data_6HSB # _model_server_result.job_id QjxzSHqoYSeowgiGhvCsHA _model_server_result.datetime_utc '2025-03-25 16:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hsb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6HSB # _exptl.entry_id 6HSB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HSB _cell.length_a 188.458 _cell.length_b 188.458 _cell.length_c 188.458 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HSB _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 31_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 36_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 7 'crystal symmetry operation' 52_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 54_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 59_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 10 'crystal symmetry operation' 75_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 11 'crystal symmetry operation' 80_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 12 'crystal symmetry operation' 82_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 6HSB _atom_sites.fract_transf_matrix[1][1] 0.005306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 2 GOL GOL . D 3 EPE A 1 203 1 EPE EPE . E 4 HOH A 1 301 11 HOH HOH . E 4 HOH A 2 302 39 HOH HOH . E 4 HOH A 3 303 66 HOH HOH . E 4 HOH A 4 304 100 HOH HOH . E 4 HOH A 5 305 76 HOH HOH . E 4 HOH A 6 306 1 HOH HOH . E 4 HOH A 7 307 32 HOH HOH . E 4 HOH A 8 308 52 HOH HOH . E 4 HOH A 9 309 53 HOH HOH . E 4 HOH A 10 310 9 HOH HOH . E 4 HOH A 11 311 33 HOH HOH . E 4 HOH A 12 312 85 HOH HOH . E 4 HOH A 13 313 5 HOH HOH . E 4 HOH A 14 314 73 HOH HOH . E 4 HOH A 15 315 23 HOH HOH . E 4 HOH A 16 316 72 HOH HOH . E 4 HOH A 17 317 22 HOH HOH . E 4 HOH A 18 318 42 HOH HOH . E 4 HOH A 19 319 29 HOH HOH . E 4 HOH A 20 320 77 HOH HOH . E 4 HOH A 21 321 25 HOH HOH . E 4 HOH A 22 322 86 HOH HOH . E 4 HOH A 23 323 31 HOH HOH . E 4 HOH A 24 324 65 HOH HOH . E 4 HOH A 25 325 87 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 96 HOH HOH . E 4 HOH A 28 328 49 HOH HOH . E 4 HOH A 29 329 4 HOH HOH . E 4 HOH A 30 330 70 HOH HOH . E 4 HOH A 31 331 61 HOH HOH . E 4 HOH A 32 332 47 HOH HOH . E 4 HOH A 33 333 8 HOH HOH . E 4 HOH A 34 334 101 HOH HOH . E 4 HOH A 35 335 102 HOH HOH . E 4 HOH A 36 336 35 HOH HOH . E 4 HOH A 37 337 15 HOH HOH . E 4 HOH A 38 338 55 HOH HOH . E 4 HOH A 39 339 28 HOH HOH . E 4 HOH A 40 340 24 HOH HOH . E 4 HOH A 41 341 92 HOH HOH . E 4 HOH A 42 342 21 HOH HOH . E 4 HOH A 43 343 51 HOH HOH . E 4 HOH A 44 344 2 HOH HOH . E 4 HOH A 45 345 3 HOH HOH . E 4 HOH A 46 346 59 HOH HOH . E 4 HOH A 47 347 38 HOH HOH . E 4 HOH A 48 348 6 HOH HOH . E 4 HOH A 49 349 18 HOH HOH . E 4 HOH A 50 350 84 HOH HOH . E 4 HOH A 51 351 19 HOH HOH . E 4 HOH A 52 352 80 HOH HOH . E 4 HOH A 53 353 37 HOH HOH . E 4 HOH A 54 354 46 HOH HOH . E 4 HOH A 55 355 54 HOH HOH . E 4 HOH A 56 356 12 HOH HOH . E 4 HOH A 57 357 7 HOH HOH . E 4 HOH A 58 358 43 HOH HOH . E 4 HOH A 59 359 16 HOH HOH . E 4 HOH A 60 360 62 HOH HOH . E 4 HOH A 61 361 74 HOH HOH . E 4 HOH A 62 362 68 HOH HOH . E 4 HOH A 63 363 17 HOH HOH . E 4 HOH A 64 364 45 HOH HOH . E 4 HOH A 65 365 14 HOH HOH . E 4 HOH A 66 366 27 HOH HOH . E 4 HOH A 67 367 34 HOH HOH . E 4 HOH A 68 368 58 HOH HOH . E 4 HOH A 69 369 40 HOH HOH . E 4 HOH A 70 370 69 HOH HOH . E 4 HOH A 71 371 94 HOH HOH . E 4 HOH A 72 372 13 HOH HOH . E 4 HOH A 73 373 20 HOH HOH . E 4 HOH A 74 374 90 HOH HOH . E 4 HOH A 75 375 79 HOH HOH . E 4 HOH A 76 376 93 HOH HOH . E 4 HOH A 77 377 95 HOH HOH . E 4 HOH A 78 378 67 HOH HOH . E 4 HOH A 79 379 71 HOH HOH . E 4 HOH A 80 380 36 HOH HOH . E 4 HOH A 81 381 78 HOH HOH . E 4 HOH A 82 382 57 HOH HOH . E 4 HOH A 83 383 97 HOH HOH . E 4 HOH A 84 384 83 HOH HOH . E 4 HOH A 85 385 99 HOH HOH . E 4 HOH A 86 386 81 HOH HOH . E 4 HOH A 87 387 89 HOH HOH . E 4 HOH A 88 388 75 HOH HOH . E 4 HOH A 89 389 60 HOH HOH . E 4 HOH A 90 390 82 HOH HOH . E 4 HOH A 91 391 91 HOH HOH . E 4 HOH A 92 392 64 HOH HOH . E 4 HOH A 93 393 63 HOH HOH . E 4 HOH A 94 394 88 HOH HOH . E 4 HOH A 95 395 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -7.479 23.633 10.815 1 91.31 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -7.167 24.457 9.699 1 69.81 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 -6.725 24.092 12.047 1 105.83 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 -6.547 25.511 12.02 1 88.74 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 -7.403 23.682 13.34 1 113.96 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 -6.475 23.652 14.424 1 119.14 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #