data_6HXR
#
_model_server_result.job_id            1KbquLEf9fHcgpbIgwrdtg 
_model_server_result.datetime_utc      '2024-11-25 11:55:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6hxr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6HXR 
#
_exptl.entry_id    6HXR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              537.528 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6HXR 
_cell.length_a            148.064 
_cell.length_b            148.064 
_cell.length_c            99.73 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6HXR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1 
B,E 2 1 
C 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C24 H27 N9 O6' 
_chem_comp.formula_weight    537.528 
_chem_comp.id                UHB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 UHB doub 356 n y 
C01 C06 UHB sing 357 n y 
C02 C03 UHB sing 358 n y 
C03 C04 UHB doub 359 n y 
C04 C05 UHB sing 360 n y 
C04 N11 UHB sing 361 n n 
C05 C06 UHB doub 362 n y 
C05 C08 UHB sing 363 n n 
C06 C07 UHB sing 364 n n 
C07 N09 UHB sing 365 n n 
C07 O10 UHB doub 366 n n 
C08 N09 UHB sing 367 n n 
N11 C12 UHB sing 368 n n 
C12 O13 UHB doub 369 n n 
C12 C14 UHB sing 370 n n 
C14 N15 UHB sing 371 n n 
N15 C16 UHB sing 372 n n 
N15 C20 UHB sing 373 n n 
C16 C17 UHB sing 374 n n 
C17 N18 UHB sing 375 n n 
N18 C19 UHB sing 376 n n 
N18 C21 UHB sing 377 n n 
C19 C20 UHB sing 378 n n 
C21 C22 UHB sing 379 n n 
C21 O27 UHB doub 380 n n 
C22 C23 UHB sing 381 n n 
C22 O26 UHB sing 382 n n 
C23 C24 UHB sing 383 n n 
C23 O28 UHB sing 384 n n 
C24 C25 UHB sing 385 n n 
C24 O29 UHB sing 386 n n 
C25 O26 UHB sing 387 n n 
C25 N30 UHB sing 388 n n 
N30 C32 UHB sing 389 n y 
N30 C33 UHB sing 390 n y 
C31 C32 UHB doub 391 n y 
C31 N34 UHB sing 392 n y 
C31 C38 UHB sing 393 n y 
C32 N37 UHB sing 394 n y 
C33 N34 UHB doub 395 n y 
N35 C36 UHB sing 396 n y 
N35 C38 UHB doub 397 n y 
C36 N37 UHB doub 398 n y 
C38 N39 UHB sing 399 n n 
C01 H01 UHB sing 400 n n 
C02 H02 UHB sing 401 n n 
C03 H03 UHB sing 402 n n 
C08 H081 UHB sing 403 n n 
C08 H082 UHB sing 404 n n 
N09 HN09 UHB sing 405 n n 
C14 H14 UHB sing 406 n n 
C14 H14A UHB sing 407 n n 
C16 H16 UHB sing 408 n n 
C16 H16A UHB sing 409 n n 
C17 H17 UHB sing 410 n n 
C17 H17A UHB sing 411 n n 
C19 H19 UHB sing 412 n n 
C19 H19A UHB sing 413 n n 
C20 H20 UHB sing 414 n n 
C20 H20A UHB sing 415 n n 
C22 H22 UHB sing 416 n n 
C23 H23 UHB sing 417 n n 
C24 H24 UHB sing 418 n n 
C25 H25 UHB sing 419 n n 
O28 HO28 UHB sing 420 n n 
O29 HO29 UHB sing 421 n n 
C33 H33 UHB sing 422 n n 
C36 H36 UHB sing 423 n n 
N39 HN39 UHB sing 424 n n 
N39 HN3A UHB sing 425 n n 
N11 HN11 UHB sing 426 n n 
#
_atom_sites.entry_id                     6HXR 
_atom_sites.fract_transf_matrix[1][1]    0.006754 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 UHB A 1 301 1 UHB UHB . 
E 2 UHB B 1 301 2 UHB UHB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 UHB . . . D 2 167.083 108.42 96.012 1 69.27 ? C01 UHB 301 A 1 
HETATM 2 C C02 UHB . . . D 2 167.152 107.077 95.613 1 68.02 ? C02 UHB 301 A 1 
HETATM 3 C C03 UHB . . . D 2 168.027 106.144 96.199 1 69.81 ? C03 UHB 301 A 1 
HETATM 4 C C04 UHB . . . D 2 169.032 106.537 97.115 1 73.83 ? C04 UHB 301 A 1 
HETATM 5 C C05 UHB . . . D 2 168.997 107.923 97.552 1 71.69 ? C05 UHB 301 A 1 
HETATM 6 C C06 UHB . . . D 2 168.053 108.823 97.035 1 70.3 ? C06 UHB 301 A 1 
HETATM 7 C C07 UHB . . . D 2 168.236 110.034 97.625 1 65.88 ? C07 UHB 301 A 1 
HETATM 8 C C08 UHB . . . D 2 169.68 108.696 98.464 1 66.15 ? C08 UHB 301 A 1 
HETATM 9 N N09 UHB . . . D 2 169.181 110.01 98.471 1 64.68 ? N09 UHB 301 A 1 
HETATM 10 O O10 UHB . . . D 2 167.623 111.07 97.409 1 63.43 ? O10 UHB 301 A 1 
HETATM 11 N N11 UHB . . . D 2 169.889 105.537 97.52 1 73.51 ? N11 UHB 301 A 1 
HETATM 12 C C12 UHB . . . D 2 171.016 105.544 98.166 1 70.36 ? C12 UHB 301 A 1 
HETATM 13 O O13 UHB . . . D 2 171.7 106.538 98.276 1 69.53 ? O13 UHB 301 A 1 
HETATM 14 C C14 UHB . . . D 2 171.686 104.262 98.537 1 67.99 ? C14 UHB 301 A 1 
HETATM 15 N N15 UHB . . . D 2 172.691 104.293 99.71 1 65.36 ? N15 UHB 301 A 1 
HETATM 16 C C16 UHB . . . D 2 174.017 104.432 99.08 1 64.88 ? C16 UHB 301 A 1 
HETATM 17 C C17 UHB . . . D 2 175.155 104.607 99.974 1 62.47 ? C17 UHB 301 A 1 
HETATM 18 N N18 UHB . . . D 2 174.922 105.739 100.914 1 63.89 ? N18 UHB 301 A 1 
HETATM 19 C C19 UHB . . . D 2 173.699 105.677 101.709 1 60.25 ? C19 UHB 301 A 1 
HETATM 20 C C20 UHB . . . D 2 172.492 104.966 101.03 1 60.66 ? C20 UHB 301 A 1 
HETATM 21 C C21 UHB . . . D 2 175.87 106.756 100.958 1 68.22 ? C21 UHB 301 A 1 
HETATM 22 C C22 UHB . . . D 2 175.615 107.936 101.996 1 61.46 ? C22 UHB 301 A 1 
HETATM 23 C C23 UHB . . . D 2 174.562 108.778 101.549 1 55.57 ? C23 UHB 301 A 1 
HETATM 24 C C24 UHB . . . D 2 175.033 110.139 101.365 1 56.9 ? C24 UHB 301 A 1 
HETATM 25 C C25 UHB . . . D 2 176.271 110.071 102.124 1 60.65 ? C25 UHB 301 A 1 
HETATM 26 O O26 UHB . . . D 2 176.692 108.86 101.797 1 61.58 ? O26 UHB 301 A 1 
HETATM 27 O O27 UHB . . . D 2 176.964 106.792 100.167 1 73.12 ? O27 UHB 301 A 1 
HETATM 28 O O28 UHB . . . D 2 173.6 108.707 102.307 1 52.91 ? O28 UHB 301 A 1 
HETATM 29 O O29 UHB . . . D 2 174.06 111.169 101.56 1 55.81 ? O29 UHB 301 A 1 
HETATM 30 N N30 UHB . . . D 2 177.377 110.982 101.676 1 63.19 ? N30 UHB 301 A 1 
HETATM 31 C C31 UHB . . . D 2 178.974 112.398 101.995 1 59.59 ? C31 UHB 301 A 1 
HETATM 32 C C32 UHB . . . D 2 178.067 111.605 102.607 1 60.11 ? C32 UHB 301 A 1 
HETATM 33 C C33 UHB . . . D 2 177.855 111.364 100.501 1 61.72 ? C33 UHB 301 A 1 
HETATM 34 N N34 UHB . . . D 2 178.824 112.268 100.686 1 58.37 ? N34 UHB 301 A 1 
HETATM 35 N N35 UHB . . . D 2 179.612 113.077 104.102 1 58.51 ? N35 UHB 301 A 1 
HETATM 36 C C36 UHB . . . D 2 178.677 112.166 104.823 1 58.19 ? C36 UHB 301 A 1 
HETATM 37 N N37 UHB . . . D 2 177.88 111.455 103.933 1 56.09 ? N37 UHB 301 A 1 
HETATM 38 C C38 UHB . . . D 2 179.785 113.153 102.749 1 59.32 ? C38 UHB 301 A 1 
HETATM 39 N N39 UHB . . . D 2 180.707 114.017 102.211 1 57.98 ? N39 UHB 301 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#