data_6HT1
#
_model_server_result.job_id            QTNJ0Bq95Rc-BD4Ku_7AQQ 
_model_server_result.datetime_utc      '2024-11-06 14:26:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ht1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":210}' 
#
_entry.id    6HT1 
#
_exptl.entry_id    6HT1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              388.466 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-methyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HT1 
_cell.length_a            48.842 
_cell.length_b            48.842 
_cell.length_c            133.238 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HT1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H24 N6 O' 
_chem_comp.formula_weight    388.466 
_chem_comp.id                GQ5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-methyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C4 GQ5 sing 138 n n 
C3 C2 GQ5 sing 139 n n 
C4 N GQ5 sing 140 n n 
C2 C1 GQ5 sing 141 n n 
C1 N GQ5 sing 142 n n 
C1 C GQ5 sing 143 n n 
N5 C21 GQ5 sing 144 n y 
N5 C6 GQ5 doub 145 n y 
N C5 GQ5 sing 146 n n 
C20 C21 GQ5 doub 147 n y 
C20 C19 GQ5 sing 148 n y 
C5 C6 GQ5 sing 149 n n 
C21 C7 GQ5 sing 150 n y 
C6 N1 GQ5 sing 151 n y 
C19 C9 GQ5 doub 152 n y 
C7 N1 GQ5 sing 153 n y 
C7 C8 GQ5 doub 154 n y 
C9 C8 GQ5 sing 155 n y 
C9 N2 GQ5 sing 156 n n 
N2 C10 GQ5 sing 157 n n 
C10 O GQ5 doub 158 n n 
C10 C11 GQ5 sing 159 n n 
C12 C11 GQ5 doub 160 n y 
C12 C13 GQ5 sing 161 n y 
C11 C18 GQ5 sing 162 n y 
C14 C13 GQ5 sing 163 n y 
C14 N3 GQ5 doub 164 n y 
C13 C16 GQ5 doub 165 n y 
N3 N4 GQ5 sing 166 n y 
C18 C17 GQ5 doub 167 n y 
C16 C17 GQ5 sing 168 n y 
C16 N4 GQ5 sing 169 n y 
N4 C15 GQ5 sing 170 n n 
N1 H1 GQ5 sing 171 n n 
C2 H2 GQ5 sing 172 n n 
C2 H3 GQ5 sing 173 n n 
N2 H4 GQ5 sing 174 n n 
C4 H5 GQ5 sing 175 n n 
C4 H6 GQ5 sing 176 n n 
C18 H8 GQ5 sing 177 n n 
C17 H9 GQ5 sing 178 n n 
C15 H10 GQ5 sing 179 n n 
C15 H11 GQ5 sing 180 n n 
C15 H12 GQ5 sing 181 n n 
C14 H13 GQ5 sing 182 n n 
C12 H14 GQ5 sing 183 n n 
C8 H15 GQ5 sing 184 n n 
C19 H16 GQ5 sing 185 n n 
C20 H17 GQ5 sing 186 n n 
C5 H18 GQ5 sing 187 n n 
C5 H19 GQ5 sing 188 n n 
C1 H21 GQ5 sing 189 n n 
C H22 GQ5 sing 190 n n 
C H23 GQ5 sing 191 n n 
C H24 GQ5 sing 192 n n 
C3 H25 GQ5 sing 193 n n 
C3 H26 GQ5 sing 194 n n 
#
_atom_sites.entry_id                     6HT1 
_atom_sites.fract_transf_matrix[1][1]    0.020474 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020474 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 201 1 SO4 SO4 . 
C 2 SO4 A 1 202 2 SO4 SO4 . 
D 3 EDO A 1 203 5 EDO EDO . 
E 3 EDO A 1 204 6 EDO EDO . 
F 3 EDO A 1 205 7 EDO EDO . 
G 3 EDO A 1 206 8 EDO EDO . 
H 3 EDO A 1 207 9 EDO EDO . 
I 3 EDO A 1 208 10 EDO EDO . 
J 3 EDO A 1 209 11 EDO EDO . 
K 4 GQ5 A 1 210 1 GQ5 ZZZ . 
L 5 HOH A 1 301 34 HOH HOH . 
L 5 HOH A 2 302 59 HOH HOH . 
L 5 HOH A 3 303 15 HOH HOH . 
L 5 HOH A 4 304 45 HOH HOH . 
L 5 HOH A 5 305 43 HOH HOH . 
L 5 HOH A 6 306 36 HOH HOH . 
L 5 HOH A 7 307 51 HOH HOH . 
L 5 HOH A 8 308 41 HOH HOH . 
L 5 HOH A 9 309 2 HOH HOH . 
L 5 HOH A 10 310 11 HOH HOH . 
L 5 HOH A 11 311 21 HOH HOH . 
L 5 HOH A 12 312 7 HOH HOH . 
L 5 HOH A 13 313 54 HOH HOH . 
L 5 HOH A 14 314 30 HOH HOH . 
L 5 HOH A 15 315 39 HOH HOH . 
L 5 HOH A 16 316 20 HOH HOH . 
L 5 HOH A 17 317 27 HOH HOH . 
L 5 HOH A 18 318 9 HOH HOH . 
L 5 HOH A 19 319 52 HOH HOH . 
L 5 HOH A 20 320 29 HOH HOH . 
L 5 HOH A 21 321 58 HOH HOH . 
L 5 HOH A 22 322 35 HOH HOH . 
L 5 HOH A 23 323 8 HOH HOH . 
L 5 HOH A 24 324 17 HOH HOH . 
L 5 HOH A 25 325 13 HOH HOH . 
L 5 HOH A 26 326 55 HOH HOH . 
L 5 HOH A 27 327 40 HOH HOH . 
L 5 HOH A 28 328 49 HOH HOH . 
L 5 HOH A 29 329 16 HOH HOH . 
L 5 HOH A 30 330 4 HOH HOH . 
L 5 HOH A 31 331 14 HOH HOH . 
L 5 HOH A 32 332 10 HOH HOH . 
L 5 HOH A 33 333 44 HOH HOH . 
L 5 HOH A 34 334 19 HOH HOH . 
L 5 HOH A 35 335 57 HOH HOH . 
L 5 HOH A 36 336 46 HOH HOH . 
L 5 HOH A 37 337 5 HOH HOH . 
L 5 HOH A 38 338 1 HOH HOH . 
L 5 HOH A 39 339 12 HOH HOH . 
L 5 HOH A 40 340 37 HOH HOH . 
L 5 HOH A 41 341 32 HOH HOH . 
L 5 HOH A 42 342 6 HOH HOH . 
L 5 HOH A 43 343 22 HOH HOH . 
L 5 HOH A 44 344 60 HOH HOH . 
L 5 HOH A 45 345 50 HOH HOH . 
L 5 HOH A 46 346 3 HOH HOH . 
L 5 HOH A 47 347 48 HOH HOH . 
L 5 HOH A 48 348 53 HOH HOH . 
L 5 HOH A 49 349 56 HOH HOH . 
L 5 HOH A 50 350 38 HOH HOH . 
L 5 HOH A 51 351 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 GQ5 . . . K 4 -14.709 3.753 49.689 1 55.81 ? C7 GQ5 210 A 1 
HETATM 2 C C9 GQ5 . . . K 4 -15.185 1.441 50.165 1 52.97 ? C9 GQ5 210 A 1 
HETATM 3 N N1 GQ5 . . . K 4 -14.349 5.089 49.86 1 54.53 ? N1 GQ5 210 A 1 
HETATM 4 C C2 GQ5 . . . K 4 -11.186 8.386 46.575 1 51.97 ? C2 GQ5 210 A 1 
HETATM 5 N N2 GQ5 . . . K 4 -15.286 0.355 51.066 1 52.09 ? N2 GQ5 210 A 1 
HETATM 6 C C10 GQ5 . . . K 4 -15.124 0.372 52.414 1 54.87 ? C10 GQ5 210 A 1 
HETATM 7 C C4 GQ5 . . . K 4 -12.56 6.407 46.559 1 54.07 ? C4 GQ5 210 A 1 
HETATM 8 N N3 GQ5 . . . K 4 -16.351 -5.273 54.154 1 61.63 ? N3 GQ5 210 A 1 
HETATM 9 N N5 GQ5 . . . K 4 -14.925 4.759 47.734 1 50.76 ? N5 GQ5 210 A 1 
HETATM 10 C C6 GQ5 . . . K 4 -14.487 5.635 48.666 1 55.16 ? C6 GQ5 210 A 1 
HETATM 11 O O GQ5 . . . K 4 -15.056 1.405 53.077 1 55.84 ? O GQ5 210 A 1 
HETATM 12 C C11 GQ5 . . . K 4 -15.143 -0.961 53.085 1 64.81 ? C11 GQ5 210 A 1 
HETATM 13 C C18 GQ5 . . . K 4 -14.289 -1.183 54.17 1 70.68 ? C18 GQ5 210 A 1 
HETATM 14 C C17 GQ5 . . . K 4 -14.276 -2.401 54.836 1 73.18 ? C17 GQ5 210 A 1 
HETATM 15 C C16 GQ5 . . . K 4 -15.149 -3.388 54.415 1 66.64 ? C16 GQ5 210 A 1 
HETATM 16 N N4 GQ5 . . . K 4 -15.339 -4.662 54.837 1 65.95 ? N4 GQ5 210 A 1 
HETATM 17 C C15 GQ5 . . . K 4 -14.557 -5.411 55.804 1 65.23 ? C15 GQ5 210 A 1 
HETATM 18 C C14 GQ5 . . . K 4 -16.779 -4.394 53.273 1 66.36 ? C14 GQ5 210 A 1 
HETATM 19 C C13 GQ5 . . . K 4 -16.051 -3.175 53.363 1 65.17 ? C13 GQ5 210 A 1 
HETATM 20 C C12 GQ5 . . . K 4 -16.025 -1.965 52.674 1 67.09 ? C12 GQ5 210 A 1 
HETATM 21 C C8 GQ5 . . . K 4 -14.751 2.698 50.597 1 52.33 ? C8 GQ5 210 A 1 
HETATM 22 C C19 GQ5 . . . K 4 -15.583 1.248 48.834 1 55.5 ? C19 GQ5 210 A 1 
HETATM 23 C C20 GQ5 . . . K 4 -15.539 2.297 47.923 1 55.83 ? C20 GQ5 210 A 1 
HETATM 24 C C21 GQ5 . . . K 4 -15.088 3.539 48.367 1 58.76 ? C21 GQ5 210 A 1 
HETATM 25 C C5 GQ5 . . . K 4 -14.144 7.051 48.331 1 60.28 ? C5 GQ5 210 A 1 
HETATM 26 N N GQ5 . . . K 4 -12.78 7.185 47.797 1 56.74 ? N GQ5 210 A 1 
HETATM 27 C C1 GQ5 . . . K 4 -12.426 8.585 47.436 1 54.14 ? C1 GQ5 210 A 1 
HETATM 28 C C GQ5 . . . K 4 -12.19 9.47 48.641 1 53.92 ? C GQ5 210 A 1 
HETATM 29 C C3 GQ5 . . . K 4 -11.623 7.269 45.69 1 54.62 ? C3 GQ5 210 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           29 
#