data_6HX5 # _model_server_result.job_id M3prNFdUPzpZJGlPU4Q9YQ _model_server_result.datetime_utc '2024-11-05 01:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6HX5 # _exptl.entry_id 6HX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.072 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description benzeneselenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.29 _cell.angle_gamma 90 _cell.entry_id 6HX5 _cell.length_a 42.414 _cell.length_b 41.412 _cell.length_c 72.104 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C6 H6 Se' _chem_comp.formula_weight 157.072 _chem_comp.id GXE _chem_comp.mon_nstd_flag . _chem_comp.name benzeneselenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GXE doub 129 n y C1 C GXE sing 130 n y C2 C3 GXE sing 131 n y SE C GXE sing 132 n n C C5 GXE doub 133 n y C3 C4 GXE doub 134 n y C5 C4 GXE sing 135 n y SE H1 GXE sing 136 n n C1 H2 GXE sing 137 n n C2 H3 GXE sing 138 n n C3 H4 GXE sing 139 n n C4 H5 GXE sing 140 n n C5 H6 GXE sing 141 n n # _atom_sites.entry_id 6HX5 _atom_sites.fract_transf_matrix[1][1] 0.023577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 GXE A 1 302 1 GXE SeB . D 4 HOH A 1 401 131 HOH HOH . D 4 HOH A 2 402 151 HOH HOH . D 4 HOH A 3 403 168 HOH HOH . D 4 HOH A 4 404 139 HOH HOH . D 4 HOH A 5 405 100 HOH HOH . D 4 HOH A 6 406 156 HOH HOH . D 4 HOH A 7 407 82 HOH HOH . D 4 HOH A 8 408 25 HOH HOH . D 4 HOH A 9 409 145 HOH HOH . D 4 HOH A 10 410 172 HOH HOH . D 4 HOH A 11 411 42 HOH HOH . D 4 HOH A 12 412 29 HOH HOH . D 4 HOH A 13 413 28 HOH HOH . D 4 HOH A 14 414 146 HOH HOH . D 4 HOH A 15 415 31 HOH HOH . D 4 HOH A 16 416 22 HOH HOH . D 4 HOH A 17 417 121 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 107 HOH HOH . D 4 HOH A 20 420 18 HOH HOH . D 4 HOH A 21 421 9 HOH HOH . D 4 HOH A 22 422 62 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 55 HOH HOH . D 4 HOH A 25 425 166 HOH HOH . D 4 HOH A 26 426 77 HOH HOH . D 4 HOH A 27 427 118 HOH HOH . D 4 HOH A 28 428 136 HOH HOH . D 4 HOH A 29 429 162 HOH HOH . D 4 HOH A 30 430 64 HOH HOH . D 4 HOH A 31 431 15 HOH HOH . D 4 HOH A 32 432 44 HOH HOH . D 4 HOH A 33 433 51 HOH HOH . D 4 HOH A 34 434 108 HOH HOH . D 4 HOH A 35 435 134 HOH HOH . D 4 HOH A 36 436 143 HOH HOH . D 4 HOH A 37 437 40 HOH HOH . D 4 HOH A 38 438 3 HOH HOH . D 4 HOH A 39 439 164 HOH HOH . D 4 HOH A 40 440 137 HOH HOH . D 4 HOH A 41 441 169 HOH HOH . D 4 HOH A 42 442 159 HOH HOH . D 4 HOH A 43 443 181 HOH HOH . D 4 HOH A 44 444 11 HOH HOH . D 4 HOH A 45 445 105 HOH HOH . D 4 HOH A 46 446 113 HOH HOH . D 4 HOH A 47 447 122 HOH HOH . D 4 HOH A 48 448 4 HOH HOH . D 4 HOH A 49 449 86 HOH HOH . D 4 HOH A 50 450 13 HOH HOH . D 4 HOH A 51 451 130 HOH HOH . D 4 HOH A 52 452 152 HOH HOH . D 4 HOH A 53 453 37 HOH HOH . D 4 HOH A 54 454 103 HOH HOH . D 4 HOH A 55 455 84 HOH HOH . D 4 HOH A 56 456 14 HOH HOH . D 4 HOH A 57 457 76 HOH HOH . D 4 HOH A 58 458 52 HOH HOH . D 4 HOH A 59 459 154 HOH HOH . D 4 HOH A 60 460 7 HOH HOH . D 4 HOH A 61 461 140 HOH HOH . D 4 HOH A 62 462 180 HOH HOH . D 4 HOH A 63 463 12 HOH HOH . D 4 HOH A 64 464 174 HOH HOH . D 4 HOH A 65 465 158 HOH HOH . D 4 HOH A 66 466 68 HOH HOH . D 4 HOH A 67 467 2 HOH HOH . D 4 HOH A 68 468 99 HOH HOH . D 4 HOH A 69 469 8 HOH HOH . D 4 HOH A 70 470 79 HOH HOH . D 4 HOH A 71 471 6 HOH HOH . D 4 HOH A 72 472 81 HOH HOH . D 4 HOH A 73 473 5 HOH HOH . D 4 HOH A 74 474 57 HOH HOH . D 4 HOH A 75 475 92 HOH HOH . D 4 HOH A 76 476 20 HOH HOH . D 4 HOH A 77 477 36 HOH HOH . D 4 HOH A 78 478 78 HOH HOH . D 4 HOH A 79 479 114 HOH HOH . D 4 HOH A 80 480 125 HOH HOH . D 4 HOH A 81 481 111 HOH HOH . D 4 HOH A 82 482 115 HOH HOH . D 4 HOH A 83 483 30 HOH HOH . D 4 HOH A 84 484 165 HOH HOH . D 4 HOH A 85 485 106 HOH HOH . D 4 HOH A 86 486 46 HOH HOH . D 4 HOH A 87 487 53 HOH HOH . D 4 HOH A 88 488 23 HOH HOH . D 4 HOH A 89 489 123 HOH HOH . D 4 HOH A 90 490 90 HOH HOH . D 4 HOH A 91 491 71 HOH HOH . D 4 HOH A 92 492 41 HOH HOH . D 4 HOH A 93 493 38 HOH HOH . D 4 HOH A 94 494 17 HOH HOH . D 4 HOH A 95 495 157 HOH HOH . D 4 HOH A 96 496 132 HOH HOH . D 4 HOH A 97 497 127 HOH HOH . D 4 HOH A 98 498 112 HOH HOH . D 4 HOH A 99 499 26 HOH HOH . D 4 HOH A 100 500 74 HOH HOH . D 4 HOH A 101 501 69 HOH HOH . D 4 HOH A 102 502 60 HOH HOH . D 4 HOH A 103 503 33 HOH HOH . D 4 HOH A 104 504 124 HOH HOH . D 4 HOH A 105 505 120 HOH HOH . D 4 HOH A 106 506 109 HOH HOH . D 4 HOH A 107 507 48 HOH HOH . D 4 HOH A 108 508 89 HOH HOH . D 4 HOH A 109 509 27 HOH HOH . D 4 HOH A 110 510 144 HOH HOH . D 4 HOH A 111 511 96 HOH HOH . D 4 HOH A 112 512 58 HOH HOH . D 4 HOH A 113 513 70 HOH HOH . D 4 HOH A 114 514 101 HOH HOH . D 4 HOH A 115 515 34 HOH HOH . D 4 HOH A 116 516 10 HOH HOH . D 4 HOH A 117 517 133 HOH HOH . D 4 HOH A 118 518 50 HOH HOH . D 4 HOH A 119 519 183 HOH HOH . D 4 HOH A 120 520 178 HOH HOH . D 4 HOH A 121 521 94 HOH HOH . D 4 HOH A 122 522 176 HOH HOH . D 4 HOH A 123 523 56 HOH HOH . D 4 HOH A 124 524 126 HOH HOH . D 4 HOH A 125 525 85 HOH HOH . D 4 HOH A 126 526 117 HOH HOH . D 4 HOH A 127 527 21 HOH HOH . D 4 HOH A 128 528 116 HOH HOH . D 4 HOH A 129 529 102 HOH HOH . D 4 HOH A 130 530 173 HOH HOH . D 4 HOH A 131 531 83 HOH HOH . D 4 HOH A 132 532 39 HOH HOH . D 4 HOH A 133 533 65 HOH HOH . D 4 HOH A 134 534 163 HOH HOH . D 4 HOH A 135 535 91 HOH HOH . D 4 HOH A 136 536 47 HOH HOH . D 4 HOH A 137 537 75 HOH HOH . D 4 HOH A 138 538 97 HOH HOH . D 4 HOH A 139 539 110 HOH HOH . D 4 HOH A 140 540 150 HOH HOH . D 4 HOH A 141 541 88 HOH HOH . D 4 HOH A 142 542 142 HOH HOH . D 4 HOH A 143 543 148 HOH HOH . D 4 HOH A 144 544 171 HOH HOH . D 4 HOH A 145 545 177 HOH HOH . D 4 HOH A 146 546 59 HOH HOH . D 4 HOH A 147 547 182 HOH HOH . D 4 HOH A 148 548 153 HOH HOH . D 4 HOH A 149 549 35 HOH HOH . D 4 HOH A 150 550 54 HOH HOH . D 4 HOH A 151 551 167 HOH HOH . D 4 HOH A 152 552 93 HOH HOH . D 4 HOH A 153 553 175 HOH HOH . D 4 HOH A 154 554 43 HOH HOH . D 4 HOH A 155 555 61 HOH HOH . D 4 HOH A 156 556 16 HOH HOH . D 4 HOH A 157 557 179 HOH HOH . D 4 HOH A 158 558 45 HOH HOH . D 4 HOH A 159 559 141 HOH HOH . D 4 HOH A 160 560 32 HOH HOH . D 4 HOH A 161 561 72 HOH HOH . D 4 HOH A 162 562 161 HOH HOH . D 4 HOH A 163 563 119 HOH HOH . D 4 HOH A 164 564 98 HOH HOH . D 4 HOH A 165 565 104 HOH HOH . D 4 HOH A 166 566 80 HOH HOH . D 4 HOH A 167 567 49 HOH HOH . D 4 HOH A 168 568 67 HOH HOH . D 4 HOH A 169 569 155 HOH HOH . D 4 HOH A 170 570 87 HOH HOH . D 4 HOH A 171 571 147 HOH HOH . D 4 HOH A 172 572 66 HOH HOH . D 4 HOH A 173 573 160 HOH HOH . D 4 HOH A 174 574 128 HOH HOH . D 4 HOH A 175 575 63 HOH HOH . D 4 HOH A 176 576 135 HOH HOH . D 4 HOH A 177 577 73 HOH HOH . D 4 HOH A 178 578 170 HOH HOH . D 4 HOH A 179 579 129 HOH HOH . D 4 HOH A 180 580 95 HOH HOH . D 4 HOH A 181 581 149 HOH HOH . D 4 HOH A 182 582 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE GXE . . . C 3 -4.933 -0.078 16.322 0.5 12.98 ? SE GXE 302 A 1 HETATM 2 C C GXE . . . C 3 -5.43 1.502 16.082 0.5 14.78 ? C GXE 302 A 1 HETATM 3 C C1 GXE . . . C 3 -6.42 2.159 16.821 0.5 14.42 ? C1 GXE 302 A 1 HETATM 4 C C2 GXE . . . C 3 -6.772 3.496 16.548 0.5 13.65 ? C2 GXE 302 A 1 HETATM 5 C C3 GXE . . . C 3 -6.262 4.237 15.489 0.5 13.73 ? C3 GXE 302 A 1 HETATM 6 C C4 GXE . . . C 3 -5.32 3.632 14.712 0.5 14.45 ? C4 GXE 302 A 1 HETATM 7 C C5 GXE . . . C 3 -4.926 2.314 15.02 0.5 15.03 ? C5 GXE 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #