data_6HUZ # _model_server_result.job_id R3L6LQScJU9hVHBX6he6BA _model_server_result.datetime_utc '2024-11-24 16:50:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6huz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 6HUZ # _exptl.entry_id 6HUZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HUZ _cell.length_a 65.2 _cell.length_b 132.02 _cell.length_c 49.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HUZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -65.2 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 117 A CYS 117 1_555 B FE FE9 . A FE9 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A OE1 GLU 236 A GLU 236 1_555 I NA NA . A NA 408 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc3 A OE2 GLU 236 A GLU 236 1_555 I NA NA . A NA 408 2_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc4 A O GLN 238 A GLN 238 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc5 A OE1 GLN 238 A GLN 238 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc6 A OG SER 242 A SER 242 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc7 A OE1 GLU 256 A GLU 256 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc8 A O LYS 356 A LYS 356 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc9 B FE FE9 . A FE9 401 1_555 J O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc10 I NA NA . A NA 408 1_555 J O HOH . A HOH 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HUZ _atom_sites.fract_transf_matrix[1][1] 0.015337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE9 A 1 401 402 FE9 FE9 . C 3 GUE A 1 402 1 GUE CH1 . D 4 GOL A 1 403 2 GOL GOL . E 4 GOL A 1 404 3 GOL GOL . F 5 EDO A 1 405 1 EDO EDO . G 6 NA A 1 406 1 NA NA . H 6 NA A 1 407 2 NA NA . I 6 NA A 1 408 3 NA NA . J 7 HOH A 1 501 91 HOH HOH . J 7 HOH A 2 502 92 HOH HOH . J 7 HOH A 3 503 154 HOH HOH . J 7 HOH A 4 504 58 HOH HOH . J 7 HOH A 5 505 305 HOH HOH . J 7 HOH A 6 506 16 HOH HOH . J 7 HOH A 7 507 148 HOH HOH . J 7 HOH A 8 508 65 HOH HOH . J 7 HOH A 9 509 1 HOH HOH . J 7 HOH A 10 510 83 HOH HOH . J 7 HOH A 11 511 59 HOH HOH . J 7 HOH A 12 512 17 HOH HOH . J 7 HOH A 13 513 254 HOH HOH . J 7 HOH A 14 514 153 HOH HOH . J 7 HOH A 15 515 27 HOH HOH . J 7 HOH A 16 516 237 HOH HOH . J 7 HOH A 17 517 5 HOH HOH . J 7 HOH A 18 518 39 HOH HOH . J 7 HOH A 19 519 6 HOH HOH . J 7 HOH A 20 520 90 HOH HOH . J 7 HOH A 21 521 25 HOH HOH . J 7 HOH A 22 522 132 HOH HOH . J 7 HOH A 23 523 7 HOH HOH . J 7 HOH A 24 524 52 HOH HOH . J 7 HOH A 25 525 30 HOH HOH . J 7 HOH A 26 526 219 HOH HOH . J 7 HOH A 27 527 12 HOH HOH . J 7 HOH A 28 528 61 HOH HOH . J 7 HOH A 29 529 32 HOH HOH . J 7 HOH A 30 530 259 HOH HOH . J 7 HOH A 31 531 119 HOH HOH . J 7 HOH A 32 532 38 HOH HOH . J 7 HOH A 33 533 234 HOH HOH . J 7 HOH A 34 534 168 HOH HOH . J 7 HOH A 35 535 248 HOH HOH . J 7 HOH A 36 536 18 HOH HOH . J 7 HOH A 37 537 301 HOH HOH . J 7 HOH A 38 538 99 HOH HOH . J 7 HOH A 39 539 150 HOH HOH . J 7 HOH A 40 540 238 HOH HOH . J 7 HOH A 41 541 13 HOH HOH . J 7 HOH A 42 542 149 HOH HOH . J 7 HOH A 43 543 235 HOH HOH . J 7 HOH A 44 544 28 HOH HOH . J 7 HOH A 45 545 4 HOH HOH . J 7 HOH A 46 546 68 HOH HOH . J 7 HOH A 47 547 56 HOH HOH . J 7 HOH A 48 548 66 HOH HOH . J 7 HOH A 49 549 97 HOH HOH . J 7 HOH A 50 550 152 HOH HOH . J 7 HOH A 51 551 71 HOH HOH . J 7 HOH A 52 552 242 HOH HOH . J 7 HOH A 53 553 217 HOH HOH . J 7 HOH A 54 554 276 HOH HOH . J 7 HOH A 55 555 103 HOH HOH . J 7 HOH A 56 556 304 HOH HOH . J 7 HOH A 57 557 10 HOH HOH . J 7 HOH A 58 558 293 HOH HOH . J 7 HOH A 59 559 288 HOH HOH . J 7 HOH A 60 560 46 HOH HOH . J 7 HOH A 61 561 100 HOH HOH . J 7 HOH A 62 562 312 HOH HOH . J 7 HOH A 63 563 320 HOH HOH . J 7 HOH A 64 564 8 HOH HOH . J 7 HOH A 65 565 81 HOH HOH . J 7 HOH A 66 566 284 HOH HOH . J 7 HOH A 67 567 243 HOH HOH . J 7 HOH A 68 568 42 HOH HOH . J 7 HOH A 69 569 180 HOH HOH . J 7 HOH A 70 570 250 HOH HOH . J 7 HOH A 71 571 193 HOH HOH . J 7 HOH A 72 572 140 HOH HOH . J 7 HOH A 73 573 44 HOH HOH . J 7 HOH A 74 574 144 HOH HOH . J 7 HOH A 75 575 186 HOH HOH . J 7 HOH A 76 576 98 HOH HOH . J 7 HOH A 77 577 87 HOH HOH . J 7 HOH A 78 578 11 HOH HOH . J 7 HOH A 79 579 241 HOH HOH . J 7 HOH A 80 580 35 HOH HOH . J 7 HOH A 81 581 93 HOH HOH . J 7 HOH A 82 582 198 HOH HOH . J 7 HOH A 83 583 24 HOH HOH . J 7 HOH A 84 584 21 HOH HOH . J 7 HOH A 85 585 166 HOH HOH . J 7 HOH A 86 586 268 HOH HOH . J 7 HOH A 87 587 211 HOH HOH . J 7 HOH A 88 588 273 HOH HOH . J 7 HOH A 89 589 33 HOH HOH . J 7 HOH A 90 590 63 HOH HOH . J 7 HOH A 91 591 26 HOH HOH . J 7 HOH A 92 592 109 HOH HOH . J 7 HOH A 93 593 216 HOH HOH . J 7 HOH A 94 594 314 HOH HOH . J 7 HOH A 95 595 49 HOH HOH . J 7 HOH A 96 596 321 HOH HOH . J 7 HOH A 97 597 174 HOH HOH . J 7 HOH A 98 598 9 HOH HOH . J 7 HOH A 99 599 40 HOH HOH . J 7 HOH A 100 600 143 HOH HOH . J 7 HOH A 101 601 129 HOH HOH . J 7 HOH A 102 602 256 HOH HOH . J 7 HOH A 103 603 183 HOH HOH . J 7 HOH A 104 604 76 HOH HOH . J 7 HOH A 105 605 29 HOH HOH . J 7 HOH A 106 606 36 HOH HOH . J 7 HOH A 107 607 74 HOH HOH . J 7 HOH A 108 608 156 HOH HOH . J 7 HOH A 109 609 227 HOH HOH . J 7 HOH A 110 610 130 HOH HOH . J 7 HOH A 111 611 3 HOH HOH . J 7 HOH A 112 612 20 HOH HOH . J 7 HOH A 113 613 78 HOH HOH . J 7 HOH A 114 614 179 HOH HOH . J 7 HOH A 115 615 313 HOH HOH . J 7 HOH A 116 616 120 HOH HOH . J 7 HOH A 117 617 205 HOH HOH . J 7 HOH A 118 618 159 HOH HOH . J 7 HOH A 119 619 247 HOH HOH . J 7 HOH A 120 620 48 HOH HOH . J 7 HOH A 121 621 264 HOH HOH . J 7 HOH A 122 622 145 HOH HOH . J 7 HOH A 123 623 125 HOH HOH . J 7 HOH A 124 624 19 HOH HOH . J 7 HOH A 125 625 54 HOH HOH . J 7 HOH A 126 626 155 HOH HOH . J 7 HOH A 127 627 96 HOH HOH . J 7 HOH A 128 628 181 HOH HOH . J 7 HOH A 129 629 133 HOH HOH . J 7 HOH A 130 630 169 HOH HOH . J 7 HOH A 131 631 263 HOH HOH . J 7 HOH A 132 632 298 HOH HOH . J 7 HOH A 133 633 315 HOH HOH . J 7 HOH A 134 634 86 HOH HOH . J 7 HOH A 135 635 167 HOH HOH . J 7 HOH A 136 636 15 HOH HOH . J 7 HOH A 137 637 60 HOH HOH . J 7 HOH A 138 638 50 HOH HOH . J 7 HOH A 139 639 64 HOH HOH . J 7 HOH A 140 640 249 HOH HOH . J 7 HOH A 141 641 51 HOH HOH . J 7 HOH A 142 642 190 HOH HOH . J 7 HOH A 143 643 110 HOH HOH . J 7 HOH A 144 644 43 HOH HOH . J 7 HOH A 145 645 138 HOH HOH . J 7 HOH A 146 646 123 HOH HOH . J 7 HOH A 147 647 57 HOH HOH . J 7 HOH A 148 648 308 HOH HOH . J 7 HOH A 149 649 108 HOH HOH . J 7 HOH A 150 650 23 HOH HOH . J 7 HOH A 151 651 77 HOH HOH . J 7 HOH A 152 652 316 HOH HOH . J 7 HOH A 153 653 210 HOH HOH . J 7 HOH A 154 654 192 HOH HOH . J 7 HOH A 155 655 47 HOH HOH . J 7 HOH A 156 656 85 HOH HOH . J 7 HOH A 157 657 177 HOH HOH . J 7 HOH A 158 658 112 HOH HOH . J 7 HOH A 159 659 245 HOH HOH . J 7 HOH A 160 660 22 HOH HOH . J 7 HOH A 161 661 139 HOH HOH . J 7 HOH A 162 662 244 HOH HOH . J 7 HOH A 163 663 296 HOH HOH . J 7 HOH A 164 664 295 HOH HOH . J 7 HOH A 165 665 146 HOH HOH . J 7 HOH A 166 666 269 HOH HOH . J 7 HOH A 167 667 225 HOH HOH . J 7 HOH A 168 668 325 HOH HOH . J 7 HOH A 169 669 121 HOH HOH . J 7 HOH A 170 670 88 HOH HOH . J 7 HOH A 171 671 204 HOH HOH . J 7 HOH A 172 672 89 HOH HOH . J 7 HOH A 173 673 102 HOH HOH . J 7 HOH A 174 674 282 HOH HOH . J 7 HOH A 175 675 222 HOH HOH . J 7 HOH A 176 676 116 HOH HOH . J 7 HOH A 177 677 84 HOH HOH . J 7 HOH A 178 678 178 HOH HOH . J 7 HOH A 179 679 231 HOH HOH . J 7 HOH A 180 680 165 HOH HOH . J 7 HOH A 181 681 309 HOH HOH . J 7 HOH A 182 682 188 HOH HOH . J 7 HOH A 183 683 297 HOH HOH . J 7 HOH A 184 684 203 HOH HOH . J 7 HOH A 185 685 95 HOH HOH . J 7 HOH A 186 686 197 HOH HOH . J 7 HOH A 187 687 224 HOH HOH . J 7 HOH A 188 688 163 HOH HOH . J 7 HOH A 189 689 79 HOH HOH . J 7 HOH A 190 690 195 HOH HOH . J 7 HOH A 191 691 246 HOH HOH . J 7 HOH A 192 692 31 HOH HOH . J 7 HOH A 193 693 257 HOH HOH . J 7 HOH A 194 694 202 HOH HOH . J 7 HOH A 195 695 106 HOH HOH . J 7 HOH A 196 696 261 HOH HOH . J 7 HOH A 197 697 265 HOH HOH . J 7 HOH A 198 698 73 HOH HOH . J 7 HOH A 199 699 101 HOH HOH . J 7 HOH A 200 700 185 HOH HOH . J 7 HOH A 201 701 134 HOH HOH . J 7 HOH A 202 702 307 HOH HOH . J 7 HOH A 203 703 161 HOH HOH . J 7 HOH A 204 704 214 HOH HOH . J 7 HOH A 205 705 323 HOH HOH . J 7 HOH A 206 706 104 HOH HOH . J 7 HOH A 207 