data_6HT1 # _model_server_result.job_id ERWnJL7-HHNsZmVMOVylwA _model_server_result.datetime_utc '2024-11-24 08:45:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ht1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":210}' # _entry.id 6HT1 # _exptl.entry_id 6HT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.466 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HT1 _cell.length_a 48.842 _cell.length_b 48.842 _cell.length_c 133.238 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H24 N6 O' _chem_comp.formula_weight 388.466 _chem_comp.id GQ5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C4 GQ5 sing 138 n n C3 C2 GQ5 sing 139 n n C4 N GQ5 sing 140 n n C2 C1 GQ5 sing 141 n n C1 N GQ5 sing 142 n n C1 C GQ5 sing 143 n n N5 C21 GQ5 sing 144 n y N5 C6 GQ5 doub 145 n y N C5 GQ5 sing 146 n n C20 C21 GQ5 doub 147 n y C20 C19 GQ5 sing 148 n y C5 C6 GQ5 sing 149 n n C21 C7 GQ5 sing 150 n y C6 N1 GQ5 sing 151 n y C19 C9 GQ5 doub 152 n y C7 N1 GQ5 sing 153 n y C7 C8 GQ5 doub 154 n y C9 C8 GQ5 sing 155 n y C9 N2 GQ5 sing 156 n n N2 C10 GQ5 sing 157 n n C10 O GQ5 doub 158 n n C10 C11 GQ5 sing 159 n n C12 C11 GQ5 doub 160 n y C12 C13 GQ5 sing 161 n y C11 C18 GQ5 sing 162 n y C14 C13 GQ5 sing 163 n y C14 N3 GQ5 doub 164 n y C13 C16 GQ5 doub 165 n y N3 N4 GQ5 sing 166 n y C18 C17 GQ5 doub 167 n y C16 C17 GQ5 sing 168 n y C16 N4 GQ5 sing 169 n y N4 C15 GQ5 sing 170 n n N1 H1 GQ5 sing 171 n n C2 H2 GQ5 sing 172 n n C2 H3 GQ5 sing 173 n n N2 H4 GQ5 sing 174 n n C4 H5 GQ5 sing 175 n n C4 H6 GQ5 sing 176 n n C18 H8 GQ5 sing 177 n n C17 H9 GQ5 sing 178 n n C15 H10 GQ5 sing 179 n n C15 H11 GQ5 sing 180 n n C15 H12 GQ5 sing 181 n n C14 H13 GQ5 sing 182 n n C12 H14 GQ5 sing 183 n n C8 H15 GQ5 sing 184 n n C19 H16 GQ5 sing 185 n n C20 H17 GQ5 sing 186 n n C5 H18 GQ5 sing 187 n n C5 H19 GQ5 sing 188 n n C1 H21 GQ5 sing 189 n n C H22 GQ5 sing 190 n n C H23 GQ5 sing 191 n n C H24 GQ5 sing 192 n n C3 H25 GQ5 sing 193 n n C3 H26 GQ5 sing 194 n n # _atom_sites.entry_id 6HT1 _atom_sites.fract_transf_matrix[1][1] 0.020474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 3 EDO A 1 203 5 EDO EDO . E 3 EDO A 1 204 6 EDO EDO . F 3 EDO A 1 205 7 EDO EDO . G 3 EDO A 1 206 8 EDO EDO . H 3 EDO A 1 207 9 EDO EDO . I 3 EDO A 1 208 10 EDO EDO . J 3 EDO A 1 209 11 EDO EDO . K 4 GQ5 A 1 210 1 GQ5 ZZZ . L 5 HOH A 1 301 34 HOH HOH . L 5 HOH A 2 302 59 HOH HOH . L 5 HOH A 3 303 15 HOH HOH . L 5 HOH A 4 304 45 HOH HOH . L 5 HOH A 5 305 43 HOH HOH . L 5 HOH A 6 306 36 HOH HOH . L 5 HOH A 7 307 51 HOH HOH . L 5 HOH A 8 308 41 HOH HOH . L 5 HOH A 9 309 2 HOH HOH . L 5 HOH A 10 310 11 HOH HOH . L 5 HOH A 11 311 21 HOH HOH . L 5 HOH A 12 312 7 HOH HOH . L 5 HOH A 13 313 54 HOH HOH . L 5 HOH A 14 314 30 HOH HOH . L 5 HOH A 15 315 39 HOH HOH . L 5 HOH A 16 316 20 HOH HOH . L 5 HOH A 17 317 27 HOH HOH . L 5 HOH A 18 318 9 HOH HOH . L 5 HOH A 19 319 52 HOH HOH . L 5 HOH A 20 320 29 HOH HOH . L 5 HOH A 21 321 58 HOH HOH . L 5 HOH A 22 322 35 HOH HOH . L 5 HOH A 23 323 8 HOH HOH . L 5 HOH A 24 324 17 HOH HOH . L 5 HOH A 25 325 13 HOH HOH . L 5 HOH A 26 326 55 HOH HOH . L 5 HOH A 27 327 40 HOH HOH . L 5 HOH A 28 328 49 HOH HOH . L 5 HOH A 29 329 16 HOH HOH . L 5 HOH A 30 330 4 HOH HOH . L 5 HOH A 31 331 14 HOH HOH . L 5 HOH A 32 332 10 HOH HOH . L 5 HOH A 33 333 44 HOH HOH . L 5 HOH A 34 334 19 HOH HOH . L 5 HOH A 35 335 57 HOH HOH . L 5 HOH A 36 336 46 HOH HOH . L 5 HOH A 37 337 5 HOH HOH . L 5 HOH A 38 338 1 HOH HOH . L 5 HOH A 39 339 12 HOH HOH . L 5 HOH A 40 340 37 HOH HOH . L 5 HOH A 41 341 32 HOH HOH . L 5 HOH A 42 342 6 HOH HOH . L 5 HOH A 43 343 22 HOH HOH . L 5 HOH A 44 344 60 HOH HOH . L 5 HOH A 45 345 50 HOH HOH . L 5 HOH A 46 346 3 HOH HOH . L 5 HOH A 47 347 48 HOH HOH . L 5 HOH A 48 348 53 HOH HOH . L 5 HOH A 49 349 56 HOH HOH . L 5 HOH A 50 350 38 HOH HOH . L 5 HOH A 51 351 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 GQ5 . . . K 4 -14.709 3.753 49.689 1 55.81 ? C7 GQ5 210 A 1 HETATM 2 C C9 GQ5 . . . K 4 -15.185 1.441 50.165 1 52.97 ? C9 GQ5 210 A 1 HETATM 3 N N1 GQ5 . . . K 4 -14.349 5.089 49.86 1 54.53 ? N1 GQ5 210 A 1 HETATM 4 C C2 GQ5 . . . K 4 -11.186 8.386 46.575 1 51.97 ? C2 GQ5 210 A 1 HETATM 5 N N2 GQ5 . . . K 4 -15.286 0.355 51.066 1 52.09 ? N2 GQ5 210 A 1 HETATM 6 C C10 GQ5 . . . K 4 -15.124 0.372 52.414 1 54.87 ? C10 GQ5 210 A 1 HETATM 7 C C4 GQ5 . . . K 4 -12.56 6.407 46.559 1 54.07 ? C4 GQ5 210 A 1 HETATM 8 N N3 GQ5 . . . K 4 -16.351 -5.273 54.154 1 61.63 ? N3 GQ5 210 A 1 HETATM 9 N N5 GQ5 . . . K 4 -14.925 4.759 47.734 1 50.76 ? N5 GQ5 210 A 1 HETATM 10 C C6 GQ5 . . . K 4 -14.487 5.635 48.666 1 55.16 ? C6 GQ5 210 A 1 HETATM 11 O O GQ5 . . . K 4 -15.056 1.405 53.077 1 55.84 ? O GQ5 210 A 1 HETATM 12 C C11 GQ5 . . . K 4 -15.143 -0.961 53.085 1 64.81 ? C11 GQ5 210 A 1 HETATM 13 C C18 GQ5 . . . K 4 -14.289 -1.183 54.17 1 70.68 ? C18 GQ5 210 A 1 HETATM 14 C C17 GQ5 . . . K 4 -14.276 -2.401 54.836 1 73.18 ? C17 GQ5 210 A 1 HETATM 15 C C16 GQ5 . . . K 4 -15.149 -3.388 54.415 1 66.64 ? C16 GQ5 210 A 1 HETATM 16 N N4 GQ5 . . . K 4 -15.339 -4.662 54.837 1 65.95 ? N4 GQ5 210 A 1 HETATM 17 C C15 GQ5 . . . K 4 -14.557 -5.411 55.804 1 65.23 ? C15 GQ5 210 A 1 HETATM 18 C C14 GQ5 . . . K 4 -16.779 -4.394 53.273 1 66.36 ? C14 GQ5 210 A 1 HETATM 19 C C13 GQ5 . . . K 4 -16.051 -3.175 53.363 1 65.17 ? C13 GQ5 210 A 1 HETATM 20 C C12 GQ5 . . . K 4 -16.025 -1.965 52.674 1 67.09 ? C12 GQ5 210 A 1 HETATM 21 C C8 GQ5 . . . K 4 -14.751 2.698 50.597 1 52.33 ? C8 GQ5 210 A 1 HETATM 22 C C19 GQ5 . . . K 4 -15.583 1.248 48.834 1 55.5 ? C19 GQ5 210 A 1 HETATM 23 C C20 GQ5 . . . K 4 -15.539 2.297 47.923 1 55.83 ? C20 GQ5 210 A 1 HETATM 24 C C21 GQ5 . . . K 4 -15.088 3.539 48.367 1 58.76 ? C21 GQ5 210 A 1 HETATM 25 C C5 GQ5 . . . K 4 -14.144 7.051 48.331 1 60.28 ? C5 GQ5 210 A 1 HETATM 26 N N GQ5 . . . K 4 -12.78 7.185 47.797 1 56.74 ? N GQ5 210 A 1 HETATM 27 C C1 GQ5 . . . K 4 -12.426 8.585 47.436 1 54.14 ? C1 GQ5 210 A 1 HETATM 28 C C GQ5 . . . K 4 -12.19 9.47 48.641 1 53.92 ? C GQ5 210 A 1 HETATM 29 C C3 GQ5 . . . K 4 -11.623 7.269 45.69 1 54.62 ? C3 GQ5 210 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #