data_6HV7 # _model_server_result.job_id IcX2GojtDCH7pSaDg1e1XQ _model_server_result.datetime_utc '2024-11-04 22:23:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":301}' # _entry.id 6HV7 # _exptl.entry_id 6HV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.762 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.56 _cell.angle_gamma 90 _cell.entry_id 6HV7 _cell.length_a 134.07 _cell.length_b 302.11 _cell.length_c 143.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 EA N N ? 17 GA N N ? 17 KA N N ? 17 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H OG1 THR 1 H THR 1 1_555 EA C25 GQQ . H GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 K OG1 THR 1 K THR 1 1_555 GA C25 GQQ . K GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 V OG1 THR 1 V THR 1 1_555 KA C25 GQQ . V GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 Y OG1 THR 1 Y THR 1 1_555 NA C25 GQQ . Y GQQ 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 G OG1 THR 17 G THR 8 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc2 G O ALA 132 G ALA 123 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc3 G O MET 134 G MET 125 1_555 CA MG MG . G MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc4 I O SER 181 I SER 180 1_555 FA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc5 I OXT ASP 205 I ASP 204 1_555 FA MG MG . I MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc6 K O ASP 168 K ASP 168 1_555 HA MG MG . K MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc7 HA MG MG . K MG 302 1_555 W O ASP 205 W ASP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc8 L OXT ASP 222 L ASP 222 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 N O ILE 163 N ILE 163 1_555 IA MG MG . N MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc10 V O ILE 163 V ILE 163 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc11 V O ASP 166 V ASP 166 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc12 V O SER 169 V SER 169 1_555 LA MG MG . V MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc13 W O SER 181 W SER 180 1_555 MA MG MG . W MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc14 W OXT ASP 205 W ASP 204 1_555 MA MG MG . W MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc15 Y O HIS 166 Y HIS 166 1_555 OA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc16 Y O ASP 168 Y ASP 168 1_555 OA MG MG . Y MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc17 Z O THR 192 Z THR 192 1_555 PA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc18 Z O VAL 198 Z VAL 198 1_555 PA MG MG . Z MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? # _chem_comp.formula 'C29 H44 N6 O5 S' _chem_comp.formula_weight 588.762 _chem_comp.id GQQ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C3 GQQ doub 129 n y N2 C1 GQQ sing 130 n y C3 C4 GQQ sing 131 n y C1 C6 GQQ doub 132 n y C4 N6 GQQ doub 133 n y C6 N6 GQQ sing 134 n y C6 C7 GQQ sing 135 n n C7 O44 GQQ doub 136 n n C7 N8 GQQ sing 137 n n C43 C41 GQQ sing 138 n n N8 C9 GQQ sing 139 n n C42 C41 GQQ sing 140 n n C40 C41 GQQ sing 141 n n C40 C9 GQQ sing 142 n n C9 C10 GQQ sing 143 n n C10 O39 GQQ doub 144 n n C10 N11 GQQ sing 145 n n N11 C12 GQQ sing 146 n n C33 C34 GQQ sing 147 n n C33 C38 GQQ sing 148 n n C33 C32 GQQ sing 149 n n C12 C32 GQQ sing 150 n n C12 C13 GQQ sing 151 n n O31 C13 GQQ doub 152 n n C13 N14 GQQ sing 153 n n C21 N22 GQQ sing 154 n n C21 C20 GQQ sing 155 n n C23 C24 GQQ doub 156 n y C23 C20 GQQ sing 157 n y C24 C17 GQQ sing 158 n y N14 C15 GQQ sing 159 n n C20 C19 GQQ doub 160 n y C15 C25 GQQ sing 161 n n C15 C16 GQQ sing 162 n n C28 S27 GQQ sing 163 n n C17 C18 GQQ doub 164 n y C17 C16 GQQ sing 165 n n C19 C18 GQQ sing 166 n y C25 C26 GQQ sing 167 n n C26 S27 GQQ sing 168 n n S27 O29 GQQ doub 169 n n S27 O30 GQQ doub 170 n n C4 H1 GQQ sing 171 n n C15 H2 GQQ sing 172 n n C21 H3 GQQ sing 173 n n C21 H4 GQQ sing 174 n n C24 H5 GQQ sing 175 n n C26 H6 GQQ sing 176 n n C26 H7 GQQ sing 177 n n C28 H8 GQQ sing 178 n n C28 H9 GQQ sing 179 n n C28 H10 GQQ sing 180 n n C18 H11 GQQ sing 181 n n C19 H12 GQQ sing 182 n n N22 H13 GQQ sing 183 n n N22 H14 GQQ sing 184 n n C23 H16 GQQ sing 185 n n C16 H17 GQQ sing 186 n n C16 H18 GQQ sing 187 n n C25 H19 GQQ sing 188 n n C25 H20 GQQ sing 189 n n N14 H21 GQQ sing 190 n n C12 H22 GQQ sing 191 n n C32 H23 GQQ sing 192 n n C32 H24 GQQ sing 193 n n C33 H25 GQQ sing 194 n n C38 H26 GQQ sing 195 n n C38 H27 GQQ sing 196 n n C38 H28 GQQ sing 197 n n C34 H29 GQQ sing 198 n n C34 H30 GQQ sing 199 n n C34 H31 GQQ sing 200 n n N11 H32 GQQ sing 201 n n C9 H33 GQQ sing 202 n n C40 H34 GQQ sing 203 n n C40 H35 GQQ sing 204 n n C41 H36 GQQ sing 205 n n C43 H37 GQQ sing 206 n n C43 H38 GQQ sing 207 n n C43 H39 GQQ sing 208 n n C42 H40 GQQ sing 209 n n C42 H41 GQQ sing 210 n n C42 H42 GQQ sing 211 n n N8 H43 GQQ sing 212 n n C3 H44 GQQ sing 213 n n C1 H45 GQQ sing 214 n n # _atom_sites.entry_id 6HV7 _atom_sites.fract_transf_matrix[1][1] 0.007459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003099 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG G 1 301 6 MG MG . DA 16 CL G 1 302 9 CL CL . EA 17 GQQ H 1 301 0 GQQ LIG . FA 15 MG I 1 301 7 MG MG . GA 17 GQQ K 1 301 0 GQQ LIG . HA 15 MG K 1 302 1 MG MG . IA 15 MG N 1 201 5 MG MG . JA 16 CL U 1 301 10 CL CL . KA 17 GQQ V 1 301 0 GQQ LIG . LA 15 MG V 1 302 2 MG MG . MA 15 MG W 1 301 8 MG MG . NA 17 GQQ Y 1 301 0 GQQ LIG . OA 15 MG Y 1 302 4 MG MG . PA 15 MG Z 1 301 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 GQQ . . . KA 17 12.044 -163.653 30.521 1 109.48 ? C4 GQQ 301 V 1 HETATM 2 C C6 GQQ . . . KA 17 10.581 -162.458 31.93 1 112.76 ? C6 GQQ 301 V 1 HETATM 3 C C7 GQQ . . . KA 17 9.463 -162.493 32.744 1 107.9 ? C7 GQQ 301 V 1 HETATM 4 C C10 GQQ . . . KA 17 8.018 -164.05 34.931 1 97.43 ? C10 GQQ 301 V 1 HETATM 5 C C13 GQQ . . . KA 17 6.564 -163.17 38.118 1 104.46 ? C13 GQQ 301 V 1 HETATM 6 C C15 GQQ . . . KA 17 5.78 -163.98 40.3 1 105.24 ? C15 GQQ 301 V 1 HETATM 7 C C17 GQQ . . . KA 17 5.244 -166.371 40.148 1 108.61 ? C17 GQQ 301 V 1 HETATM 8 C C20 GQQ . . . KA 17 4.039 -168.497 38.691 1 110.24 ? C20 GQQ 301 V 1 HETATM 9 C C21 GQQ . . . KA 17 3.406 -169.504 37.927 1 104.83 ? C21 GQQ 301 V 1 HETATM 10 C C24 GQQ . . . KA 17 4.41 -166.134 39.032 1 113.27 ? C24 GQQ 301 V 1 HETATM 11 C C26 GQQ . . . KA 17 7.48 -162.724 41.71 1 106.78 ? C26 GQQ 301 V 1 HETATM 12 C C28 GQQ . . . KA 17 7.82 -159.776 41.195 1 107.89 ? C28 GQQ 301 V 1 HETATM 13 C C18 GQQ . . . KA 17 5.452 -167.701 40.518 1 109.21 ? C18 GQQ 301 V 1 HETATM 14 C C19 GQQ . . . KA 17 4.859 -168.751 39.81 1 116 ? C19 GQQ 301 V 1 HETATM 15 N N22 GQQ . . . KA 17 4.162 -170.771 37.799 1 78.13 ? N22 GQQ 301 V 1 HETATM 16 C C23 GQQ . . . KA 17 3.82 -167.173 38.32 1 111.14 ? C23 GQQ 301 V 1 HETATM 17 C C16 GQQ . . . KA 17 5.877 -165.409 40.926 1 103.86 ? C16 GQQ 301 V 1 HETATM 18 C C25 GQQ . . . KA 17 6.001 -162.827 41.308 1 104.09 ? C25 GQQ 301 V 1 HETATM 19 S S27 GQQ . . . KA 17 8.06 -161.11 42.352 1 105.44 ? S27 GQQ 301 V 1 HETATM 20 O O29 GQQ . . . KA 17 9.542 -161.221 42.65 1 115.93 ? O29 GQQ 301 V 1 HETATM 21 O O30 GQQ . . . KA 17 7.412 -160.789 43.677 1 115.62 ? O30 GQQ 301 V 1 HETATM 22 N N14 GQQ . . . KA 17 6.766 -163.885 39.224 1 102.95 ? N14 GQQ 301 V 1 HETATM 23 O O31 GQQ . . . KA 17 5.568 -162.486 37.884 1 96.01 ? O31 GQQ 301 V 1 HETATM 24 C C12 GQQ . . . KA 17 7.79 -163.146 37.226 1 103.12 ? C12 GQQ 301 V 1 HETATM 25 C C32 GQQ . . . KA 17 8.482 -161.829 37.635 1 98.19 ? C32 GQQ 301 V 1 HETATM 26 C C33 GQQ . . . KA 17 9.788 -161.58 36.875 1 89.69 ? C33 GQQ 301 V 1 HETATM 27 C C38 GQQ . . . KA 17 10.364 -160.205 37.268 1 76.34 ? C38 GQQ 301 V 1 HETATM 28 C C34 GQQ . . . KA 17 10.772 -162.723 37.185 1 68.94 ? C34 GQQ 301 V 1 HETATM 29 N N11 GQQ . . . KA 17 7.47 -163.159 35.793 1 99.3 ? N11 GQQ 301 V 1 HETATM 30 O O39 GQQ . . . KA 17 8.808 -164.956 35.215 1 81.09 ? O39 GQQ 301 V 1 HETATM 31 C C9 GQQ . . . KA 17 7.58 -163.858 33.486 1 101.03 ? C9 GQQ 301 V 1 HETATM 32 C C40 GQQ . . . KA 17 6.815 -165.089 32.998 1 99.47 ? C40 GQQ 301 V 1 HETATM 33 C C41 GQQ . . . KA 17 5.414 -165.132 33.644 1 91.48 ? C41 GQQ 301 V 1 HETATM 34 C C43 GQQ . . . KA 17 4.782 -166.491 33.405 1 89.76 ? C43 GQQ 301 V 1 HETATM 35 C C42 GQQ . . . KA 17 4.5 -164.029 33.088 1 68.39 ? C42 GQQ 301 V 1 HETATM 36 N N8 GQQ . . . KA 17 8.787 -163.66 32.695 1 101.48 ? N8 GQQ 301 V 1 HETATM 37 O O44 GQQ . . . KA 17 9.146 -161.512 33.424 1 113.41 ? O44 GQQ 301 V 1 HETATM 38 N N6 GQQ . . . KA 17 10.94 -163.614 31.349 1 107.24 ? N6 GQQ 301 V 1 HETATM 39 C C3 GQQ . . . KA 17 12.814 -162.517 30.255 1 118.72 ? C3 GQQ 301 V 1 HETATM 40 N N2 GQQ . . . KA 17 12.437 -161.298 30.864 1 114.51 ? N2 GQQ 301 V 1 HETATM 41 C C1 GQQ . . . KA 17 11.307 -161.273 31.712 1 121.39 ? C1 GQQ 301 V 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 236 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 41 #