data_6HUJ # _model_server_result.job_id gzxFo3xeSJ2eeiloOHa-Yw _model_server_result.datetime_utc '2024-11-21 14:37:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6huj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":509}' # _entry.id 6HUJ # _exptl.entry_id 6HUJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 292.284 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HUJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 5 6 4 MAN MAN C1 O1 . O6 HO6 . sing 6 ? 5 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 6 4 3 MAN BMA C1 O1 . O6 HO6 . sing 10 ? 6 5 4 MAN MAN C1 O1 . O3 HO3 . sing 11 ? 6 6 3 MAN BMA C1 O1 . O3 HO3 . sing 12 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 13 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 14 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 15 ? 8 4 3 MAN BMA C1 O1 . O3 HO3 . sing 16 ? 8 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n G NAG 1 F 1 NAG R 3000 NAG 5 n G NAG 2 F 2 NAG R 3001 NAG 5 n G BMA 3 F 3 BMA R 3002 BMA 5 n G MAN 4 F 4 MAN R 3003 MAN 5 n G MAN 5 F 5 MAN R 3009 MAN 5 n G MAN 6 F 6 MAN R 3004 MAN 5 n G MAN 7 F 7 MAN R 3008 MAN 6 n H NAG 1 H 1 NAG S 3000 NAG 6 n H NAG 2 H 2 NAG S 3001 NAG 6 n H BMA 3 H 3 BMA S 3002 BMA 6 n H MAN 4 H 4 MAN S 3003 MAN 6 n H MAN 5 H 5 MAN S 3005 MAN 6 n H MAN 6 H 6 MAN S 3004 MAN 7 n I NAG 1 I 1 NAG O 2000 NAG 7 n I NAG 2 I 2 NAG O 2001 NAG 7 n J NAG 1 J 1 NAG T 3000 NAG 7 n J NAG 2 J 2 NAG T 3001 NAG 8 n K NAG 1 K 1 NAG U 3000 NAG 8 n K NAG 2 K 2 NAG U 3001 NAG 8 n K BMA 3 K 3 BMA U 3002 BMA 8 n K MAN 4 K 4 MAN U 3008 MAN 8 n K MAN 5 K 5 MAN U 3003 MAN 7 n L NAG 1 L 1 NAG P 2000 NAG 7 n L NAG 2 L 2 NAG P 2001 NAG 6 n M NAG 1 M 1 NAG V 3000 NAG 6 n M NAG 2 M 2 NAG V 3001 NAG 6 n M BMA 3 M 3 BMA V 3002 BMA 6 n M MAN 4 M 4 MAN V 3003 MAN 6 n M MAN 5 M 5 MAN V 3005 MAN 6 n M MAN 6 M 6 MAN V 3004 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 139 1_555 A SG CYS 188 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 161 B CYS 136 1_555 B SG CYS 175 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 C SG CYS 190 C CYS 151 1_555 C SG CYS 204 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 D SG CYS 174 D CYS 139 1_555 D SG CYS 188 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 161 E CYS 136 1_555 E SG CYS 175 E CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 F SG CYS 428 G CYS 428 1_555 F SG CYS 501 G CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 146 A ASN 111 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B ND2 ASN 105 B ASN 80 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 174 B ASN 149 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C ND2 ASN 247 C ASN 208 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 D ND2 ASN 146 D ASN 111 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 E ND2 ASN 105 E ASN 80 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 E ND2 ASN 174 E ASN 149 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale8 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale9 G O4 NAG . F NAG 2 1_555 G C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale10 G O6 BMA . F BMA 3 1_555 G C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale11 G O3 BMA . F BMA 3 1_555 G C1 MAN . F MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale12 G O3 MAN . F MAN 4 1_555 G C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale13 G O6 MAN . F MAN 4 1_555 G C1 MAN . F MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale15 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale16 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale17 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale18 H O3 MAN . H MAN 4 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale19 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale20 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale21 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale23 