data_6HVF # _model_server_result.job_id AAgQQ413LeLIT3OM0Zm0cA _model_server_result.datetime_utc '2024-12-22 01:57:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":602}' # _entry.id 6HVF # _exptl.entry_id 6HVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.23 _cell.angle_beta 91.64 _cell.angle_gamma 90.03 _cell.entry_id 6HVF _cell.length_a 42.17 _cell.length_b 62.97 _cell.length_c 74.54 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 98 A CYS 345 1_555 C CBH GUT . A GUT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale2 B SG CYS 98 B CYS 345 1_555 F CBH GUT . B GUT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6HVF _atom_sites.fract_transf_matrix[1][1] 0.023714 _atom_sites.fract_transf_matrix[1][2] 0.000013 _atom_sites.fract_transf_matrix[1][3] 0.000694 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015881 _atom_sites.fract_transf_matrix[2][3] 0.002869 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GUT A 1 601 2 GUT DRG . D 3 EDO A 1 602 1 EDO EDO . E 3 EDO A 1 603 3 EDO EDO . F 2 GUT B 1 601 1 GUT DRG . G 3 EDO B 1 602 4 EDO EDO . H 4 HOH A 1 701 2 HOH HOH . H 4 HOH A 2 702 134 HOH HOH . H 4 HOH A 3 703 116 HOH HOH . H 4 HOH A 4 704 11 HOH HOH . H 4 HOH A 5 705 10 HOH HOH . H 4 HOH A 6 706 98 HOH HOH . H 4 HOH A 7 707 3 HOH HOH . H 4 HOH A 8 708 21 HOH HOH . H 4 HOH A 9 709 79 HOH HOH . H 4 HOH A 10 710 20 HOH HOH . H 4 HOH A 11 711 1 HOH HOH . H 4 HOH A 12 712 8 HOH HOH . H 4 HOH A 13 713 206 HOH HOH . H 4 HOH A 14 714 5 HOH HOH . H 4 HOH A 15 715 67 HOH HOH . H 4 HOH A 16 716 42 HOH HOH . H 4 HOH A 17 717 201 HOH HOH . H 4 HOH A 18 718 25 HOH HOH . H 4 HOH A 19 719 24 HOH HOH . H 4 HOH A 20 720 81 HOH HOH . H 4 HOH A 21 721 36 HOH HOH . H 4 HOH A 22 722 12 HOH HOH . H 4 HOH A 23 723 112 HOH HOH . H 4 HOH A 24 724 65 HOH HOH . H 4 HOH A 25 725 13 HOH HOH . H 4 HOH A 26 726 18 HOH HOH . H 4 HOH A 27 727 195 HOH HOH . H 4 HOH A 28 728 100 HOH HOH . H 4 HOH A 29 729 50 HOH HOH . H 4 HOH A 30 730 170 HOH HOH . H 4 HOH A 31 731 111 HOH HOH . H 4 HOH A 32 732 22 HOH HOH . H 4 HOH A 33 733 9 HOH HOH . H 4 HOH A 34 734 214 HOH HOH . H 4 HOH A 35 735 35 HOH HOH . H 4 HOH A 36 736 51 HOH HOH . H 4 HOH A 37 737 97 HOH HOH . H 4 HOH A 38 738 38 HOH HOH . H 4 HOH A 39 739 88 HOH HOH . H 4 HOH A 40 740 39 HOH HOH . H 4 HOH A 41 741 215 HOH HOH . H 4 HOH A 42 742 37 HOH HOH . H 4 HOH A 43 743 23 HOH HOH . H 4 HOH A 44 744 7 HOH HOH . H 4 HOH A 45 745 6 HOH HOH . H 4 HOH A 46 746 57 HOH HOH . H 4 HOH A 47 747 26 HOH HOH . H 4 HOH A 48 748 175 HOH HOH . H 4 HOH A 49 749 138 HOH HOH . H 4 HOH A 50 750 114 HOH HOH . H 4 HOH A 51 751 207 HOH HOH . H 4 HOH A 52 752 40 HOH HOH . H 4 HOH A 53 753 166 HOH HOH . H 4 HOH A 54 754 110 HOH HOH . H 4 HOH A 55 755 27 HOH HOH . H 4 HOH A 56 756 19 HOH HOH . H 4 HOH A 57 757 109 HOH HOH . H 4 HOH A 58 758 73 HOH HOH . H 4 HOH A 59 759 113 HOH HOH . H 4 HOH A 60 760 173 HOH HOH . H 4 HOH A 61 761 221 HOH HOH . H 4 HOH A 62 762 202 HOH HOH . H 4 HOH A 63 763 162 HOH HOH . H 4 HOH A 64 764 64 HOH HOH . H 4 HOH A 65 765 90 HOH HOH . H 4 HOH A 66 766 224 HOH HOH . H 4 HOH A 67 767 69 HOH HOH . H 4 HOH A 68 768 164 HOH HOH . H 4 HOH A 69 769 136 HOH HOH . H 4 HOH A 70 770 226 HOH HOH . H 4 HOH A 71 771 222 HOH HOH . H 4 HOH A 72 772 194 HOH HOH . H 4 HOH A 73 773 144 HOH HOH . H 4 HOH A 74 774 216 HOH HOH . H 4 HOH A 75 775 83 HOH HOH . H 4 HOH A 76 776 183 HOH HOH . I 4 HOH B 1 701 209 HOH HOH . I 4 HOH B 2 702 56 HOH HOH . I 4 HOH B 3 703 187 HOH HOH . I 4 HOH B 4 704 77 HOH HOH . I 4 HOH B 5 705 54 HOH HOH . I 4 HOH B 6 706 218 HOH HOH . I 4 HOH B 7 707 147 HOH HOH . I 4 HOH B 8 708 198 HOH HOH . I 4 HOH B 9 709 220 HOH HOH . I 4 HOH B 10 710 4 HOH HOH . I 4 HOH B 11 711 30 HOH HOH . I 4 HOH B 12 712 145 HOH HOH . I 4 HOH B 13 713 212 HOH HOH . I 4 HOH B 14 714 125 HOH HOH . I 4 HOH B 15 715 55 HOH HOH . I 4 HOH B 16 716 130 HOH HOH . I 4 HOH B 17 717 126 HOH HOH . I 4 HOH B 18 718 89 HOH HOH . I 4 HOH B 19 719 119 HOH HOH . I 4 HOH B 20 720 91 HOH HOH . I 4 HOH B 21 721 46 HOH HOH . I 4 HOH B 22 722 17 HOH HOH . I 4 HOH B 23 723 158 HOH HOH . I 4 HOH B 24 724 95 HOH HOH . I 4 HOH B 25 725 52 HOH HOH . I 4 HOH B 26 726 47 HOH HOH . I 4 HOH B 27 727 103 HOH HOH . I 4 HOH B 28 728 93 HOH HOH . I 4 HOH B 29 729 29 HOH HOH . I 4 HOH B 30 730 68 HOH HOH . I 4 HOH B 31 731 32 HOH HOH . I 4 HOH B 32 732 59 HOH HOH . I 4 HOH B 33 733 120 HOH HOH . I 4 HOH B 34 734 70 HOH HOH . I 4 HOH B 35 735 75 HOH HOH . I 4 HOH B 36 736 16 HOH HOH . I 4 HOH B 37 737 82 HOH HOH . I 4 HOH B 38 738 99 HOH HOH . I 4 HOH B 39 739 160 HOH HOH . I 4 HOH B 40 740 85 HOH HOH . I 4 HOH B 41 741 60 HOH HOH . I 4 HOH B 42 742 62 HOH HOH . I 4 HOH B 43 743 105 HOH HOH . I 4 HOH B 44 744 33 HOH HOH . I 4 HOH B 45 745 80 HOH HOH . I 4 HOH B 46 746 154 HOH HOH . I 4 HOH B 47 747 31 HOH HOH . I 4 HOH B 48 748 58 HOH HOH . I 4 HOH B 49 749 34 HOH HOH . I 4 HOH B 50 750 15 HOH HOH . I 4 HOH B 51 751 108 HOH HOH . I 4 HOH B 52 752 159 HOH HOH . I 4 HOH B 53 753 142 HOH HOH . I 4 HOH B 54 754 153 HOH HOH . I 4 HOH B 55 755 107 HOH HOH . I 4 HOH B 56 756 196 HOH HOH . I 4 HOH B 57 757 131 HOH HOH . I 4 HOH B 58 758 217 HOH HOH . I 4 HOH B 59 759 213 HOH HOH . I 4 HOH B 60 760 148 HOH HOH . I 4 HOH B 61 761 179 HOH HOH . I 4 HOH B 62 762 94 HOH HOH . I 4 HOH B 63 763 66 HOH HOH . I 4 HOH B 64 764 122 HOH HOH . I 4 HOH B 65 765 14 HOH HOH . I 4 HOH B 66 766 71 HOH HOH . I 4 HOH B 67 767 189 HOH HOH . I 4 HOH B 68 768 48 HOH HOH . I 4 HOH B 69 769 45 HOH HOH . I 4 HOH B 70 770 63 HOH HOH . I 4 HOH B 71 771 72 HOH HOH . I 4 HOH B 72 772 41 HOH HOH . I 4 HOH B 73 773 127 HOH HOH . I 4 HOH B 74 774 123 HOH HOH . I 4 HOH B 75 775 199 HOH HOH . I 4 HOH B 76 776 167 HOH HOH . I 4 HOH B 77 777 96 HOH HOH . I 4 HOH B 78 778 84 HOH HOH . I 4 HOH B 79 779 124 HOH HOH . I 4 HOH B 80 780 43 HOH HOH . I 4 HOH B 81 781 197 HOH HOH . I 4 HOH B 82 782 53 HOH HOH . I 4 HOH B 83 783 185 HOH HOH . I 4 HOH B 84 784 78 HOH HOH . I 4 HOH B 85 785 168 HOH HOH . I 4 HOH B 86 786 172 HOH HOH . I 4 HOH B 87 787 143 HOH HOH . I 4 HOH B 88 788 204 HOH HOH . I 4 HOH B 89 789 155 HOH HOH . I 4 HOH B 90 790 118 HOH HOH . I 4 HOH B 91 791 223 HOH HOH . I 4 HOH B 92 792 211 HOH HOH . I 4 HOH B 93 793 121 HOH HOH . I 4 HOH B 94 794 225 HOH HOH . I 4 HOH B 95 795 205 HOH HOH . I 4 HOH B 96 796 44 HOH HOH . I 4 HOH B 97 797 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 -0.928 -11.821 22.416 1 65.53 ? C1 EDO 602 B 1 HETATM 2 O O1 EDO . . . G 3 -1.671 -12.819 23.123 1 65.56 ? O1 EDO 602 B 1 HETATM 3 C C2 EDO . . . G 3 -0.513 -12.343 21.045 1 66.3 ? C2 EDO 602 B 1 HETATM 4 O O2 EDO . . . G 3 0.84 -11.954 20.773 1 68.47 ? O2 EDO 602 B 1 HETATM 5 H H11 EDO . . . G 3 -0.039 -11.55 22.99 1 78.64 ? H11 EDO 602 B 1 HETATM 6 H H12 EDO . . . G 3 -1.54 -10.924 22.297 1 78.64 ? H12 EDO 602 B 1 HETATM 7 H HO1 EDO . . . G 3 -1.928 -12.476 23.99 1 78.68 ? HO1 EDO 602 B 1 HETATM 8 H H21 EDO . . . G 3 -1.176 -11.936 20.279 1 79.55 ? H21 EDO 602 B 1 HETATM 9 H H22 EDO . . . G 3 -0.596 -13.432 21.025 1 79.55 ? H22 EDO 602 B 1 HETATM 10 H HO2 EDO . . . G 3 1.102 -12.287 19.903 1 82.17 ? HO2 EDO 602 B 1 # _model_server_stats.io_time_ms 137 _model_server_stats.parse_time_ms 237 _model_server_stats.create_model_time_ms 118 _model_server_stats.query_time_ms 600 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #