data_6HYH # _model_server_result.job_id UC2nbDPto6sNCODhydSMYA _model_server_result.datetime_utc '2024-11-23 17:55:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 6HYH # _exptl.entry_id 6HYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HYH _cell.length_a 118.065 _cell.length_b 118.065 _cell.length_c 232.2 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -118.065 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 36 A GLU 37 1_555 H ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A OD1 ASP 87 A ASP 88 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 A OD2 ASP 111 A ASP 112 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc4 A OE2 GLU 125 A GLU 126 1_555 N ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc5 A OD2 ASP 161 A ASP 162 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc6 A OE1 GLU 221 A GLU 222 1_555 H ZN ZN . A ZN 406 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 A OE2 GLU 221 A GLU 222 1_555 H ZN ZN . A ZN 406 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc8 A ND1 HIS 243 A HIS 244 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 A OD1 ASP 244 A ASP 245 1_555 C ZN ZN . A ZN 401 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc10 A OE1 GLU 259 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc11 A OE2 GLU 259 A GLU 260 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc12 A OE2 GLU 290 A GLU 291 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc13 A NE2 HIS 314 A HIS 315 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc14 A NE2 HIS 315 A HIS 316 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc15 A NE2 HIS 316 A HIS 317 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc16 A NE2 HIS 317 A HIS 318 1_555 I ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc17 A ND1 HIS 317 A HIS 318 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc18 A NE2 HIS 318 A HIS 319 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc19 A NE2 HIS 319 A HIS 320 1_555 J ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc20 C ZN ZN . A ZN 401 1_555 R O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc21 C ZN ZN . A ZN 401 1_555 R O HOH . A HOH 503 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc22 C ZN ZN . A ZN 401 1_555 R O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc23 C ZN ZN . A ZN 401 1_555 R O HOH . A HOH 511 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc24 C ZN ZN . A ZN 401 1_555 R O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc25 D ZN ZN . A ZN 402 1_555 R O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc26 D ZN ZN . A ZN 402 1_555 B NE2 HIS 314 B HIS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc27 E ZN ZN . A ZN 403 1_555 R O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc28 E ZN ZN . A ZN 403 10_455 B ND1 HIS 318 B HIS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc29 G ZN ZN . A ZN 405 1_555 R O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc30 G ZN ZN . A ZN 405 1_555 R O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc31 H ZN ZN . A ZN 406 1_555 R O HOH . A HOH 508 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc32 H ZN ZN . A ZN 406 1_555 R O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc33 I ZN ZN . A ZN 407 1_555 S O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc34 J ZN ZN . A ZN 408 1_555 B OE1 GLU 125 B GLU 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc35 J ZN ZN . A ZN 408 1_555 S O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc36 R O HOH . A HOH 504 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc37 B ND1 HIS 243 B HIS 244 1_555 P ZN ZN . B ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc38 B OD1 ASP 244 B ASP 245 1_555 P ZN ZN . B ZN 405 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc39 B OE1 GLU 259 B GLU 260 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc40 B OE2 GLU 259 B GLU 260 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc41 B OE2 GLU 290 B GLU 291 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc42 B NE2 HIS 315 B HIS 316 1_555 O ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc43 B NE2 HIS 316 B HIS 317 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc44 B ND1 HIS 317 B HIS 318 1_555 N ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc45 B NE2 HIS 317 B HIS 318 1_555 O ZN ZN . B ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc46 B NE2 HIS 318 B HIS 319 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc47 B NE2 HIS 319 B HIS 320 1_555 N ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc48 L ZN ZN . B ZN 401 1_555 S O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc49 M ZN ZN . B ZN 402 1_555 S O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc50 N ZN ZN . B ZN 403 1_555 S O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc51 O ZN ZN . B ZN 404 1_555 S O HOH . B HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc52 P ZN ZN . B ZN 405 1_555 S O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc53 P ZN ZN . B ZN 405 1_555 S O HOH . B HOH 505 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HYH _atom_sites.fract_transf_matrix[1][1] 0.00847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 1 ZN ZN . D 2 ZN A 1 402 2 ZN ZN . E 2 ZN A 1 403 3 ZN ZN . F 2 ZN A 1 404 4 ZN ZN . G 2 ZN A 1 405 6 ZN ZN . H 2 ZN A 1 406 10 ZN ZN . I 2 ZN A 1 407 12 ZN ZN . J 2 ZN A 1 408 13 ZN ZN . K 3 GYE A 1 409 1 GYE XXX . L 2 ZN B 1 401 5 ZN ZN . M 2 ZN B 1 402 7 ZN ZN . N 2 ZN B 1 403 8 ZN ZN . O 2 ZN B 1 404 9 ZN ZN . P 2 ZN B 1 405 11 ZN ZN . Q 3 GYE B 1 406 2 GYE XXX . R 4 HOH A 1 501 13 HOH HOH . R 4 HOH A 2 502 11 HOH HOH . R 4 HOH A 3 503 26 HOH HOH . R 4 HOH A 4 504 21 HOH HOH . R 4 HOH A 5 505 25 HOH HOH . R 4 HOH A 6 506 7 HOH HOH . R 4 HOH A 7 507 14 HOH HOH . R 4 HOH A 8 508 15 HOH HOH . R 4 HOH A 9 509 3 HOH HOH . R 4 HOH A 10 510 6 HOH HOH . R 4 HOH A 11 511 10 HOH HOH . R 4 HOH A 12 512 8 HOH HOH . R 4 HOH A 13 513 20 HOH HOH . R 4 HOH A 14 514 4 HOH HOH . R 4 HOH A 15 515 2 HOH HOH . S 4 HOH B 1 501 1 HOH HOH . S 4 HOH B 2 502 16 HOH HOH . S 4 HOH B 3 503 23 HOH HOH . S 4 HOH B 4 504 27 HOH HOH . S 4 HOH B 5 505 19 HOH HOH . S 4 HOH B 6 506 22 HOH HOH . S 4 HOH B 7 507 24 HOH HOH . S 4 HOH B 8 508 17 HOH HOH . S 4 HOH B 9 509 12 HOH HOH . S 4 HOH B 10 510 9 HOH HOH . S 4 HOH B 11 511 18 HOH HOH . S 4 HOH B 12 512 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -57.142 _atom_site.Cartn_y 4.491 _atom_site.Cartn_z 18.361 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 114.44 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #