data_6HT0 # _model_server_result.job_id dRV1Ws8FC_mmDfwwHlxJbg _model_server_result.datetime_utc '2025-02-17 16:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ht0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":210}' # _entry.id 6HT0 # _exptl.entry_id 6HT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-cyclopropyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HT0 _cell.length_a 48.754 _cell.length_b 48.754 _cell.length_c 132.858 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H26 N6 O' _chem_comp.formula_weight 414.503 _chem_comp.id GQ8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-cyclopropyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 GQ8 sing 138 n n C3 C2 GQ8 sing 139 n n C4 N GQ8 sing 140 n n C2 C1 GQ8 sing 141 n n C1 N GQ8 sing 142 n n C1 C GQ8 sing 143 n n N5 C23 GQ8 sing 144 n y N5 C6 GQ8 doub 145 n y N C5 GQ8 sing 146 n n C22 C23 GQ8 doub 147 n y C22 C21 GQ8 sing 148 n y C5 C6 GQ8 sing 149 n n C23 C7 GQ8 sing 150 n y C6 N1 GQ8 sing 151 n y C21 C9 GQ8 doub 152 n y C7 N1 GQ8 sing 153 n y C7 C8 GQ8 doub 154 n y C9 C8 GQ8 sing 155 n y C9 N2 GQ8 sing 156 n n N2 C10 GQ8 sing 157 n n C20 C19 GQ8 doub 158 n y C20 C11 GQ8 sing 159 n y C10 C11 GQ8 sing 160 n n C10 O GQ8 doub 161 n n C19 C18 GQ8 sing 162 n y C11 C12 GQ8 doub 163 n y C18 N4 GQ8 sing 164 n y C18 C13 GQ8 doub 165 n y C15 C16 GQ8 sing 166 n n C15 N4 GQ8 sing 167 n n C15 C17 GQ8 sing 168 n n C12 C13 GQ8 sing 169 n y C16 C17 GQ8 sing 170 n n N4 N3 GQ8 sing 171 n y C13 C14 GQ8 sing 172 n y N3 C14 GQ8 doub 173 n y C1 H1 GQ8 sing 174 n n C2 H2 GQ8 sing 175 n n C2 H3 GQ8 sing 176 n n C3 H4 GQ8 sing 177 n n C3 H5 GQ8 sing 178 n n C5 H6 GQ8 sing 179 n n C5 H7 GQ8 sing 180 n n C8 H8 GQ8 sing 181 n n C15 H9 GQ8 sing 182 n n C16 H10 GQ8 sing 183 n n C16 H11 GQ8 sing 184 n n C19 H12 GQ8 sing 185 n n C21 H13 GQ8 sing 186 n n C22 H14 GQ8 sing 187 n n C20 H15 GQ8 sing 188 n n C17 H16 GQ8 sing 189 n n C17 H17 GQ8 sing 190 n n C14 H18 GQ8 sing 191 n n C12 H19 GQ8 sing 192 n n N2 H20 GQ8 sing 193 n n N1 H21 GQ8 sing 194 n n C H24 GQ8 sing 195 n n C H25 GQ8 sing 196 n n C H26 GQ8 sing 197 n n C4 H27 GQ8 sing 198 n n C4 H28 GQ8 sing 199 n n # _atom_sites.entry_id 6HT0 _atom_sites.fract_transf_matrix[1][1] 0.020511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 3 EDO A 1 202 6 EDO EDO . D 3 EDO A 1 203 7 EDO EDO . E 3 EDO A 1 204 8 EDO EDO . F 3 EDO A 1 205 9 EDO EDO . G 3 EDO A 1 206 10 EDO EDO . H 3 EDO A 1 207 11 EDO EDO . I 3 EDO A 1 208 12 EDO EDO . J 3 EDO