data_6HT9 # _model_server_result.job_id g6e2JWIWCQPNUH21r3ngEQ _model_server_result.datetime_utc '2024-11-24 11:01:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ht9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1002}' # _entry.id 6HT9 # _exptl.entry_id 6HT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HT9 _cell.length_a 83.4 _cell.length_b 85.8 _cell.length_c 168.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,N,O 1 1 C,D,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N ? 6 M N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG B 1011 NAG 3 n E NAG 2 E 2 NAG B 1012 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 91 A CYS 42 1_555 A SG CYS 247 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 113 A CYS 64 1_555 A SG CYS 133 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 21 B CYS 39 1_555 B SG CYS 356 B CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 78 B CYS 96 1_555 B SG CYS 89 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 B SG CYS 102 B CYS 120 1_555 B SG CYS 122 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 B SG CYS 136 B CYS 154 1_555 B SG CYS 139 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 219 B CYS 237 1_555 B SG CYS 245 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 C SG CYS 91 C CYS 42 1_555 C SG CYS 247 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf9 C SG CYS 113 C CYS 64 1_555 C SG CYS 133 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf10 D SG CYS 21 D CYS 39 1_555 D SG CYS 356 D CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 D SG CYS 78 D CYS 96 1_555 D SG CYS 89 D CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 D SG CYS 102 D CYS 120 1_555 D SG CYS 122 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 D SG CYS 136 D CYS 154 1_555 D SG CYS 139 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf14 D SG CYS 219 D CYS 237 1_555 D SG CYS 245 D CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 B ND2 ASN 22 B ASN 40 1_555 H C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B ND2 ASN 121 B ASN 139 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 D ND2 ASN 22 D ASN 40 1_555 L C1 NAG . D NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 D ND2 ASN 121 D ASN 139 1_555 M C1 NAG . D NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 A NE2 HIS 141 A HIS 92 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 A NE2 HIS 145 A HIS 96 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 A NE2 HIS 151 A HIS 102 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A OH TYR 198 A TYR 149 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc5 F ZN ZN . A ZN 301 1_555 B OD1 ASP 138 B ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 F ZN ZN . A ZN 301 1_555 B OD2 ASP 138 B ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc7 C NE2 HIS 141 C HIS 92 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 C NE2 HIS 145 C HIS 96 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc9 C NE2 HIS 151 C HIS 102 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 C OH TYR 198 C TYR 149 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc11 K ZN ZN . C ZN 301 1_555 D OD1 ASP 138 D ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc12 K ZN ZN . C ZN 301 1_555 D OD2 ASP 138 D ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HT9 _atom_sites.fract_transf_matrix[1][1] 0.01199 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 ZN A 1 301 999 ZN ZN . G 5 GOL A 1 302 1 GOL GOL . H 6 NAG B 1 1001 1001 NAG NAG . I 5 GOL B 1 1004 2 GOL GOL . J 5 GOL B 1 1005 3 GOL GOL . K 4 ZN C 1 301 999 ZN ZN . L 6 NAG D 1 1001 1001 NAG NAG . M 6 NAG D 1 1002 1011 NAG NAG . N 7 HOH A 1 401 23 HOH HOH . N 7 HOH A 2 402 26 HOH HOH . N 7 HOH A 3 403 7 HOH HOH . N 7 HOH A 4 404 29 HOH HOH . N 7 HOH A 5 405 24 HOH HOH . N 7 HOH A 6 406 4 HOH HOH . N 7 HOH A 7 407 45 HOH HOH . N 7 HOH A 8 408 33 HOH HOH . N 7 HOH A 9 409 48 HOH HOH . N 7 HOH A 10 410 18 HOH HOH . N 7 HOH A 11 411 12 HOH HOH . N 7 HOH A 12 412 5 HOH HOH . N 7 HOH A 13 413 14 HOH HOH . N 7 HOH A 14 414 20 HOH HOH . N 7 HOH A 15 415 34 HOH HOH . N 7 HOH A 16 416 35 HOH HOH . N 7 HOH A 17 417 32 HOH HOH . N 7 HOH A 18 418 6 HOH HOH . O 7 HOH B 1 1101 37 HOH HOH . O 7 HOH B 2 1102 10 HOH HOH . O 7 HOH B 3 1103 36 HOH HOH . O 7 HOH B 4 1104 9 HOH HOH . O 7 HOH B 5 1105 19 HOH HOH . O 7 HOH B 6 1106 38 HOH HOH . O 7 HOH B 7 1107 27 HOH HOH . O 7 HOH B 8 1108 16 HOH HOH . O 7 HOH B 9 1109 39 HOH HOH . O 7 HOH B 10 1110 8 HOH HOH . O 7 HOH B 11 1111 40 HOH HOH . P 7 HOH C 1 401 22 HOH HOH . P 7 HOH C 2 402 25 HOH HOH . P 7 HOH C 3 403 41 HOH HOH . P 7 HOH C 4 404 43 HOH HOH . P 7 HOH C 5 405 15 HOH HOH . P 7 HOH C 6 406 30 HOH HOH . P 7 HOH C 7 407 31 HOH HOH . P 7 HOH C 8 408 11 HOH HOH . Q 7 HOH D 1 1101 44 HOH HOH . Q 7 HOH D 2 1102 47 HOH HOH . Q 7 HOH D 3 1103 49 HOH HOH . Q 7 HOH D 4 1104 17 HOH HOH . Q 7 HOH D 5 1105 13 HOH HOH . Q 7 HOH D 6 1106 42 HOH HOH . Q 7 HOH D 7 1107 46 HOH HOH . Q 7 HOH D 8 1108 28 HOH HOH . Q 7 HOH D 9 1109 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 6 55.35 76.298 83.435 1 164.67 ? C1 NAG 1002 D 1 HETATM 2 C C2 NAG . . . M 6 56.122 77.598 83.666 1 168.16 ? C2 NAG 1002 D 1 HETATM 3 C C3 NAG . . . M 6 57.572 77.233 83.998 1 170.24 ? C3 NAG 1002 D 1 HETATM 4 C C4 NAG . . . M 6 57.648 76.242 85.16 1 170.78 ? C4 NAG 1002 D 1 HETATM 5 C C5 NAG . . . M 6 56.764 75.018 84.909 1 165.85 ? C5 NAG 1002 D 1 HETATM 6 C C6 NAG . . . M 6 56.652 74.1 86.111 1 165.44 ? C6 NAG 1002 D 1 HETATM 7 C C7 NAG . . . M 6 56.103 79.772 82.477 1 166.64 ? C7 NAG 1002 D 1 HETATM 8 C C8 NAG . . . M 6 56.216 80.431 81.134 1 164.94 ? C8 NAG 1002 D 1 HETATM 9 N N2 NAG . . . M 6 56.067 78.427 82.469 1 165.76 ? N2 NAG 1002 D 1 HETATM 10 O O3 NAG . . . M 6 58.293 78.416 84.333 1 174.44 ? O3 NAG 1002 D 1 HETATM 11 O O4 NAG . . . M 6 58.993 75.802 85.322 1 172.25 ? O4 NAG 1002 D 1 HETATM 12 O O5 NAG . . . M 6 55.426 75.437 84.58 1 165.22 ? O5 NAG 1002 D 1 HETATM 13 O O6 NAG . . . M 6 57.923 73.625 86.554 1 165.08 ? O6 NAG 1002 D 1 HETATM 14 O O7 NAG . . . M 6 56.063 80.423 83.518 1 169.39 ? O7 NAG 1002 D 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 14 #