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale24 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale25 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale26 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale27 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale28 M O6 BMA . M BMA 3 1_555 M C1 MAN . M MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale29 M O3 BMA . M BMA 3 1_555 M C1 MAN . M MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale30 M O3 MAN . M MAN 4 1_555 M C1 MAN . M MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? # _chem_comp.formula 'C15 H16 O6' _chem_comp.formula_weight 292.284 _chem_comp.id RI5 _chem_comp.mon_nstd_flag . _chem_comp.name '(1aR,2aR,3S,6R,6aS,8aS,8bR,9R)-2a-hydroxy-8b-methyl-9-(prop-1-en-2-yl)hexahydro-3,6-methano-1,5,7-trioxacyclopenta[ij]c yclopropa[a]azulene-4,8(3H)-dione' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PICROTOXIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 RI5 sing 464 n n C01 H01 RI5 sing 465 n n C01 H01A RI5 sing 466 n n C01 H01B RI5 sing 467 n n C02 C03 RI5 doub 468 n n C02 C04 RI5 sing 469 n n C03 H03 RI5 sing 470 n n C03 H03A RI5 sing 471 n n C05 C04 RI5 sing 472 n n C04 C09 RI5 sing 473 n n C04 H04 RI5 sing 474 n n C06 C05 RI5 sing 475 n n C05 O12 RI5 sing 476 n n C05 H05 RI5 sing 477 n n C06 O19 RI5 sing 478 n n C06 C07 RI5 sing 479 n n C06 H06 RI5 sing 480 n n C21 C07 RI5 sing 481 n n C07 C15 RI5 sing 482 n n C07 C08 RI5 sing 483 n n O20 C08 RI5 sing 484 n n C08 C09 RI5 sing 485 n n C08 C13 RI5 sing 486 n n C09 C10 RI5 sing 487 n n C09 H09 RI5 sing 488 n n O12 C10 RI5 sing 489 n n C10 O11 RI5 doub 490 n n C14 C13 RI5 sing 491 n n C13 H13 RI5 sing 492 n n C13 H13A RI5 sing 493 n n C15 C14 RI5 sing 494 n n O16 C14 RI5 sing 495 n n C14 H14 RI5 sing 496 n n C17 C15 RI5 sing 497 n n C15 O16 RI5 sing 498 n n O19 C17 RI5 sing 499 n n C17 O18 RI5 doub 500 n n O20 HO20 RI5 sing 501 n n C21 H21 RI5 sing 502 n n C21 H21A RI5 sing 503 n n C21 H21B RI5 sing 504 n n # _atom_sites.entry_id 6HUJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 9 PIO A 1 508 1 PIO PIO . O 10 RI5 A 1 509 1 RI5 PTX . P 11 ABU A 1 510 1 ABU ABU . Q 9 PIO D 1 506 1 PIO PIO . R 11 ABU D 1 507 1 ABU ABU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 RI5 . . . O 10 138.904 136.635 110.582 1 30.5 ? C01 RI5 509 A 1 HETATM 2 C C02 RI5 . . . O 10 139.639 135.761 109.644 1 30.5 ? C02 RI5 509 A 1 HETATM 3 C C03 RI5 . . . O 10 140.95 135.564 109.776 1 30.5 ? C03 RI5 509 A 1 HETATM 4 C C04 RI5 . . . O 10 138.732 135.112 108.621 1 30.5 ? C04 RI5 509 A 1 HETATM 5 C C05 RI5 . . . O 10 139.247 134.274 107.43 1 30.5 ? C05 RI5 509 A 1 HETATM 6 C C06 RI5 . . . O 10 140.133 135.021 106.441 1 30.5 ? C06 RI5 509 A 1 HETATM 7 C C07 RI5 . . . O 10 139.576 136.479 106.148 1 30.5 ? C07 RI5 509 A 1 HETATM 8 C C08 RI5 . . . O 10 138.3 136.999 106.897 1 30.5 ? C08 RI5 509 A 1 HETATM 9 C C09 RI5 . . . O 10 137.68 135.931 107.844 1 30.5 ? C09 RI5 509 A 1 HETATM 10 C C10 RI5 . . . O 10 137.082 134.84 106.986 1 30.5 ? C10 RI5 509 A 1 HETATM 11 O O11 RI5 . . . O 10 135.96 134.724 106.578 1 30.5 ? O11 RI5 509 A 1 HETATM 12 O O12 RI5 . . . O 10 138.02 133.9 106.74 1 30.5 ? O12 RI5 509 A 1 HETATM 13 C C13 RI5 . . . O 10 137.361 137.529 105.782 1 30.5 ? C13 RI5 509 A 1 HETATM 14 C C14 RI5 . . . O 10 137.908 137.013 104.45 1 30.5 ? C14 RI5 509 A 1 HETATM 15 C C15 RI5 . . . O 10 139.228 136.399 104.684 1 30.5 ? C15 RI5 509 A 1 HETATM 16 O O16 RI5 . . . O 10 139.115 137.676 104.021 1 30.5 ? O16 RI5 509 A 1 HETATM 17 C C17 RI5 . . . O 10 140.013 135.238 104.155 1 30.5 ? C17 RI5 509 A 1 HETATM 18 O O18 RI5 . . . O 10 140.477 135.058 103.066 1 30.5 ? O18 RI5 509 A 1 HETATM 19 O O19 RI5 . . . O 10 140.152 134.344 105.152 1 30.5 ? O19 RI5 509 A 1 HETATM 20 O O20 RI5 . . . O 10 138.639 138.142 107.687 1 30.5 ? O20 RI5 509 A 1 HETATM 21 C C21 RI5 . . . O 10 140.762 137.403 106.389 1 30.5 ? C21 RI5 509 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #