data_6HV7
#
_model_server_result.job_id            qexa8xBFtG1S-AWf0KsbVw 
_model_server_result.datetime_utc      '2024-11-22 20:40:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hv7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":301}' 
#
_entry.id    6HV7 
#
_exptl.entry_id    6HV7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              588.762 
_entity.id                          17 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]pyrazine-2-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.56 
_cell.angle_gamma         90 
_cell.entry_id            6HV7 
_cell.length_a            134.07 
_cell.length_b            302.11 
_cell.length_c            143.22 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HV7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 17 EA N N 
? 17 GA N N 
? 17 KA N N 
? 17 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 H OG1 THR 1 H THR 1 1_555 EA C25 GQQ . H GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 K OG1 THR 1 K THR 1 1_555 GA C25 GQQ . K GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale3 V OG1 THR 1 V THR 1 1_555 KA C25 GQQ . V GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale4 Y OG1 THR 1 Y THR 1 1_555 NA C25 GQQ . Y GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc2 G O ALA 132 G ALA 123 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? 
metalc ? metalc3 G O MET 134 G MET 125 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc4 I O SER 181 I SER 180 1_555 FA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc5 I OXT ASP 205 I ASP 204 1_555 FA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc6 K O ASP 168 K ASP 168 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc7 HA MG MG . K MG 302 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
metalc ? metalc8 L OXT ASP 222 L ASP 222 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc9 N O ILE 163 N ILE 163 1_555 IA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc10 V O ILE 163 V ILE 163 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc11 V O ASP 166 V ASP 166 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc12 V O SER 169 V SER 169 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc13 W O SER 181 W SER 180 1_555 MA MG MG . W MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc14 W OXT ASP 205 W ASP 204 1_555 MA MG MG . W MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc15 Y O HIS 166 Y HIS 166 1_555 OA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc16 Y O ASP 168 Y ASP 168 1_555 OA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc17 Z O THR 192 Z THR 192 1_555 PA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc18 Z O VAL 198 Z VAL 198 1_555 PA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
#
_chem_comp.formula           'C29 H44 N6 O5 S' 
_chem_comp.formula_weight    588.762 
_chem_comp.id                GQQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]pyrazine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C3 GQQ doub 129 n y 
N2 C1 GQQ sing 130 n y 
C3 C4 GQQ sing 131 n y 
C1 C6 GQQ doub 132 n y 
C4 N6 GQQ doub 133 n y 
C6 N6 GQQ sing 134 n y 
C6 C7 GQQ sing 135 n n 
C7 O44 GQQ doub 136 n n 
C7 N8 GQQ sing 137 n n 
C43 C41 GQQ sing 138 n n 
N8 C9 GQQ sing 139 n n 
C42 C41 GQQ sing 140 n n 
C40 C41 GQQ sing 141 n n 
C40 C9 GQQ sing 142 n n 
C9 C10 GQQ sing 143 n n 
C10 O39 GQQ doub 144 n n 
C10 N11 GQQ sing 145 n n 
N11 C12 GQQ sing 146 n n 
C33 C34 GQQ sing 147 n n 
C33 C38 GQQ sing 148 n n 
C33 C32 GQQ sing 149 n n 
C12 C32 GQQ sing 150 n n 
C12 C13 GQQ sing 151 n n 
O31 C13 GQQ doub 152 n n 
C13 N14 GQQ sing 153 n n 
C21 N22 GQQ sing 154 n n 
C21 C20 GQQ sing 155 n n 
C23 C24 GQQ doub 156 n y 
C23 C20 GQQ sing 157 n y 
C24 C17 GQQ sing 158 n y 
N14 C15 GQQ sing 159 n n 
C20 C19 GQQ doub 160 n y 
C15 C25 GQQ sing 161 n n 
C15 C16 GQQ sing 162 n n 
C28 S27 GQQ sing 163 n n 
C17 C18 GQQ doub 164 n y 
C17 C16 GQQ sing 165 n n 
C19 C18 GQQ sing 166 n y 
C25 C26 GQQ sing 167 n n 
C26 S27 GQQ sing 168 n n 
S27 O29 GQQ doub 169 n n 
S27 O30 GQQ doub 170 n n 
C4 H1 GQQ sing 171 n n 
C15 H2 GQQ sing 172 n n 
C21 H3 GQQ sing 173 n n 
C21 H4 GQQ sing 174 n n 
C24 H5 GQQ sing 175 n n 
C26 H6 GQQ sing 176 n n 
C26 H7 GQQ sing 177 n n 
C28 H8 GQQ sing 178 n n 
C28 H9 GQQ sing 179 n n 
C28 H10 GQQ sing 180 n n 
C18 H11 GQQ sing 181 n n 
C19 H12 GQQ sing 182 n n 
N22 H13 GQQ sing 183 n n 
N22 H14 GQQ sing 184 n n 
C23 H16 GQQ sing 185 n n 
C16 H17 GQQ sing 186 n n 
C16 H18 GQQ sing 187 n n 
C25 H19 GQQ sing 188 n n 
C25 H20 GQQ sing 189 n n 
N14 H21 GQQ sing 190 n n 
C12 H22 GQQ sing 191 n n 
C32 H23 GQQ sing 192 n n 
C32 H24 GQQ sing 193 n n 
C33 H25 GQQ sing 194 n n 
C38 H26 GQQ sing 195 n n 
C38 H27 GQQ sing 196 n n 
C38 H28 GQQ sing 197 n n 
C34 H29 GQQ sing 198 n n 
C34 H30 GQQ sing 199 n n 
C34 H31 GQQ sing 200 n n 
N11 H32 GQQ sing 201 n n 
C9 H33 GQQ sing 202 n n 
C40 H34 GQQ sing 203 n n 
C40 H35 GQQ sing 204 n n 
C41 H36 GQQ sing 205 n n 
C43 H37 GQQ sing 206 n n 
C43 H38 GQQ sing 207 n n 
C43 H39 GQQ sing 208 n n 
C42 H40 GQQ sing 209 n n 
C42 H41 GQQ sing 210 n n 
C42 H42 GQQ sing 211 n n 
N8 H43 GQQ sing 212 n n 
C3 H44 GQQ sing 213 n n 
C1 H45 GQQ sing 214 n n 
#
_atom_sites.entry_id                     6HV7 
_atom_sites.fract_transf_matrix[1][1]    0.007459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003099 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 15 MG G 1 301 6 MG MG . 
DA 16 CL G 1 302 9 CL CL . 
EA 17 GQQ H 1 301 0 GQQ LIG . 
FA 15 MG I 1 301 7 MG MG . 
GA 17 GQQ K 1 301 0 GQQ LIG . 
HA 15 MG K 1 302 1 MG MG . 
IA 15 MG N 1 201 5 MG MG . 
JA 16 CL U 1 301 10 CL CL . 
KA 17 GQQ V 1 301 0 GQQ LIG . 
LA 15 MG V 1 302 2 MG MG . 
MA 15 MG W 1 301 8 MG MG . 
NA 17 GQQ Y 1 301 0 GQQ LIG . 
OA 15 MG Y 1 302 4 MG MG . 
PA 15 MG Z 1 301 3 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 GQQ . . . EA 17 56.752 -134.637 32.162 1 97.37 ? C4 GQQ 301 H 1 
HETATM 2 C C6 GQQ . . . EA 17 58.232 -136.035 33.361 1 111.73 ? C6 GQQ 301 H 1 
HETATM 3 C C7 GQQ . . . EA 17 59.372 -136.121 34.155 1 106.49 ? C7 GQQ 301 H 1 
HETATM 4 C C10 GQQ . . . EA 17 60.923 -134.955 36.495 1 96.77 ? C10 GQQ 301 H 1 
HETATM 5 C C13 GQQ . . . EA 17 62.43 -136.34 39.449 1 104.65 ? C13 GQQ 301 H 1 
HETATM 6 C C15 GQQ . . . EA 17 63.315 -135.884 41.698 1 109.17 ? C15 GQQ 301 H 1 
HETATM 7 C C17 GQQ . . . EA 17 63.85 -133.486 41.938 1 107.28 ? C17 GQQ 301 H 1 
HETATM 8 C C20 GQQ . . . EA 17 65.001 -131.14 40.813 1 110.6 ? C20 GQQ 301 H 1 
HETATM 9 C C21 GQQ . . . EA 17 65.612 -130.033 40.203 1 112.24 ? C21 GQQ 301 H 1 
HETATM 10 C C24 GQQ . . . EA 17 64.636 -133.528 40.771 1 115.54 ? C24 GQQ 301 H 1 
HETATM 11 C C26 GQQ . . . EA 17 61.642 -137.347 42.933 1 92.58 ? C26 GQQ 301 H 1 
HETATM 12 C C28 GQQ . . . EA 17 61.239 -140.154 41.959 1 109.32 ? C28 GQQ 301 H 1 
HETATM 13 C C18 GQQ . . . EA 17 63.66 -132.234 42.528 1 107.22 ? C18 GQQ 301 H 1 
HETATM 14 C C19 GQQ . . . EA 17 64.227 -131.08 41.983 1 111.69 ? C19 GQQ 301 H 1 
HETATM 15 N N22 GQQ . . . EA 17 64.856 -128.771 40.302 1 92.34 ? N22 GQQ 301 H 1 
HETATM 16 C C23 GQQ . . . EA 17 65.199 -132.379 40.224 1 112.55 ? C23 GQQ 301 H 1 
HETATM 17 C C16 GQQ . . . EA 17 63.245 -134.575 42.56 1 100.57 ? C16 GQQ 301 H 1 
HETATM 18 C C25 GQQ . . . EA 17 63.122 -137.19 42.502 1 107.59 ? C25 GQQ 301 H 1 
HETATM 19 S S27 GQQ . . . EA 17 61.04 -139.029 43.332 1 106.08 ? S27 GQQ 301 H 1 
HETATM 20 O O29 GQQ . . . EA 17 59.584 -138.972 43.749 1 93.74 ? O29 GQQ 301 H 1 
HETATM 21 O O30 GQQ . . . EA 17 61.768 -139.554 44.55 1 121.56 ? O30 GQQ 301 H 1 
HETATM 22 N N14 GQQ . . . EA 17 62.285 -135.805 40.657 1 104 ? N14 GQQ 301 H 1 
HETATM 23 O O31 GQQ . . . EA 17 63.393 -137.001 39.068 1 103.34 ? O31 GQQ 301 H 1 
HETATM 24 C C12 GQQ . . . EA 17 61.187 -136.2 38.611 1 101.75 ? C12 GQQ 301 H 1 
HETATM 25 C C32 GQQ . . . EA 17 60.499 -137.557 38.827 1 98.53 ? C32 GQQ 301 H 1 
HETATM 26 C C33 GQQ . . . EA 17 59.172 -137.676 38.071 1 93.49 ? C33 GQQ 301 H 1 
HETATM 27 C C38 GQQ . . . EA 17 58.601 -139.091 38.256 1 66.93 ? C38 GQQ 301 H 1 
HETATM 28 C C34 GQQ . . . EA 17 58.2 -136.606 38.582 1 87.08 ? C34 GQQ 301 H 1 
HETATM 29 N N11 GQQ . . . EA 17 61.484 -135.962 37.191 1 95.96 ? N11 GQQ 301 H 1 
HETATM 30 O O39 GQQ . . . EA 17 60.142 -134.12 36.947 1 95.76 ? O39 GQQ 301 H 1 
HETATM 31 C C9 GQQ . . . EA 17 61.306 -134.902 35.027 1 99.34 ? C9 GQQ 301 H 1 
HETATM 32 C C40 GQQ . . . EA 17 62.041 -133.604 34.73 1 100.95 ? C40 GQQ 301 H 1 
HETATM 33 C C41 GQQ . . . EA 17 63.45 -133.658 35.346 1 96.05 ? C41 GQQ 301 H 1 
HETATM 34 C C43 GQQ . . . EA 17 64.075 -132.27 35.306 1 73.35 ? C43 GQQ 301 H 1 
HETATM 35 C C42 GQQ . . . EA 17 64.343 -134.65 34.597 1 77.5 ? C42 GQQ 301 H 1 
HETATM 36 N N8 GQQ . . . EA 17 60.072 -134.966 34.253 1 102.66 ? N8 GQQ 301 H 1 
HETATM 37 O O44 GQQ . . . EA 17 59.709 -137.191 34.668 1 97.19 ? O44 GQQ 301 H 1 
HETATM 38 N N6 GQQ . . . EA 17 57.859 -134.81 32.962 1 108.37 ? N6 GQQ 301 H 1 
HETATM 39 C C3 GQQ . . . EA 17 55.984 -135.718 31.732 1 101.86 ? C3 GQQ 301 H 1 
HETATM 40 N N2 GQQ . . . EA 17 56.368 -137.013 32.136 1 103.78 ? N2 GQQ 301 H 1 
HETATM 41 C C1 GQQ . . . EA 17 57.502 -137.169 32.957 1 108.81 ? C1 GQQ 301 H 1 
#
_model_server_stats.io_time_ms              98 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           41 
#