data_6HUL
#
_model_server_result.job_id            8zco-7D9djJXPwDcWHLfmA 
_model_server_result.datetime_utc      '2024-12-21 13:48:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    6HUL 
#
_exptl.entry_id    6HUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6HUL 
_cell.length_a            128.98 
_cell.length_b            128.98 
_cell.length_c            217.37 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             108 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              108 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            C4A 
_struct_conn.ptnr2_label_comp_id            PLP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             PLP 
_struct_conn.ptnr2_auth_seq_id              502 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.451 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 278 n y 
N1 C6 PLP sing 279 n y 
C2 C2A PLP sing 280 n n 
C2 C3 PLP sing 281 n y 
C2A H2A1 PLP sing 282 n n 
C2A H2A2 PLP sing 283 n n 
C2A H2A3 PLP sing 284 n n 
C3 O3 PLP sing 285 n n 
C3 C4 PLP doub 286 n y 
O3 HO3 PLP sing 287 n n 
C4 C4A PLP sing 288 n n 
C4 C5 PLP sing 289 n y 
C4A O4A PLP doub 290 n n 
C4A H4A PLP sing 291 n n 
C5 C6 PLP doub 292 n y 
C5 C5A PLP sing 293 n n 
C6 H6 PLP sing 294 n n 
C5A O4P PLP sing 295 n n 
C5A H5A1 PLP sing 296 n n 
C5A H5A2 PLP sing 297 n n 
O4P P PLP sing 298 n n 
P O1P PLP doub 299 n n 
P O2P PLP sing 300 n n 
P O3P PLP sing 301 n n 
O2P HOP2 PLP sing 302 n n 
O3P HOP3 PLP sing 303 n n 
#
_atom_sites.entry_id                     6HUL 
_atom_sites.fract_transf_matrix[1][1]    0.007753 
_atom_sites.fract_transf_matrix[1][2]    0.004476 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 G3P A 1 301 1 G3P G3P . 
D 4 SER B 1 501 501 SER SER . 
E 5 PLP B 1 502 108 PLP LLP . 
F 6 SO4 B 1 503 1 SO4 SO4 . 
G 6 SO4 B 1 504 2 SO4 SO4 . 
H 6 SO4 B 1 505 3 SO4 SO4 . 
I 7 PO4 B 1 506 1 PO4 PO4 . 
J 7 PO4 B 1 507 2 PO4 PO4 . 
K 7 PO4 B 1 508 3 PO4 PO4 . 
L 8 HOH A 1 401 2 HOH HOH . 
L 8 HOH A 2 402 11 HOH HOH . 
L 8 HOH A 3 403 27 HOH HOH . 
L 8 HOH A 4 404 26 HOH HOH . 
L 8 HOH A 5 405 25 HOH HOH . 
L 8 HOH A 6 406 18 HOH HOH . 
L 8 HOH A 7 407 19 HOH HOH . 
M 8 HOH B 1 601 9 HOH HOH . 
M 8 HOH B 2 602 35 HOH HOH . 
M 8 HOH B 3 603 3 HOH HOH . 
M 8 HOH B 4 604 39 HOH HOH . 
M 8 HOH B 5 605 34 HOH HOH . 
M 8 HOH B 6 606 1 HOH HOH . 
M 8 HOH B 7 607 6 HOH HOH . 
M 8 HOH B 8 608 4 HOH HOH . 
M 8 HOH B 9 609 7 HOH HOH . 
M 8 HOH B 10 610 36 HOH HOH . 
M 8 HOH B 11 611 37 HOH HOH . 
M 8 HOH B 12 612 40 HOH HOH . 
M 8 HOH B 13 613 38 HOH HOH . 
M 8 HOH B 14 614 21 HOH HOH . 
M 8 HOH B 15 615 30 HOH HOH . 
M 8 HOH B 16 616 5 HOH HOH . 
M 8 HOH B 17 617 32 HOH HOH . 
M 8 HOH B 18 618 28 HOH HOH . 
M 8 HOH B 19 619 33 HOH HOH . 
M 8 HOH B 20 620 10 HOH HOH . 
M 8 HOH B 21 621 23 HOH HOH . 
M 8 HOH B 22 622 13 HOH HOH . 
M 8 HOH B 23 623 8 HOH HOH . 
M 8 HOH B 24 624 12 HOH HOH . 
M 8 HOH B 25 625 29 HOH HOH . 
M 8 HOH B 26 626 14 HOH HOH . 
M 8 HOH B 27 627 31 HOH HOH . 
M 8 HOH B 28 628 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 5 35.021 -31.143 7.203 1 49.99 ? N1 PLP 502 B 1 
HETATM 2 C C2 PLP . . . E 5 35.415 -31.361 8.451 1 50.78 ? C2 PLP 502 B 1 
HETATM 3 C C2A PLP . . . E 5 35.878 -30.146 9.312 1 36.15 ? C2A PLP 502 B 1 
HETATM 4 C C3 PLP . . . E 5 35.391 -32.691 8.98 1 62.77 ? C3 PLP 502 B 1 
HETATM 5 O O3 PLP . . . E 5 35.785 -32.934 10.308 1 67.89 ? O3 PLP 502 B 1 
HETATM 6 C C4 PLP . . . E 5 34.963 -33.751 8.201 1 62.78 ? C4 PLP 502 B 1 
HETATM 7 C C4A PLP . . . E 5 34.953 -35.245 8.851 1 69.03 ? C4A PLP 502 B 1 
HETATM 8 C C5 PLP . . . E 5 34.562 -33.509 6.915 1 51.96 ? C5 PLP 502 B 1 
HETATM 9 C C6 PLP . . . E 5 34.592 -32.208 6.412 1 48.44 ? C6 PLP 502 B 1 
HETATM 10 C C5A PLP . . . E 5 34.089 -34.624 5.927 1 51.42 ? C5A PLP 502 B 1 
HETATM 11 O O4P PLP . . . E 5 33.029 -35.376 6.436 1 52.13 ? O4P PLP 502 B 1 
HETATM 12 P P PLP . . . E 5 31.607 -34.992 6.064 1 43.91 ? P PLP 502 B 1 
HETATM 13 O O1P PLP . . . E 5 31.493 -34.707 4.628 1 45.71 ? O1P PLP 502 B 1 
HETATM 14 O O2P PLP . . . E 5 31.225 -33.743 6.851 1 50.26 ? O2P PLP 502 B 1 
HETATM 15 O O3P PLP . . . E 5 30.748 -36.117 6.477 1 48.68 ? O3P PLP 502 B 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           15 
#