A 1 209 13 EDO EDO . K 4 GQ8 A 1 210 1 GQ8 MMY . L 5 HOH A 1 301 96 HOH HOH . L 5 HOH A 2 302 11 HOH HOH . L 5 HOH A 3 303 93 HOH HOH . L 5 HOH A 4 304 65 HOH HOH . L 5 HOH A 5 305 35 HOH HOH . L 5 HOH A 6 306 79 HOH HOH . L 5 HOH A 7 307 55 HOH HOH . L 5 HOH A 8 308 13 HOH HOH . L 5 HOH A 9 309 2 HOH HOH . L 5 HOH A 10 310 47 HOH HOH . L 5 HOH A 11 311 12 HOH HOH . L 5 HOH A 12 312 56 HOH HOH . L 5 HOH A 13 313 36 HOH HOH . L 5 HOH A 14 314 81 HOH HOH . L 5 HOH A 15 315 19 HOH HOH . L 5 HOH A 16 316 15 HOH HOH . L 5 HOH A 17 317 43 HOH HOH . L 5 HOH A 18 318 4 HOH HOH . L 5 HOH A 19 319 33 HOH HOH . L 5 HOH A 20 320 32 HOH HOH . L 5 HOH A 21 321 83 HOH HOH . L 5 HOH A 22 322 52 HOH HOH . L 5 HOH A 23 323 25 HOH HOH . L 5 HOH A 24 324 75 HOH HOH . L 5 HOH A 25 325 50 HOH HOH . L 5 HOH A 26 326 31 HOH HOH . L 5 HOH A 27 327 45 HOH HOH . L 5 HOH A 28 328 78 HOH HOH . L 5 HOH A 29 329 89 HOH HOH . L 5 HOH A 30 330 29 HOH HOH . L 5 HOH A 31 331 51 HOH HOH . L 5 HOH A 32 332 8 HOH HOH . L 5 HOH A 33 333 37 HOH HOH . L 5 HOH A 34 334 80 HOH HOH . L 5 HOH A 35 335 48 HOH HOH . L 5 HOH A 36 336 27 HOH HOH . L 5 HOH A 37 337 54 HOH HOH . L 5 HOH A 38 338 38 HOH HOH . L 5 HOH A 39 339 22 HOH HOH . L 5 HOH A 40 340 18 HOH HOH . L 5 HOH A 41 341 85 HOH HOH . L 5 HOH A 42 342 64 HOH HOH . L 5 HOH A 43 343 26 HOH HOH . L 5 HOH A 44 344 49 HOH HOH . L 5 HOH A 45 345 70 HOH HOH . L 5 HOH A 46 346 14 HOH HOH . L 5 HOH A 47 347 17 HOH HOH . L 5 HOH A 48 348 20 HOH HOH . L 5 HOH A 49 349 82 HOH HOH . L 5 HOH A 50 350 95 HOH HOH . L 5 HOH A 51 351 10 HOH HOH . L 5 HOH A 52 352 16 HOH HOH . L 5 HOH A 53 353 28 HOH HOH . L 5 HOH A 54 354 88 HOH HOH . L 5 HOH A 55 355 86 HOH HOH . L 5 HOH A 56 356 9 HOH HOH . L 5 HOH A 57 357 39 HOH HOH . L 5 HOH A 58 358 23 HOH HOH . L 5 HOH A 59 359 42 HOH HOH . L 5 HOH A 60 360 24 HOH HOH . L 5 HOH A 61 361 30 HOH HOH . L 5 HOH A 62 362 67 HOH HOH . L 5 HOH A 63 363 21 HOH HOH . L 5 HOH A 64 364 91 HOH HOH . L 5 HOH A 65 365 66 HOH HOH . L 5 HOH A 66 366 59 HOH HOH . L 5 HOH A 67 367 53 HOH HOH . L 5 HOH A 68 368 90 HOH HOH . L 5 HOH A 69 369 97 HOH HOH . L 5 HOH A 70 370 84 HOH HOH . L 5 HOH A 71 371 3 HOH HOH . L 5 HOH A 72 372 6 HOH HOH . L 5 HOH A 73 373 60 HOH HOH . L 5 HOH A 74 374 76 HOH HOH . L 5 HOH A 75 375 1 HOH HOH . L 5 HOH A 76 376 40 HOH HOH . L 5 HOH A 77 377 44 HOH HOH . L 5 HOH A 78 378 98 HOH HOH . L 5 HOH A 79 379 63 HOH HOH . L 5 HOH A 80 380 92 HOH HOH . L 5 HOH A 81 381 5 HOH HOH . L 5 HOH A 82 382 46 HOH HOH . L 5 HOH A 83 383 87 HOH HOH . L 5 HOH A 84 384 77 HOH HOH . L 5 HOH A 85 385 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GQ8 . . . K 4 -12.24 8.688 47.177 1 43.3 ? C1 GQ8 210 A 1 HETATM 2 C C2 GQ8 . . . K 4 -11.004 8.506 46.305 1 43.27 ? C2 GQ8 210 A 1 HETATM 3 C C3 GQ8 . . . K 4 -11.309 7.329 45.451 1 43.47 ? C3 GQ8 210 A 1 HETATM 4 N N4 GQ8 . . . K 4 -15.875 -4.748 53.958 1 43.7 ? N4 GQ8 210 A 1 HETATM 5 C C5 GQ8 . . . K 4 -14.006 7.182 47.964 1 41.21 ? C5 GQ8 210 A 1 HETATM 6 C C6 GQ8 . . . K 4 -14.355 5.773 48.306 1 38.93 ? C6 GQ8 210 A 1 HETATM 7 C C8 GQ8 . . . K 4 -14.708 2.878 50.263 1 34.77 ? C8 GQ8 210 A 1 HETATM 8 C C9 GQ8 . . . K 4 -15.154 1.628 49.827 1 34.1 ? C9 GQ8 210 A 1 HETATM 9 C C10 GQ8 . . . K 4 -15.062 0.428 52.01 1 33.46 ? C10 GQ8 210 A 1 HETATM 10 C C11 GQ8 . . . K 4 -15.28 -0.927 52.576 1 37.68 ? C11 GQ8 210 A 1 HETATM 11 C C13 GQ8 . . . K 4 -14.808 -2.805 54.005 1 40.39 ? C13 GQ8 210 A 1 HETATM 12 C C15 GQ8 . . . K 4 -16.693 -5.894 53.553 1 46.9 ? C15 GQ8 210 A 1 HETATM 13 C C16 GQ8 . . . K 4 -18.16 -5.834 53.799 1 48.01 ? C16 GQ8 210 A 1 HETATM 14 C C18 GQ8 . . . K 4 -15.83 -3.519 53.364 1 41.59 ? C18 GQ8 210 A 1 HETATM 15 C C19 GQ8 . . . K 4 -16.578 -2.95 52.359 1 41.09 ? C19 GQ8 210 A 1 HETATM 16 C C21 GQ8 . . . K 4 -15.563 1.44 48.497 1 35.18 ? C21 GQ8 210 A 1 HETATM 17 C C22 GQ8 . . . K 4 -15.515 2.484 47.589 1 35.45 ? C22 GQ8 210 A 1 HETATM 18 C C23 GQ8 . . . K 4 -15.05 3.712 48.03 1 36.07 ? C23 GQ8 210 A 1 HETATM 19 O O GQ8 . . . K 4 -14.813 1.386 52.739 1 32.36 ? O GQ8 210 A 1 HETATM 20 C C20 GQ8 . . . K 4 -16.312 -1.655 51.979 1 38.22 ? C20 GQ8 210 A 1 HETATM 21 C C17 GQ8 . . . K 4 -17.3 -6.75 54.61 1 46.77 ? C17 GQ8 210 A 1 HETATM 22 N N3 GQ8 . . . K 4 -14.959 -4.847 54.968 1 43.19 ? N3 GQ8 210 A 1 HETATM 23 C C14 GQ8 . . . K 4 -14.321 -3.695 54.99 1 43.59 ? C14 GQ8 210 A 1 HETATM 24 C C12 GQ8 . . . K 4 -14.524 -1.499 53.599 1 38.2 ? C12 GQ8 210 A 1 HETATM 25 N N2 GQ8 . . . K 4 -15.243 0.509 50.671 1 32.73 ? N2 GQ8 210 A 1 HETATM 26 C C7 GQ8 . . . K 4 -14.65 3.921 49.349 1 36.17 ? C7 GQ8 210 A 1 HETATM 27 N N1 GQ8 . . . K 4 -14.216 5.232 49.5 1 37.22 ? N1 GQ8 210 A 1 HETATM 28 N N5 GQ8 . . . K 4 -14.85 4.908 47.389 1 36.5 ? N5 GQ8 210 A 1 HETATM 29 N N GQ8 . . . K 4 -12.643 7.289 47.451 1 42.2 ? N GQ8 210 A 1 HETATM 30 C C GQ8 . . . K 4 -11.979 9.498 48.432 1 42.33 ? C GQ8 210 A 1 HETATM 31 C C4 GQ8 . . . K 4 -12.455 6.586 46.164 1 42.97 ? C4 GQ8 210 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #