data_6HWH # _model_server_result.job_id C-JyZEqEKxvUEM2oWkiGuQ _model_server_result.datetime_utc '2024-11-04 22:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hwh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":804}' # _entry.id 6HWH # _exptl.entry_id 6HWH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HWH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA 28-meric 28 author_and_software_defined_assembly 1 PISA 26-meric 26 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 19 KA N N ? 19 FB N N ? 19 GB N N ? 19 HB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 A CYS 338 1_555 A SG CYS 354 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 N SG CYS 338 B CYS 338 1_555 N SG CYS 354 B CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A ND1 HIS 335 A HIS 335 1_555 CA FE2 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc2 G ND1 HIS 232 P HIS 232 1_555 GA CU CU . P CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc3 G SG CYS 273 P CYS 273 1_555 FA CU CU . P CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc4 G SG CYS 273 P CYS 273 1_555 GA CU CU . P CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc5 G SG CYS 277 P CYS 277 1_555 FA CU CU . P CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 G SG CYS 277 P CYS 277 1_555 GA CU CU . P CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 G ND1 HIS 281 P HIS 281 1_555 FA CU CU . P CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc8 G SD MET 284 P MET 284 1_555 GA CU CU . P CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc9 J NE2 HIS 86 V HIS 86 1_555 IA FE HAS . V HAS 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc10 J ND1 HIS 264 V HIS 264 1_555 JA CU CU . V CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 J NE2 HIS 313 V HIS 313 1_555 JA CU CU . V CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc12 J NE2 HIS 314 V HIS 314 1_555 JA CU CU . V CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc13 J NE2 HIS 397 V HIS 397 1_555 HA FE HAS . V HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc14 J NE2 HIS 399 V HIS 399 1_555 IA FE HAS . V HAS 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc15 M NE2 HIS 109 b HIS 109 1_555 NA FE HEM . b HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc16 M NE2 HIS 123 b HIS 123 1_555 MA FE HEM . b HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc17 M NE2 HIS 211 b HIS 211 1_555 NA FE HEM . b HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc18 M NE2 HIS 226 b HIS 226 1_555 MA FE HEM . b HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc19 N O HIS 335 B HIS 335 1_555 RA FE2 FES . B FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc20 N ND1 HIS 335 B HIS 335 1_555 RA FE2 FES . B FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc21 N ND1 HIS 355 B HIS 355 1_555 RA FE2 FES . B FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc22 T ND1 HIS 232 L HIS 232 1_555 UA CU CU . L CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc23 T SG CYS 273 L CYS 273 1_555 TA CU CU . L CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc24 T SG CYS 273 L CYS 273 1_555 UA CU CU . L CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc25 T SG CYS 277 L CYS 277 1_555 TA CU CU . L CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc26 T SG CYS 277 L CYS 277 1_555 UA CU CU . L CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc27 T ND1 HIS 281 L HIS 281 1_555 TA CU CU . L CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc28 T SD MET 284 L MET 284 1_555 TA CU CU . L CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc29 T SD MET 284 L MET 284 1_555 UA CU CU . L CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc30 W NE2 HIS 86 Q HIS 86 1_555 WA FE HAS . Q HAS 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc31 W ND1 HIS 264 Q HIS 264 1_555 XA CU CU . Q CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc32 W NE2 HIS 313 Q HIS 313 1_555 XA CU CU . Q CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc33 W NE2 HIS 314 Q HIS 314 1_555 XA CU CU . Q CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc34 W NE2 HIS 397 Q HIS 397 1_555 VA FE HAS . Q HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc35 W NE2 HIS 399 Q HIS 399 1_555 WA FE HAS . Q HAS 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc36 Z NE2 HIS 109 Y HIS 109 1_555 ZA FE HEM . Y HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc37 Z NE2 HIS 123 Y HIS 123 1_555 AB FE HEM . Y HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc38 Z NE2 HIS 211 Y HIS 211 1_555 ZA FE HEM . Y HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc39 Z NE2 HIS 226 Y HIS 226 1_555 AB FE HEM . Y HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? covale ? covale1 BA C THR 93 j THR 93 1_555 GB O1A HEC . j HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 BA O THR 93 j THR 93 1_555 GB CBA HEC . j HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.235 ? covale ? covale3 BA O THR 93 j THR 93 1_555 GB CGA HEC . j HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.197 ? metalc ? metalc40 FA CU CU . P CU 401 1_555 GA CU CU . P CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc41 TA CU CU . L CU 401 1_555 UA CU CU . L CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HWH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 14 FES A 1 501 501 FES FES . DA 15 CDL M 1 301 201 CDL CDL . EA 16 MQ9 M 1 302 2 MQ9 MQ9 . FA 17 CU P 1 401 401 CU CU . GA 17 CU P 1 402 501 CU CU . HA 18 HAS V 1 801 801 HAS HAS . IA 18 HAS V 1 802 901 HAS HAS . JA 17 CU V 1 803 1001 CU CU . KA 19 HEC V 1 804 302 HEC HEC . LA 15 CDL V 1 805 301 CDL CDL . MA 20 HEM b 1 601 601 HEM HEB . NA 20 HEM b 1 602 701 HEM HEB . OA 15 CDL b 1 603 901 CDL CDL . PA 15 CDL b 1 604 1001 CDL CDL . QA 16 MQ9 b 1 605 1 MQ9 MQ9 . RA 14 FES B 1 501 501 FES FES . SA 15 CDL K 1 301 201 CDL CDL . TA 17 CU L 1 401 401 CU CU . UA 17 CU L 1 402 501 CU CU . VA 18 HAS Q 1 801 801 HAS HAS . WA 18 HAS Q 1 802 901 HAS HAS . XA 17 CU Q 1 803 1001 CU CU . YA 15 CDL Q 1 804 301 CDL CDL . ZA 20 HEM Y 1 601 601 HEM HEB . AB 20 HEM Y 1 602 701 HEM HEB . BB 15 CDL Y 1 603 301 CDL CDL . CB 15 CDL Y 1 604 801 CDL CDL . DB 16 MQ9 Y 1 605 1 MQ9 MQ9 . EB 16 MQ9 Y 1 606 2 MQ9 MQ9 . FB 19 HEC i 1 301 301 HEC HEC . GB 19 HEC j 1 301 301 HEC HEC . HB 19 HEC j 1 302 302 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . KA 19 211.598 150.862 167.638 1 20 ? FE HEC 804 V 1 HETATM 2 C CHA HEC . . . KA 19 208.658 152.625 166.98 1 20 ? CHA HEC 804 V 1 HETATM 3 C CHB HEC . . . KA 19 212.935 151.969 164.608 1 20 ? CHB HEC 804 V 1 HETATM 4 C CHC HEC . . . KA 19 214.517 149.044 168.27 1 20 ? CHC HEC 804 V 1 HETATM 5 C CHD HEC . . . KA 19 210.27 149.802 170.69 1 20 ? CHD HEC 804 V 1 HETATM 6 N NA HEC . . . KA 19 210.917 152.082 166.071 1 20 ? NA HEC 804 V 1 HETATM 7 C C1A HEC . . . KA 19 209.723 152.705 165.961 1 20 ? C1A HEC 804 V 1 HETATM 8 C C2A HEC . . . KA 19 209.538 153.505 164.723 1 20 ? C2A HEC 804 V 1 HETATM 9 C C3A HEC . . . KA 19 210.813 153.31 164.015 1 20 ? C3A HEC 804 V 1 HETATM 10 C C4A HEC . . . KA 19 211.57 152.425 164.939 1 20 ? C4A HEC 804 V 1 HETATM 11 C CMA HEC . . . KA 19 211.244 153.87 162.685 1 20 ? CMA HEC 804 V 1 HETATM 12 C CAA HEC . . . KA 19 208.336 154.313 164.297 1 20 ? CAA HEC 804 V 1 HETATM 13 C CBA HEC . . . KA 19 207.271 153.38 163.734 1 20 ? CBA HEC 804 V 1 HETATM 14 C CGA HEC . . . KA 19 205.961 154.118 163.597 1 20 ? CGA HEC 804 V 1 HETATM 15 O O1A HEC . . . KA 19 205.161 153.753 162.709 1 20 ? O1A HEC 804 V 1 HETATM 16 O O2A HEC . . . KA 19 205.725 155.066 164.377 1 20 ? O2A HEC 804 V 1 HETATM 17 N NB HEC . . . KA 19 213.408 150.561 166.617 1 20 ? NB HEC 804 V 1 HETATM 18 C C1B HEC . . . KA 19 213.786 151.075 165.418 1 20 ? C1B HEC 804 V 1 HETATM 19 C C2B HEC . . . KA 19 215.141 150.679 164.943 1 20 ? C2B HEC 804 V 1 HETATM 20 C C3B HEC . . . KA 19 215.582 149.816 166.043 1 20 ? C3B HEC 804 V 1 HETATM 21 C C4B HEC . . . KA 19 214.46 149.807 167.008 1 20 ? C4B HEC 804 V 1 HETATM 22 C CMB HEC . . . KA 19 215.861 151.062 163.677 1 20 ? CMB HEC 804 V 1 HETATM 23 C CAB HEC . . . KA 19 216.877 149.102 166.163 1 20 ? CAB HEC 804 V 1 HETATM 24 C CBB HEC . . . KA 19 217.912 149.227 165.071 1 20 ? CBB HEC 804 V 1 HETATM 25 N NC HEC . . . KA 19 212.277 149.637 169.204 1 20 ? NC HEC 804 V 1 HETATM 26 C C1C HEC . . . KA 19 213.465 148.984 169.305 1 20 ? C1C HEC 804 V 1 HETATM 27 C C2C HEC . . . KA 19 213.661 148.186 170.547 1 20 ? C2C HEC 804 V 1 HETATM 28 C C3C HEC . . . KA 19 212.392 148.431 171.238 1 20 ? C3C HEC 804 V 1 HETATM 29 C C4C HEC . . . KA 19 211.623 149.323 170.344 1 20 ? C4C HEC 804 V 1 HETATM 30 C CMC HEC . . . KA 19 214.84 147.353 170.975 1 20 ? CMC HEC 804 V 1 HETATM 31 C CAC HEC . . . KA 19 211.967 147.9 172.556 1 20 ? CAC HEC 804 V 1 HETATM 32 C CBC HEC . . . KA 19 212.888 146.996 173.338 1 20 ? CBC HEC 804 V 1 HETATM 33 N ND HEC . . . KA 19 209.784 151.161 168.656 1 20 ? ND HEC 804 V 1 HETATM 34 C C1D HEC . . . KA 19 209.414 150.671 169.86 1 20 ? C1D HEC 804 V 1 HETATM 35 C C2D HEC . . . KA 19 208.055 151.064 170.314 1 20 ? C2D HEC 804 V 1 HETATM 36 C C3D HEC . . . KA 19 207.574 151.905 169.208 1 20 ? C3D HEC 804 V 1 HETATM 37 C C4D HEC . . . KA 19 208.716 151.887 168.258 1 20 ? C4D HEC 804 V 1 HETATM 38 C CMD HEC . . . KA 19 207.347 150.694 171.591 1 20 ? CMD HEC 804 V 1 HETATM 39 C CAD HEC . . . KA 19 206.245 152.611 169.072 1 20 ? CAD HEC 804 V 1 HETATM 40 C CBD HEC . . . KA 19 206.455 154.119 169.137 1 20 ? CBD HEC 804 V 1 HETATM 41 C CGD HEC . . . KA 19 206.261 154.6 170.555 1 20 ? CGD HEC 804 V 1 HETATM 42 O O1D HEC . . . KA 19 206.91 154.044 171.467 1 20 ? O1D HEC 804 V 1 HETATM 43 O O2D HEC . . . KA 19 205.46 155.537 170.763 1 20 ? O2D HEC 804 V 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #