data_6HWM # _model_server_result.job_id COOxKRuhE2El2APsESyWzQ _model_server_result.datetime_utc '2025-07-08 03:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 6HWM # _exptl.entry_id 6HWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HWM _cell.length_a 135.139 _cell.length_b 168.74 _cell.length_c 166.083 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 83.0415 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 97 A SER 97 1_555 H B26 BO2 . A BO2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 B OG SER 97 B SER 97 1_555 I B26 BO2 . B BO2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale3 C OG SER 97 C SER 97 1_555 J B26 BO2 . C BO2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale4 D OG SER 97 D SER 97 1_555 L B26 BO2 . D BO2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale5 E OG SER 97 E SER 97 1_555 M B26 BO2 . E BO2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 F OG SER 97 F SER 97 1_555 O B26 BO2 . F BO2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale7 G OG SER 97 G SER 97 1_555 P B26 BO2 . G BO2 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C19 H25 B N4 O4' _chem_comp.formula_weight 384.237 _chem_comp.id BO2 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BORTEZOMIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BO2 sing 70 n y N1 C6 BO2 doub 71 n y C2 C3 BO2 doub 72 n y C2 C7 BO2 sing 73 n n C3 N4 BO2 sing 74 n y C3 H3 BO2 sing 75 n n N4 C5 BO2 doub 76 n y C5 C6 BO2 sing 77 n y C5 H5 BO2 sing 78 n n C6 H6 BO2 sing 79 n n C7 O8 BO2 doub 80 n n C7 N9 BO2 sing 81 n n N9 C10 BO2 sing 82 n n N9 HN9 BO2 sing 83 n n C10 C11 BO2 sing 84 n n C10 C18 BO2 sing 85 n n C10 H10 BO2 sing 86 n n C11 C12 BO2 sing 87 n n C11 H111 BO2 sing 88 n n C11 H112 BO2 sing 89 n n C12 C13 BO2 sing 90 n y C12 C17 BO2 doub 91 n y C13 C14 BO2 doub 92 n y C13 H13 BO2 sing 93 n n C14 C15 BO2 sing 94 n y C14 H14 BO2 sing 95 n n C15 C16 BO2 doub 96 n y C15 H15 BO2 sing 97 n n C16 C17 BO2 sing 98 n y C16 H16 BO2 sing 99 n n C17 H17 BO2 sing 100 n n C18 O19 BO2 doub 101 n n C18 N20 BO2 sing 102 n n N20 C21 BO2 sing 103 n n N20 H20 BO2 sing 104 n n C21 C22 BO2 sing 105 n n C21 B26 BO2 sing 106 n n C21 H21 BO2 sing 107 n n C22 C23 BO2 sing 108 n n C22 H221 BO2 sing 109 n n C22 H222 BO2 sing 110 n n C23 C24 BO2 sing 111 n n C23 C25 BO2 sing 112 n n C23 H23 BO2 sing 113 n n C24 H241 BO2 sing 114 n n C24 H242 BO2 sing 115 n n C24 H243 BO2 sing 116 n n C25 H251 BO2 sing 117 n n C25 H252 BO2 sing 118 n n C25 H253 BO2 sing 119 n n B26 O27 BO2 sing 120 n n B26 O28 BO2 sing 121 n n O27 H27 BO2 sing 122 n n O28 H28 BO2 sing 123 n n # _atom_sites.entry_id 6HWM _atom_sites.fract_transf_matrix[1][1] 0.0074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 BO2 A 1 301 1 BO2 BO2 . I 2 BO2 B 1 301 1 BO2 BO2 . J 2 BO2 C 1 301 1 BO2 BO2 . K 3 PEG C 1 302 3 PEG PEG . L 2 BO2 D 1 301 1 BO2 BO2 . M 2 BO2 E 1 301 1 BO2 BO2 . N 3 PEG E 1 302 1 PEG PEG . O 2 BO2 F 1 301 1 BO2 BO2 . P 2 BO2 G 1 301 1 BO2 BO2 . Q 3 PEG G 1 302 2 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BO2 . . . H 2 -11.632 -52.251 48.827 1 142.21 ? N1 BO2 301 A 1 HETATM 2 C C2 BO2 . . . H 2 -12.541 -53.131 48.398 1 124.02 ? C2 BO2 301 A 1 HETATM 3 C C3 BO2 . . . H 2 -13.08 -54.058 49.253 1 111.59 ? C3 BO2 301 A 1 HETATM 4 N N4 BO2 . . . H 2 -12.67 -54.059 50.51 1 117.76 ? N4 BO2 301 A 1 HETATM 5 C C5 BO2 . . . H 2 -11.758 -53.201 50.945 1 126.27 ? C5 BO2 301 A 1 HETATM 6 C C6 BO2 . . . H 2 -11.216 -52.264 50.086 1 137.1 ? C6 BO2 301 A 1 HETATM 7 C C7 BO2 . . . H 2 -13.029 -53.067 46.96 1 110.51 ? C7 BO2 301 A 1 HETATM 8 O O8 BO2 . . . H 2 -14.175 -52.825 46.746 1 101.88 ? O8 BO2 301 A 1 HETATM 9 N N9 BO2 . . . H 2 -12.085 -53.266 45.899 1 105.08 ? N9 BO2 301 A 1 HETATM 10 C C10 BO2 . . . H 2 -12.502 -53.147 44.51 1 108.04 ? C10 BO2 301 A 1 HETATM 11 C C11 BO2 . . . H 2 -11.546 -52.134 43.826 1 101.29 ? C11 BO2 301 A 1 HETATM 12 C C12 BO2 . . . H 2 -11.852 -50.699 44.213 1 111.16 ? C12 BO2 301 A 1 HETATM 13 C C13 BO2 . . . H 2 -11.575 -50.236 45.498 1 120.49 ? C13 BO2 301 A 1 HETATM 14 C C14 BO2 . . . H 2 -11.871 -48.912 45.815 1 128.55 ? C14 BO2 301 A 1 HETATM 15 C C15 BO2 . . . H 2 -12.432 -48.06 44.862 1 129.42 ? C15 BO2 301 A 1 HETATM 16 C C16 BO2 . . . H 2 -12.712 -48.531 43.58 1 126.55 ? C16 BO2 301 A 1 HETATM 17 C C17 BO2 . . . H 2 -12.42 -49.853 43.257 1 122.8 ? C17 BO2 301 A 1 HETATM 18 C C18 BO2 . . . H 2 -12.426 -54.471 43.735 1 108.93 ? C18 BO2 301 A 1 HETATM 19 O O19 BO2 . . . H 2 -11.845 -55.407 44.128 1 103.7 ? O19 BO2 301 A 1 HETATM 20 N N20 BO2 . . . H 2 -13.054 -54.533 42.444 1 109.88 ? N20 BO2 301 A 1 HETATM 21 C C21 BO2 . . . H 2 -13.044 -55.671 41.547 1 112.53 ? C21 BO2 301 A 1 HETATM 22 C C22 BO2 . . . H 2 -14.042 -56.719 42.102 1 113.02 ? C22 BO2 301 A 1 HETATM 23 C C23 BO2 . . . H 2 -13.835 -58.194 41.703 1 104.96 ? C23 BO2 301 A 1 HETATM 24 C C24 BO2 . . . H 2 -13.017 -59.01 42.721 1 94.17 ? C24 BO2 301 A 1 HETATM 25 C C25 BO2 . . . H 2 -15.217 -58.784 41.43 1 100.81 ? C25 BO2 301 A 1 HETATM 26 B B26 BO2 . . . H 2 -13.37 -54.94 40.133 1 115.04 ? B26 BO2 301 A 1 HETATM 27 O O27 BO2 . . . H 2 -14.677 -54.644 39.867 1 116.72 ? O27 BO2 301 A 1 HETATM 28 O O28 BO2 . . . H 2 -12.494 -54.062 39.574 1 113.04 ? O28 BO2 301 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #