data_6HT9
#
_model_server_result.job_id            '_nfQ6SnjbjIYbhHp3S63gw' 
_model_server_result.datetime_utc      '2024-11-28 03:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ht9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1005}' 
#
_entry.id    6HT9 
#
_exptl.entry_id    6HT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HT9 
_cell.length_a            83.4 
_cell.length_b            85.8 
_cell.length_c            168.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,N,O 1 1 
C,D,K,L,M,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 I N N 
? 5 J N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n E NAG 1 E 1 NAG B 1011 NAG 
3 n E NAG 2 E 2 NAG B 1012 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 91 A CYS 42 1_555 A SG CYS 247 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 113 A CYS 64 1_555 A SG CYS 133 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 B SG CYS 21 B CYS 39 1_555 B SG CYS 356 B CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 B SG CYS 78 B CYS 96 1_555 B SG CYS 89 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 B SG CYS 102 B CYS 120 1_555 B SG CYS 122 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 136 B CYS 154 1_555 B SG CYS 139 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 B SG CYS 219 B CYS 237 1_555 B SG CYS 245 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf8 C SG CYS 91 C CYS 42 1_555 C SG CYS 247 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf9 C SG CYS 113 C CYS 64 1_555 C SG CYS 133 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf10 D SG CYS 21 D CYS 39 1_555 D SG CYS 356 D CYS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 D SG CYS 78 D CYS 96 1_555 D SG CYS 89 D CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf12 D SG CYS 102 D CYS 120 1_555 D SG CYS 122 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf13 D SG CYS 136 D CYS 154 1_555 D SG CYS 139 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf14 D SG CYS 219 D CYS 237 1_555 D SG CYS 245 D CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 B ND2 ASN 22 B ASN 40 1_555 H C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 B ND2 ASN 121 B ASN 139 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale3 D ND2 ASN 22 D ASN 40 1_555 L C1 NAG . D NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale4 D ND2 ASN 121 D ASN 139 1_555 M C1 NAG . D NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale5 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
metalc ? metalc1 A NE2 HIS 141 A HIS 92 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc2 A NE2 HIS 145 A HIS 96 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc3 A NE2 HIS 151 A HIS 102 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc4 A OH TYR 198 A TYR 149 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc5 F ZN ZN . A ZN 301 1_555 B OD1 ASP 138 B ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc6 F ZN ZN . A ZN 301 1_555 B OD2 ASP 138 B ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc7 C NE2 HIS 141 C HIS 92 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc8 C NE2 HIS 145 C HIS 96 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc9 C NE2 HIS 151 C HIS 102 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc10 C OH TYR 198 C TYR 149 1_555 K ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc11 K ZN ZN . C ZN 301 1_555 D OD1 ASP 138 D ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc12 K ZN ZN . C ZN 301 1_555 D OD2 ASP 138 D ASP 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6HT9 
_atom_sites.fract_transf_matrix[1][1]    0.01199 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011655 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 ZN A 1 301 999 ZN ZN . 
G 5 GOL A 1 302 1 GOL GOL . 
H 6 NAG B 1 1001 1001 NAG NAG . 
I 5 GOL B 1 1004 2 GOL GOL . 
J 5 GOL B 1 1005 3 GOL GOL . 
K 4 ZN C 1 301 999 ZN ZN . 
L 6 NAG D 1 1001 1001 NAG NAG . 
M 6 NAG D 1 1002 1011 NAG NAG . 
N 7 HOH A 1 401 23 HOH HOH . 
N 7 HOH A 2 402 26 HOH HOH . 
N 7 HOH A 3 403 7 HOH HOH . 
N 7 HOH A 4 404 29 HOH HOH . 
N 7 HOH A 5 405 24 HOH HOH . 
N 7 HOH A 6 406 4 HOH HOH . 
N 7 HOH A 7 407 45 HOH HOH . 
N 7 HOH A 8 408 33 HOH HOH . 
N 7 HOH A 9 409 48 HOH HOH . 
N 7 HOH A 10 410 18 HOH HOH . 
N 7 HOH A 11 411 12 HOH HOH . 
N 7 HOH A 12 412 5 HOH HOH . 
N 7 HOH A 13 413 14 HOH HOH . 
N 7 HOH A 14 414 20 HOH HOH . 
N 7 HOH A 15 415 34 HOH HOH . 
N 7 HOH A 16 416 35 HOH HOH . 
N 7 HOH A 17 417 32 HOH HOH . 
N 7 HOH A 18 418 6 HOH HOH . 
O 7 HOH B 1 1101 37 HOH HOH . 
O 7 HOH B 2 1102 10 HOH HOH . 
O 7 HOH B 3 1103 36 HOH HOH . 
O 7 HOH B 4 1104 9 HOH HOH . 
O 7 HOH B 5 1105 19 HOH HOH . 
O 7 HOH B 6 1106 38 HOH HOH . 
O 7 HOH B 7 1107 27 HOH HOH . 
O 7 HOH B 8 1108 16 HOH HOH . 
O 7 HOH B 9 1109 39 HOH HOH . 
O 7 HOH B 10 1110 8 HOH HOH . 
O 7 HOH B 11 1111 40 HOH HOH . 
P 7 HOH C 1 401 22 HOH HOH . 
P 7 HOH C 2 402 25 HOH HOH . 
P 7 HOH C 3 403 41 HOH HOH . 
P 7 HOH C 4 404 43 HOH HOH . 
P 7 HOH C 5 405 15 HOH HOH . 
P 7 HOH C 6 406 30 HOH HOH . 
P 7 HOH C 7 407 31 HOH HOH . 
P 7 HOH C 8 408 11 HOH HOH . 
Q 7 HOH D 1 1101 44 HOH HOH . 
Q 7 HOH D 2 1102 47 HOH HOH . 
Q 7 HOH D 3 1103 49 HOH HOH . 
Q 7 HOH D 4 1104 17 HOH HOH . 
Q 7 HOH D 5 1105 13 HOH HOH . 
Q 7 HOH D 6 1106 42 HOH HOH . 
Q 7 HOH D 7 1107 46 HOH HOH . 
Q 7 HOH D 8 1108 28 HOH HOH . 
Q 7 HOH D 9 1109 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 5 -8.389 -1.224 61.062 1 113.11 ? C1 GOL 1005 B 1 
HETATM 2 O O1 GOL . . . J 5 -7.961 -0.049 60.383 1 111.81 ? O1 GOL 1005 B 1 
HETATM 3 C C2 GOL . . . J 5 -7.916 -2.483 60.367 1 112.77 ? C2 GOL 1005 B 1 
HETATM 4 O O2 GOL . . . J 5 -6.516 -2.378 60.075 1 110.64 ? O2 GOL 1005 B 1 
HETATM 5 C C3 GOL . . . J 5 -8.179 -3.685 61.251 1 112.76 ? C3 GOL 1005 B 1 
HETATM 6 O O3 GOL . . . J 5 -8.094 -4.916 60.536 1 111.56 ? O3 GOL 1005 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#