data_6HW1 # _model_server_result.job_id AN-_y1GVHwki-DY8mI-0dw _model_server_result.datetime_utc '2025-01-10 08:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6HW1 # _exptl.entry_id 6HW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6HW1 _cell.length_a 142.652 _cell.length_b 142.652 _cell.length_c 80.721 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 36 A CYS 36 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 36 B CYS 36 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 33 A ASN 33 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 B ND2 ASN 33 B ASN 33 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? metalc ? metalc1 G MG MG . B MG 302 1_555 I O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 G MG MG . B MG 302 1_555 I O HOH . B HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 218 n n C1 O1 NAG sing 219 n n C1 O5 NAG sing 220 n n C1 H1 NAG sing 221 n n C2 C3 NAG sing 222 n n C2 N2 NAG sing 223 n n C2 H2 NAG sing 224 n n C3 C4 NAG sing 225 n n C3 O3 NAG sing 226 n n C3 H3 NAG sing 227 n n C4 C5 NAG sing 228 n n C4 O4 NAG sing 229 n n C4 H4 NAG sing 230 n n C5 C6 NAG sing 231 n n C5 O5 NAG sing 232 n n C5 H5 NAG sing 233 n n C6 O6 NAG sing 234 n n C6 H61 NAG sing 235 n n C6 H62 NAG sing 236 n n C7 C8 NAG sing 237 n n C7 N2 NAG sing 238 n n C7 O7 NAG doub 239 n n C8 H81 NAG sing 240 n n C8 H82 NAG sing 241 n n C8 H83 NAG sing 242 n n N2 HN2 NAG sing 243 n n O1 HO1 NAG sing 244 n n O3 HO3 NAG sing 245 n n O4 HO4 NAG sing 246 n n O6 HO6 NAG sing 247 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HW1 _atom_sites.fract_transf_matrix[1][1] 0.00701 _atom_sites.fract_transf_matrix[1][2] 0.004047 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 301 270 NAG NAG . D 3 PO4 A 1 302 1 PO4 PO4 . E 4 MG A 1 303 2 MG MG . F 2 NAG B 1 301 270 NAG NAG . G 4 MG B 1 302 1 MG MG . H 5 HOH A 1 401 45 HOH HOH . H 5 HOH A 2 402 14 HOH HOH . H 5 HOH A 3 403 8 HOH HOH . H 5 HOH A 4 404 44 HOH HOH . H 5 HOH A 5 405 21 HOH HOH . H 5 HOH A 6 406 7 HOH HOH . H 5 HOH A 7 407 23 HOH HOH . H 5 HOH A 8 408 11 HOH HOH . H 5 HOH A 9 409 35 HOH HOH . H 5 HOH A 10 410 1 HOH HOH . H 5 HOH A 11 411 19 HOH HOH . H 5 HOH A 12 412 33 HOH HOH . H 5 HOH A 13 413 3 HOH HOH . H 5 HOH A 14 414 18 HOH HOH . H 5 HOH A 15 415 24 HOH HOH . H 5 HOH A 16 416 28 HOH HOH . H 5 HOH A 17 417 2 HOH HOH . H 5 HOH A 18 418 32 HOH HOH . H 5 HOH A 19 419 31 HOH HOH . H 5 HOH A 20 420 10 HOH HOH . H 5 HOH A 21 421 29 HOH HOH . H 5 HOH A 22 422 12 HOH HOH . I 5 HOH B 1 401 27 HOH HOH . I 5 HOH B 2 402 47 HOH HOH . I 5 HOH B 3 403 15 HOH HOH . I 5 HOH B 4 404 25 HOH HOH . I 5 HOH B 5 405 22 HOH HOH . I 5 HOH B 6 406 9 HOH HOH . I 5 HOH B 7 407 30 HOH HOH . I 5 HOH B 8 408 4 HOH HOH . I 5 HOH B 9 409 39 HOH HOH . I 5 HOH B 10 410 36 HOH HOH . I 5 HOH B 11 411 6 HOH HOH . I 5 HOH B 12 412 42 HOH HOH . I 5 HOH B 13 413 5 HOH HOH . I 5 HOH B 14 414 17 HOH HOH . I 5 HOH B 15 415 13 HOH HOH . I 5 HOH B 16 416 46 HOH HOH . I 5 HOH B 17 417 16 HOH HOH . I 5 HOH B 18 418 40 HOH HOH . I 5 HOH B 19 419 38 HOH HOH . I 5 HOH B 20 420 26 HOH HOH . I 5 HOH B 21 421 40 HOH HOH . I 5 HOH B 22 422 20 HOH HOH . I 5 HOH B 23 423 37 HOH HOH . I 5 HOH B 24 424 34 HOH HOH . I 5 HOH B 25 425 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 -17.109 -57.811 -2.767 1 215.16 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . C 2 -16.198 -58.92 -2.248 1 249.88 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . C 2 -16.237 -60.115 -3.193 1 280.99 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . C 2 -17.674 -60.573 -3.404 1 286.58 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . C 2 -18.542 -59.403 -3.86 1 268.25 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . C 2 -20.008 -59.759 -3.947 1 276.66 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . C 2 -14.447 -57.691 -1.045 1 262.21 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . C 2 -13.002 -57.293 -1.028 1 266.93 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . C 2 -14.835 -58.444 -2.08 1 255.34 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . C 2 -15.463 -61.178 -2.649 1 299.05 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . C 2 -17.719 -61.602 -4.386 1 307.66 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . C 2 -18.438 -58.316 -2.927 1 240.93 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . C 2 -20.65 -59.62 -2.687 1 285.27 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . C 2 -15.228 -57.347 -0.164 1 264.31 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 14 #