707 292 HOH HOH . J 7 HOH A 208 708 270 HOH HOH . J 7 HOH A 209 709 319 HOH HOH . J 7 HOH A 210 710 206 HOH HOH . J 7 HOH A 211 711 324 HOH HOH . J 7 HOH A 212 712 233 HOH HOH . J 7 HOH A 213 713 300 HOH HOH . J 7 HOH A 214 714 285 HOH HOH . J 7 HOH A 215 715 258 HOH HOH . J 7 HOH A 216 716 131 HOH HOH . J 7 HOH A 217 717 317 HOH HOH . J 7 HOH A 218 718 199 HOH HOH . J 7 HOH A 219 719 299 HOH HOH . J 7 HOH A 220 720 286 HOH HOH . J 7 HOH A 221 721 228 HOH HOH . J 7 HOH A 222 722 327 HOH HOH . J 7 HOH A 223 723 251 HOH HOH . J 7 HOH A 224 724 306 HOH HOH . J 7 HOH A 225 725 318 HOH HOH . J 7 HOH A 226 726 328 HOH HOH . J 7 HOH A 227 727 136 HOH HOH . J 7 HOH A 228 728 164 HOH HOH . J 7 HOH A 229 729 311 HOH HOH . J 7 HOH A 230 730 279 HOH HOH . J 7 HOH A 231 731 135 HOH HOH . J 7 HOH A 232 732 151 HOH HOH . J 7 HOH A 233 733 326 HOH HOH . J 7 HOH A 234 734 170 HOH HOH . J 7 HOH A 235 735 189 HOH HOH . J 7 HOH A 236 736 229 HOH HOH . J 7 HOH A 237 737 41 HOH HOH . J 7 HOH A 238 738 158 HOH HOH . J 7 HOH A 239 739 277 HOH HOH . J 7 HOH A 240 740 310 HOH HOH . J 7 HOH A 241 741 191 HOH HOH . J 7 HOH A 242 742 137 HOH HOH . J 7 HOH A 243 743 255 HOH HOH . J 7 HOH A 244 744 287 HOH HOH . J 7 HOH A 245 745 236 HOH HOH . J 7 HOH A 246 746 162 HOH HOH . J 7 HOH A 247 747 67 HOH HOH . J 7 HOH A 248 748 290 HOH HOH . J 7 HOH A 249 749 208 HOH HOH . J 7 HOH A 250 750 124 HOH HOH . J 7 HOH A 251 751 80 HOH HOH . J 7 HOH A 252 752 252 HOH HOH . J 7 HOH A 253 753 172 HOH HOH . J 7 HOH A 254 754 302 HOH HOH . J 7 HOH A 255 755 230 HOH HOH . J 7 HOH A 256 756 221 HOH HOH . J 7 HOH A 257 757 260 HOH HOH . J 7 HOH A 258 758 267 HOH HOH . J 7 HOH A 259 759 303 HOH HOH . J 7 HOH A 260 760 196 HOH HOH . J 7 HOH A 261 761 187 HOH HOH . J 7 HOH A 262 762 107 HOH HOH . J 7 HOH A 263 763 141 HOH HOH . J 7 HOH A 264 764 126 HOH HOH . J 7 HOH A 265 765 142 HOH HOH . J 7 HOH A 266 766 213 HOH HOH . J 7 HOH A 267 767 280 HOH HOH . J 7 HOH A 268 768 194 HOH HOH . J 7 HOH A 269 769 289 HOH HOH . J 7 HOH A 270 770 114 HOH HOH . J 7 HOH A 271 771 266 HOH HOH . J 7 HOH A 272 772 115 HOH HOH . J 7 HOH A 273 773 62 HOH HOH . J 7 HOH A 274 774 322 HOH HOH . J 7 HOH A 275 775 262 HOH HOH . J 7 HOH A 276 776 53 HOH HOH . J 7 HOH A 277 777 226 HOH HOH . J 7 HOH A 278 778 283 HOH HOH . J 7 HOH A 279 779 171 HOH HOH . J 7 HOH A 280 780 128 HOH HOH . J 7 HOH A 281 781 281 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -31.578 _atom_site.Cartn_y -10.071 _atom_site.Cartn_z 14.999 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.48 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 407 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 428 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #