data_6HUX # _model_server_result.job_id doUJ_Wy-EM28qA5DmRfJpg _model_server_result.datetime_utc '2024-11-24 19:03:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hux # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":410}' # _entry.id 6HUX # _exptl.entry_id 6HUX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 686.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'iron-guanylyl pyridinol cofactor' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HUX _cell.length_a 124.281 _cell.length_b 124.281 _cell.length_c 150.086 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HUX _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_567 x-y+2/3,-y+4/3,-z+7/3 1 0 0 0 -1 0 0 0 -1 0 143.507338 350.200667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 86 A ASP 86 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc2 A OG1 THR 112 A THR 112 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc3 A OE1 GLU 245 A GLU 245 1_555 N MG MG . A MG 413 11_567 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 A OE1 GLU 265 A GLU 265 1_555 N MG MG . A MG 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A OE2 GLU 265 A GLU 265 1_555 N MG MG . A MG 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? # _chem_comp.formula 'C21 H23 Fe N6 O13 P S 4' _chem_comp.formula_weight 686.323 _chem_comp.id FE9 _chem_comp.mon_nstd_flag . _chem_comp.name 'iron-guanylyl pyridinol cofactor' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' FE9 sing 200 n n O6A C6A FE9 doub 201 n n C6A N1A FE9 sing 202 n n C6A C5A FE9 sing 203 n n N1A C2A FE9 sing 204 n n N7A C5A FE9 sing 205 n y N7A C8A FE9 doub 206 n y C5A C4A FE9 doub 207 n y C8A N9A FE9 sing 208 n y C2A N2A FE9 sing 209 n n C2A N3A FE9 doub 210 n n C2' C1' FE9 sing 211 n n C2' C3' FE9 sing 212 n n C4A N3A FE9 sing 213 n n C4A N9A FE9 sing 214 n y N9A C1' FE9 sing 215 n n O3' C3' FE9 sing 216 n n C1' O4' FE9 sing 217 n n C3' C4' FE9 sing 218 n n O4' C4' FE9 sing 219 n n C4' C5' FE9 sing 220 n n O1P P1 FE9 doub 221 n n C5' O5' FE9 sing 222 n n O5' P1 FE9 sing 223 n n P1 O2P FE9 sing 224 n n P1 O3P FE9 sing 225 n n O3P C4 FE9 sing 226 n n C3M C3 FE9 sing 227 n n C4 C3 FE9 doub 228 n n C4 C5 FE9 sing 229 n n C5M C5 FE9 sing 230 n n C3 C2 FE9 sing 231 n n C5 C6 FE9 doub 232 n n C2 O2 FE9 doub 233 n n C2 N1 FE9 sing 234 n n C6 N1 FE9 sing 235 n n C6 C7 FE9 sing 236 n n N1 FE FE9 sing 237 n n O1F C1F FE9 trip 238 n n C7 C8 FE9 sing 239 n n C1F FE FE9 sing 240 n n C8 FE FE9 sing 241 n n C8 O18 FE9 doub 242 n n FE C2F FE9 sing 243 n n C2F O2F FE9 trip 244 n n C7 H8 FE9 sing 245 n n C5M H9 FE9 sing 246 n n C5M H10 FE9 sing 247 n n C5M H11 FE9 sing 248 n n C3M H12 FE9 sing 249 n n C3M H13 FE9 sing 250 n n C3M H14 FE9 sing 251 n n O2P H15 FE9 sing 252 n n C5' H16 FE9 sing 253 n n C5' H17 FE9 sing 254 n n C4' H18 FE9 sing 255 n n C1' H19 FE9 sing 256 n n C2' H20 FE9 sing 257 n n O2' H21 FE9 sing 258 n n C3' H22 FE9 sing 259 n n O3' H23 FE9 sing 260 n n N2A H24 FE9 sing 261 n n N2A H25 FE9 sing 262 n n N1A H26 FE9 sing 263 n n C8A H27 FE9 sing 264 n n C7 H1 FE9 sing 265 n n FE O1 FE9 sing 266 n n FE S1 FE9 sing 267 n n S1 HS1 FE9 sing 268 n n O1 H2 FE9 sing 269 n n # _atom_sites.entry_id 6HUX _atom_sites.fract_transf_matrix[1][1] 0.008046 _atom_sites.fract_transf_matrix[1][2] 0.004646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 3 ACT ACT . C 2 ACT A 1 402 7 ACT ACT . D 2 ACT A 1 403 8 ACT ACT . E 2 ACT A 1 404 10 ACT ACT . F 2 ACT A 1 405 11 ACT ACT . G 2 ACT A 1 406 12 ACT ACT . H 2 ACT A 1 407 13 ACT ACT . I 2 ACT A 1 408 14 ACT ACT . J 2 ACT A 1 409 15 ACT ACT . K 3 FE9 A 1 410 401 FE9 FE9 . L 4 NA A 1 411 1 NA NA . M 5 E4M A 1 412 1 E4M E4M . N 6 MG A 1 413 1 MG MG . O 7 SO4 A 1 414 1 SO4 SO4 . P 7 SO4 A 1 415 2 SO4 SO4 . Q 7 SO4 A 1 416 3 SO4 SO4 . R 7 SO4 A 1 417 4 SO4 SO4 . S 7 SO4 A 1 418 5 SO4 SO4 . T 7 SO4 A 1 419 7 SO4 SO4 . U 7 SO4 A 1 420 8 SO4 SO4 . V 8 EDO A 1 421 1 EDO EDO . W 8 EDO A 1 422 2 EDO EDO . X 8 EDO A 1 423 3 EDO EDO . Y 9 CL A 1 424 1 CL CL . Z 10 HOH A 1 501 38 HOH HOH . Z 10 HOH A 2 502 36 HOH HOH . Z 10 HOH A 3 503 7 HOH HOH . Z 10 HOH A 4 504 17 HOH HOH . Z 10 HOH A 5 505 22 HOH HOH . Z 10 HOH A 6 506 58 HOH HOH . Z 10 HOH A 7 507 41 HOH HOH . Z 10 HOH A 8 508 4 HOH HOH . Z 10 HOH A 9 509 29 HOH HOH . Z 10 HOH A 10 510 64 HOH HOH . Z 10 HOH A 11 511 12 HOH HOH . Z 10 HOH A 12 512 63 HOH HOH . Z 10 HOH A 13 513 45 HOH HOH . Z 10 HOH A 14 514 27 HOH HOH . Z 10 HOH A 15 515 51 HOH HOH . Z 10 HOH A 16 516 42 HOH HOH . Z 10 HOH A 17 517 32 HOH HOH . Z 10 HOH A 18 518 43 HOH HOH . Z 10 HOH A 19 519 47 HOH HOH . Z 10 HOH A 20 520 19 HOH HOH . Z 10 HOH A 21 521 24 HOH HOH . Z 10 HOH A 22 522 5 HOH HOH . Z 10 HOH A 23 523 26 HOH HOH . Z 10 HOH A 24 524 21 HOH HOH . Z 10 HOH A 25 525 20 HOH HOH . Z 10 HOH A 26 526 60 HOH HOH . Z 10 HOH A 27 527 52 HOH HOH . Z 10 HOH A 28 528 54 HOH HOH . Z 10 HOH A 29 529 16 HOH HOH . Z 10 HOH A 30 530 62 HOH HOH . Z 10 HOH A 31 531 31 HOH HOH . Z 10 HOH A 32 532 30 HOH HOH . Z 10 HOH A 33 533 39 HOH HOH . Z 10 HOH A 34 534 37 HOH HOH . Z 10 HOH A 35 535 1 HOH HOH . Z 10 HOH A 36 536 46 HOH HOH . Z 10 HOH A 37 537 49 HOH HOH . Z 10 HOH A 38 538 11 HOH HOH . Z 10 HOH A 39 539 55 HOH HOH . Z 10 HOH A 40 540 56 HOH HOH . Z 10 HOH A 41 541 10 HOH HOH . Z 10 HOH A 42 542 44 HOH HOH . Z 10 HOH A 43 543 50 HOH HOH . Z 10 HOH A 44 544 40 HOH HOH . Z 10 HOH A 45 545 59 HOH HOH . Z 10 HOH A 46 546 65 HOH HOH . Z 10 HOH A 47 547 8 HOH HOH . Z 10 HOH A 48 548 61 HOH HOH . Z 10 HOH A 49 549 53 HOH HOH . Z 10 HOH A 50 550 13 HOH HOH . Z 10 HOH A 51 551 3 HOH HOH . Z 10 HOH A 52 552 23 HOH HOH . Z 10 HOH A 53 553 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 FE9 . . . K 3 -32.476 90.689 188.196 1 81.38 ? O2 FE9 410 A 1 HETATM 2 FE FE FE9 . . . K 3 -32.806 91.663 185.094 1 98.23 2 FE FE9 410 A 1 HETATM 3 C C1F FE9 . . . K 3 -31.375 92.781 185.359 1 94.21 ? C1F FE9 410 A 1 HETATM 4 O O1F FE9 . . . K 3 -30.481 93.46 185.511 1 88.19 ? O1F FE9 410 A 1 HETATM 5 C C2F FE9 . . . K 3 -32.071 91.339 183.453 1 93.91 ? C2F FE9 410 A 1 HETATM 6 O O2F FE9 . . . K 3 -31.62 91.17 182.433 1 91.56 ? O2F FE9 410 A 1 HETATM 7 C C8 FE9 . . . K 3 -33.896 93.042 184.36 1 85.1 ? C8 FE9 410 A 1 HETATM 8 O O18 FE9 . . . K 3 -33.832 93.351 183.183 1 73.73 ? O18 FE9 410 A 1 HETATM 9 C C7 FE9 . . . K 3 -34.869 93.714 185.307 1 90.02 ? C7 FE9 410 A 1 HETATM 10 C C6 FE9 . . . K 3 -34.568 93.215 186.702 1 91.75 ? C6 FE9 410 A 1 HETATM 11 N N1 FE9 . . . K 3 -33.614 92.172 186.807 1 93.4 ? N1 FE9 410 A 1 HETATM 12 C C5 FE9 . . . K 3 -35.279 93.766 187.889 1 90.21 ? C5 FE9 410 A 1 HETATM 13 C C5M FE9 . . . K 3 -36.324 94.83 187.694 1 90.84 ? C5M FE9 410 A 1 HETATM 14 C C4 FE9 . . . K 3 -34.989 93.194 189.234 1 90.07 ? C4 FE9 410 A 1 HETATM 15 C C3 FE9 . . . K 3 -33.98 92.091 189.315 1 86.63 ? C3 FE9 410 A 1 HETATM 16 C C3M FE9 . . . K 3 -33.612 91.488 190.648 1 86.25 ? C3M FE9 410 A 1 HETATM 17 C C2 FE9 . . . K 3 -33.305 91.607 188.08 1 84.75 ? C2 FE9 410 A 1 HETATM 18 O O3P FE9 . . . K 3 -35.596 93.698 190.371 1 91.5 ? O3P FE9 410 A 1 HETATM 19 P P1 FE9 . . . K 3 -34.834 94.787 191.323 1 89.5 ? P1 FE9 410 A 1 HETATM 20 O O1P FE9 . . . K 3 -33.366 94.802 191.062 1 83.67 ? O1P FE9 410 A 1 HETATM 21 O O2P FE9 . . . K 3 -35.098 94.439 192.881 1 86.39 -1 O2P FE9 410 A 1 HETATM 22 O O5' FE9 . . . K 3 -35.393 96.267 190.99 1 95.47 ? O5' FE9 410 A 1 HETATM 23 C C5' FE9 . . . K 3 -36.751 96.628 191.237 1 98.5 ? C5' FE9 410 A 1 HETATM 24 C C4' FE9 . . . K 3 -36.785 98.004 191.886 1 97.76 ? C4' FE9 410 A 1 HETATM 25 O O4' FE9 . . . K 3 -38.104 98.56 191.938 1 95.91 ? O4' FE9 410 A 1 HETATM 26 C C1' FE9 . . . K 3 -38.299 99.128 193.233 1 93.79 ? C1' FE9 410 A 1 HETATM 27 C C2' FE9 . . . K 3 -37.498 98.272 194.191 1 96.13 ? C2' FE9 410 A 1 HETATM 28 O O2' FE9 . . . K 3 -37.203 98.923 195.435 1 94.72 ? O2' FE9 410 A 1 HETATM 29 C C3' FE9 . . . K 3 -36.297 97.919 193.327 1 100.09 ? C3' FE9 410 A 1 HETATM 30 O O3' FE9 . . . K 3 -35.217 98.841 193.464 1 100.89 ? O3' FE9 410 A 1 HETATM 31 N N9A FE9 . . . K 3 -39.723 99.253 193.616 1 91.74 ? N9A FE9 410 A 1 HETATM 32 C C4A FE9 . . . K 3 -40.509 100.165 193.071 1 89.53 ? C4A FE9 410 A 1 HETATM 33 N N3A FE9 . . . K 3 -40.337 101.078 192.082 1 85.75 ? N3A FE9 410 A 1 HETATM 34 C C2A FE9 . . . K 3 -41.356 101.908 191.733 1 84.18 ? C2A FE9 410 A 1 HETATM 35 N N2A FE9 . . . K 3 -41.119 102.8 190.738 1 77.58 ? N2A FE9 410 A 1 HETATM 36 N N1A FE9 . . . K 3 -42.572 101.868 192.349 1 88.23 ? N1A FE9 410 A 1 HETATM 37 C C6A FE9 . . . K 3 -42.867 101.014 193.356 1 90.94 ? C6A FE9 410 A 1 HETATM 38 O O6A FE9 . . . K 3 -44.008 100.971 193.888 1 88.03 ? O6A FE9 410 A 1 HETATM 39 C C5A FE9 . . . K 3 -41.8 100.063 193.774 1 92.49 ? C5A FE9 410 A 1 HETATM 40 N N7A FE9 . . . K 3 -41.669 99.079 194.685 1 91.3 ? N7A FE9 410 A 1 HETATM 41 C C8A FE9 . . . K 3 -40.392 98.63 194.614 1 91.91 ? C8A FE9 410 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 510 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 41 #