data_6HUP # _model_server_result.job_id UgAVEMqVZ_SbFwxqyYUIPw _model_server_result.datetime_utc '2024-11-09 02:10:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":501}' # _entry.id 6HUP # _exptl.entry_id 6HUP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 103.12 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GAMMA-AMINO-BUTANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 O N N ? 10 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 5 6 4 MAN MAN C1 O1 . O6 HO6 . sing 6 ? 5 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 10 ? 7 4 3 MAN BMA C1 O1 . O6 HO6 . sing 11 ? 7 5 4 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 7 6 3 MAN BMA C1 O1 . O3 HO3 . sing 13 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 14 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 15 ? 8 4 3 MAN BMA C1 O1 . O3 HO3 . sing 16 ? 8 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n G NAG 1 F 1 NAG R 3000 NAG 5 n G NAG 2 F 2 NAG R 3001 NAG 5 n G BMA 3 F 3 BMA R 3002 BMA 5 n G MAN 4 F 4 MAN R 3003 MAN 5 n G MAN 5 F 5 MAN R 3006 MAN 5 n G MAN 6 F 6 MAN R 3004 MAN 5 n G MAN 7 F 7 MAN R 3008 MAN 6 n H NAG 1 H 1 NAG O 2000 NAG 6 n H NAG 2 H 2 NAG O 2001 NAG 7 n I NAG 1 I 1 NAG S 3000 NAG 7 n I NAG 2 I 2 NAG S 3001 NAG 7 n I BMA 3 I 3 BMA S 3002 BMA 7 n I MAN 4 I 4 MAN S 3003 MAN 7 n I MAN 5 I 5 MAN S 3005 MAN 7 n I MAN 6 I 6 MAN S 3004 MAN 6 n J NAG 1 J 1 NAG T 3000 NAG 6 n J NAG 2 J 2 NAG T 3001 NAG 8 n K NAG 1 K 1 NAG U 3000 NAG 8 n K NAG 2 K 2 NAG U 3001 NAG 8 n K BMA 3 K 3 BMA U 3002 BMA 8 n K MAN 4 K 4 MAN U 3008 MAN 8 n K MAN 5 K 5 MAN U 3003 MAN 6 n L NAG 1 L 1 NAG P 2000 NAG 6 n L NAG 2 L 2 NAG P 2001 NAG 7 n M NAG 1 M 1 NAG V 3000 NAG 7 n M NAG 2 M 2 NAG V 3001 NAG 7 n M BMA 3 M 3 BMA V 3002 BMA 7 n M MAN 4 M 4 MAN V 3003 MAN 7 n M MAN 5 M 5 MAN V 3005 MAN 7 n M MAN 6 M 6 MAN V 3004 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 139 1_555 A SG CYS 188 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 161 B CYS 136 1_555 B SG CYS 175 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 190 C CYS 151 1_555 C SG CYS 204 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 D SG CYS 174 D CYS 139 1_555 D SG CYS 188 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 E SG CYS 161 E CYS 136 1_555 E SG CYS 175 E CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 F SG CYS 428 G CYS 428 1_555 F SG CYS 501 G CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 146 A ASN 111 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 105 B ASN 80 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 174 B ASN 149 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 C ND2 ASN 247 C ASN 208 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 D ND2 ASN 146 D ASN 111 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 E ND2 ASN 105 E ASN 80 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 E ND2 ASN 174 E ASN 149 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale9 G O4 NAG . F NAG 2 1_555 G C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale10 G O6 BMA . F BMA 3 1_555 G C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale11 G O3 BMA . F BMA 3 1_555 G C1 MAN . F MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale12 G O3 MAN . F MAN 4 1_555 G C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale13 G O6 MAN . F MAN 4 1_555 G C1 MAN . F MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale16 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale17 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 I O3 BMA . I BMA 3 1_555 I C1 MAN . I MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale19 I O3 MAN . I MAN 4 1_555 I C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale20 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale21 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale22 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale23 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale24 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale25 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale26 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale27 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale28 M O6 BMA . M BMA 3 1_555 M C1 MAN . M MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale29 M O3 BMA . M BMA 3 1_555 M C1 MAN . M MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale30 M O3 MAN . M MAN 4 1_555 M C1 MAN . M MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? # _chem_comp.formula 'C4 H9 N O2' _chem_comp.formula_weight 103.12 _chem_comp.id ABU _chem_comp.mon_nstd_flag . _chem_comp.name 'GAMMA-AMINO-BUTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GAMMA(AMINO)-BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CD ABU sing 1 n n N H ABU sing 2 n n N H2 ABU sing 3 n n CD CB ABU sing 4 n n CD HA1 ABU sing 5 n n CD HA2 ABU sing 6 n n CB CG ABU sing 7 n n CB HB1 ABU sing 8 n n CB HB2 ABU sing 9 n n CG C ABU sing 10 n n CG HG1 ABU sing 11 n n CG HG2 ABU sing 12 n n C O ABU doub 13 n n C OXT ABU sing 14 n n OXT HXT ABU sing 15 n n # _atom_sites.entry_id 6HUP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 9 PIO A 1 501 1 PIO PIO . O 10 ABU B 1 501 1 ABU ABU . P 11 DZP B 1 502 2001 DZP DZP . Q 11 DZP D 1 2001 2001 DZP DZP . R 9 PIO D 1 2002 1 PIO PIO . S 10 ABU E 1 501 1 ABU ABU . T 11 DZP E 1 502 2001 DZP DZP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ABU . . . S 10 110.273 125.931 106.622 1 69.81 ? N ABU 501 E 1 HETATM 2 C CD ABU . . . S 10 110.681 127.331 106.539 1 69.81 ? CD ABU 501 E 1 HETATM 3 C CB ABU . . . S 10 109.491 128.261 106.479 1 69.81 ? CB ABU 501 E 1 HETATM 4 C CG ABU . . . S 10 109.879 129.728 106.394 1 69.81 ? CG ABU 501 E 1 HETATM 5 C C ABU . . . S 10 108.7 130.655 106.336 1 69.81 ? C ABU 501 E 1 HETATM 6 O O ABU . . . S 10 109.006 131.864 106.263 1 69.81 ? O ABU 501 E 1 HETATM 7 O OXT ABU . . . S 10 107.521 130.253 106.373 1 69.81 ? OXT ABU 501 E 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #