data_6HUL # _model_server_result.job_id KYVNYJIc1A1P7VEg2NTCFA _model_server_result.datetime_utc '2024-12-21 14:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6HUL # _exptl.entry_id 6HUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.074 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SN-GLYCEROL-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HUL _cell.length_a 128.98 _cell.length_b 128.98 _cell.length_c 217.37 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.451 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H9 O6 P' _chem_comp.formula_weight 172.074 _chem_comp.id G3P _chem_comp.mon_nstd_flag . _chem_comp.name SN-GLYCEROL-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3P sing 83 n n C1 C2 G3P sing 84 n n C2 O2 G3P sing 85 n n C2 C3 G3P sing 86 n n C3 O1P G3P sing 87 n n O1P P G3P sing 88 n n O4P P G3P sing 89 n n O2P P G3P doub 90 n n O3P P G3P sing 91 n n O1 HO1 G3P sing 92 n n C1 H11 G3P sing 93 n n C1 H12 G3P sing 94 n n C2 H2 G3P sing 95 n n O2 HO2 G3P sing 96 n n C3 H31 G3P sing 97 n n C3 H32 G3P sing 98 n n O3P HOP3 G3P sing 99 n n O4P HOP4 G3P sing 100 n n # _atom_sites.entry_id 6HUL _atom_sites.fract_transf_matrix[1][1] 0.007753 _atom_sites.fract_transf_matrix[1][2] 0.004476 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 G3P A 1 301 1 G3P G3P . D 4 SER B 1 501 501 SER SER . E 5 PLP B 1 502 108 PLP LLP . F 6 SO4 B 1 503 1 SO4 SO4 . G 6 SO4 B 1 504 2 SO4 SO4 . H 6 SO4 B 1 505 3 SO4 SO4 . I 7 PO4 B 1 506 1 PO4 PO4 . J 7 PO4 B 1 507 2 PO4 PO4 . K 7 PO4 B 1 508 3 PO4 PO4 . L 8 HOH A 1 401 2 HOH HOH . L 8 HOH A 2 402 11 HOH HOH . L 8 HOH A 3 403 27 HOH HOH . L 8 HOH A 4 404 26 HOH HOH . L 8 HOH A 5 405 25 HOH HOH . L 8 HOH A 6 406 18 HOH HOH . L 8 HOH A 7 407 19 HOH HOH . M 8 HOH B 1 601 9 HOH HOH . M 8 HOH B 2 602 35 HOH HOH . M 8 HOH B 3 603 3 HOH HOH . M 8 HOH B 4 604 39 HOH HOH . M 8 HOH B 5 605 34 HOH HOH . M 8 HOH B 6 606 1 HOH HOH . M 8 HOH B 7 607 6 HOH HOH . M 8 HOH B 8 608 4 HOH HOH . M 8 HOH B 9 609 7 HOH HOH . M 8 HOH B 10 610 36 HOH HOH . M 8 HOH B 11 611 37 HOH HOH . M 8 HOH B 12 612 40 HOH HOH . M 8 HOH B 13 613 38 HOH HOH . M 8 HOH B 14 614 21 HOH HOH . M 8 HOH B 15 615 30 HOH HOH . M 8 HOH B 16 616 5 HOH HOH . M 8 HOH B 17 617 32 HOH HOH . M 8 HOH B 18 618 28 HOH HOH . M 8 HOH B 19 619 33 HOH HOH . M 8 HOH B 20 620 10 HOH HOH . M 8 HOH B 21 621 23 HOH HOH . M 8 HOH B 22 622 13 HOH HOH . M 8 HOH B 23 623 8 HOH HOH . M 8 HOH B 24 624 12 HOH HOH . M 8 HOH B 25 625 29 HOH HOH . M 8 HOH B 26 626 14 HOH HOH . M 8 HOH B 27 627 31 HOH HOH . M 8 HOH B 28 628 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3P . . . C 3 4.554 -59.601 2.821 1 67.1 ? O1 G3P 301 A 1 HETATM 2 C C1 G3P . . . C 3 5.542 -60.002 1.902 1 69.2 ? C1 G3P 301 A 1 HETATM 3 C C2 G3P . . . C 3 6.799 -60.338 2.704 1 72.3 ? C2 G3P 301 A 1 HETATM 4 O O2 G3P . . . C 3 7.667 -61.249 2.027 1 74.32 ? O2 G3P 301 A 1 HETATM 5 C C3 G3P . . . C 3 6.38 -60.79 4.104 1 62.4 ? C3 G3P 301 A 1 HETATM 6 O O1P G3P . . . C 3 6.36 -59.698 5.016 1 57.59 ? O1P G3P 301 A 1 HETATM 7 O O4P G3P . . . C 3 7.726 -59.064 7.169 1 59.15 ? O4P G3P 301 A 1 HETATM 8 O O2P G3P . . . C 3 7.325 -61.359 6.648 1 51.4 ? O2P G3P 301 A 1 HETATM 9 O O3P G3P . . . C 3 5.4 -59.866 7.359 1 53.33 ? O3P G3P 301 A 1 HETATM 10 P P G3P . . . C 3 6.689 -59.991 6.58 1 55.61 ? P G3P 301 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #