data_6HVL
#
_model_server_result.job_id            XMnbmKMBntW8LUNUvXcXfQ 
_model_server_result.datetime_utc      '2025-01-10 20:53:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    6HVL 
#
_exptl.entry_id    6HVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6HVL 
_cell.length_a            121.9 
_cell.length_b            121.9 
_cell.length_c            141.16 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1,2 
B,F,H 2 1 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 60.95 -35.189499 94.106667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 76 A ASP 71 1_555 D CO CO . A CO 202 16_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc2 A OD2 ASP 76 A ASP 71 1_555 D CO CO . A CO 202 16_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc3 A OE1 GLU 129 A GLU 124 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 C O2P 2BA . A 2BA 201 1_555 D CO CO . A CO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 87 n n 
P O2P AMP sing 88 n n 
P O3P AMP sing 89 n n 
P O5' AMP sing 90 n n 
O2P HOP2 AMP sing 91 n n 
O3P HOP3 AMP sing 92 n n 
O5' C5' AMP sing 93 n n 
C5' C4' AMP sing 94 n n 
C5' "H5'1" AMP sing 95 n n 
C5' "H5'2" AMP sing 96 n n 
C4' O4' AMP sing 97 n n 
C4' C3' AMP sing 98 n n 
C4' H4' AMP sing 99 n n 
O4' C1' AMP sing 100 n n 
C3' O3' AMP sing 101 n n 
C3' C2' AMP sing 102 n n 
C3' H3' AMP sing 103 n n 
O3' HO3' AMP sing 104 n n 
C2' O2' AMP sing 105 n n 
C2' C1' AMP sing 106 n n 
C2' H2' AMP sing 107 n n 
O2' HO2' AMP sing 108 n n 
C1' N9 AMP sing 109 n n 
C1' H1' AMP sing 110 n n 
N9 C8 AMP sing 111 n y 
N9 C4 AMP sing 112 n y 
C8 N7 AMP doub 113 n y 
C8 H8 AMP sing 114 n n 
N7 C5 AMP sing 115 n y 
C5 C6 AMP sing 116 n y 
C5 C4 AMP doub 117 n y 
C6 N6 AMP sing 118 n n 
C6 N1 AMP doub 119 n y 
N6 HN61 AMP sing 120 n n 
N6 HN62 AMP sing 121 n n 
N1 C2 AMP sing 122 n y 
C2 N3 AMP doub 123 n y 
C2 H2 AMP sing 124 n n 
N3 C4 AMP sing 125 n y 
#
_atom_sites.entry_id                     6HVL 
_atom_sites.fract_transf_matrix[1][1]    0.008203 
_atom_sites.fract_transf_matrix[1][2]    0.004736 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009473 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2BA A 1 201 2 2BA 2BA . 
D 3 CO A 1 202 1 CO CO . 
E 4 PO4 A 1 203 1 PO4 PO4 . 
F 5 AMP B 1 201 1 AMP AMP . 
G 6 HOH A 1 301 6 HOH HOH . 
G 6 HOH A 2 302 14 HOH HOH . 
G 6 HOH A 3 303 13 HOH HOH . 
G 6 HOH A 4 304 8 HOH HOH . 
H 6 HOH B 1 301 10 HOH HOH . 
H 6 HOH B 2 302 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . F 5 72.371 80.016 26.747 1 98.98 ? P AMP 201 B 1 
HETATM 2 O O1P AMP . . . F 5 73.318 79.465 25.706 1 91.71 ? O1P AMP 201 B 1 
HETATM 3 O O2P AMP . . . F 5 72.674 79.573 28.16 1 102.23 ? O2P AMP 201 B 1 
HETATM 4 O O3P AMP . . . F 5 70.908 79.946 26.376 1 104.03 ? O3P AMP 201 B 1 
HETATM 5 O O5' AMP . . . F 5 72.683 81.577 26.786 1 95.75 ? O5' AMP 201 B 1 
HETATM 6 C C5' AMP . . . F 5 73.691 82.088 27.646 1 93.38 ? C5' AMP 201 B 1 
HETATM 7 C C4' AMP . . . F 5 74.184 83.434 27.186 1 83.69 ? C4' AMP 201 B 1 
HETATM 8 O O4' AMP . . . F 5 73.724 83.684 25.842 1 78.96 ? O4' AMP 201 B 1 
HETATM 9 C C3' AMP . . . F 5 73.662 84.628 27.964 1 85.7 ? C3' AMP 201 B 1 
HETATM 10 O O3' AMP . . . F 5 74.348 84.833 29.187 1 88.16 ? O3' AMP 201 B 1 
HETATM 11 C C2' AMP . . . F 5 73.813 85.781 26.972 1 81.48 ? C2' AMP 201 B 1 
HETATM 12 O O2' AMP . . . F 5 75.117 86.339 27.046 1 89.31 ? O2' AMP 201 B 1 
HETATM 13 C C1' AMP . . . F 5 73.666 85.073 25.618 1 78 ? C1' AMP 201 B 1 
HETATM 14 N N9 AMP . . . F 5 72.392 85.403 24.953 1 83.09 ? N9 AMP 201 B 1 
HETATM 15 C C8 AMP . . . F 5 71.234 84.726 25.072 1 82.04 ? C8 AMP 201 B 1 
HETATM 16 N N7 AMP . . . F 5 70.254 85.3 24.326 1 78.63 ? N7 AMP 201 B 1 
HETATM 17 C C5 AMP . . . F 5 70.787 86.371 23.71 1 76.04 ? C5 AMP 201 B 1 
HETATM 18 C C6 AMP . . . F 5 70.307 87.418 22.779 1 74.16 ? C6 AMP 201 B 1 
HETATM 19 N N6 AMP . . . F 5 69.024 87.436 22.348 1 81.54 ? N6 AMP 201 B 1 
HETATM 20 N N1 AMP . . . F 5 71.189 88.358 22.375 1 71.07 ? N1 AMP 201 B 1 
HETATM 21 C C2 AMP . . . F 5 72.465 88.354 22.798 1 72.81 ? C2 AMP 201 B 1 
HETATM 22 N N3 AMP . . . F 5 72.969 87.435 23.641 1 79.05 ? N3 AMP 201 B 1 
HETATM 23 C C4 AMP . . . F 5 72.195 86.434 24.125 1 80.98 ? C4 AMP 201 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#