6 HOH B 74 474 83 HOH HOH . V 6 HOH B 75 475 165 HOH HOH . V 6 HOH B 76 476 149 HOH HOH . V 6 HOH B 77 477 123 HOH HOH . V 6 HOH B 78 478 127 HOH HOH . V 6 HOH B 79 479 126 HOH HOH . V 6 HOH B 80 480 148 HOH HOH . V 6 HOH B 81 481 151 HOH HOH . V 6 HOH B 82 482 128 HOH HOH . V 6 HOH B 83 483 154 HOH HOH . V 6 HOH B 84 484 145 HOH HOH . V 6 HOH B 85 485 186 HOH HOH . V 6 HOH B 86 486 90 HOH HOH . V 6 HOH B 87 487 150 HOH HOH . V 6 HOH B 88 488 124 HOH HOH . V 6 HOH B 89 489 67 HOH HOH . V 6 HOH B 90 490 49 HOH HOH . V 6 HOH B 91 491 152 HOH HOH . V 6 HOH B 92 492 163 HOH HOH . V 6 HOH B 93 493 175 HOH HOH . V 6 HOH B 94 494 188 HOH HOH . V 6 HOH B 95 495 99 HOH HOH . V 6 HOH B 96 496 129 HOH HOH . V 6 HOH B 97 497 181 HOH HOH . V 6 HOH B 98 498 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -6.349 35.41 -22.493 0.5 93.45 ? C1 GOL 307 A 1 HETATM 2 O O1 GOL . . . I 4 -7.481 34.711 -21.99 0.5 92.32 ? O1 GOL 307 A 1 HETATM 3 C C2 GOL . . . I 4 -5.081 34.924 -21.83 0.5 93.59 ? C2 GOL 307 A 1 HETATM 4 O O2 GOL . . . I 4 -4.841 33.56 -22.188 0.5 93.08 ? O2 GOL 307 A 1 HETATM 5 C C3 GOL . . . I 4 -3.88 35.761 -22.198 0.5 94.3 ? C3 GOL 307 A 1 HETATM 6 O O3 GOL . . . I 4 -2.736 35.299 -21.493 0.5 94.92 ? O3 GOL 307 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #