data_6HYV # _model_server_result.job_id Pq0edK7Yb2YEgttSEnpTXQ _model_server_result.datetime_utc '2024-11-04 22:38:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":409}' # _entry.id 6HYV # _exptl.entry_id 6HYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.22 _cell.angle_gamma 90 _cell.entry_id 6HYV _cell.length_a 180.81 _cell.length_b 132.38 _cell.length_c 159.65 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 P N N ? 2 Q N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 GA N N ? 2 HA N N ? 2 OA N N ? 2 PA N N ? 2 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 M NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 V NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 C O PRO 68 C PRO 68 1_555 EA NA NA . C NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc4 C O ILE 71 C ILE 71 1_555 EA NA NA . C NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc5 D O PRO 68 D PRO 68 1_555 MA NA NA . D NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc6 D O ILE 71 D ILE 71 1_555 MA NA NA . D NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc7 E O PRO 68 E PRO 68 1_555 UA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc8 E O ILE 71 E ILE 71 1_555 UA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 200 n n C1B O1B LMT sing 201 n n C1B O5B LMT sing 202 n n C1B H1B LMT sing 203 n n C2B C3B LMT sing 204 n n C2B O2B LMT sing 205 n n C2B H2B LMT sing 206 n n C3B C4B LMT sing 207 n n C3B O3B LMT sing 208 n n C3B H3B LMT sing 209 n n C4B C5B LMT sing 210 n n C4B O4' LMT sing 211 n n C4B H4B LMT sing 212 n n C5B C6B LMT sing 213 n n C5B O5B LMT sing 214 n n C5B H5B LMT sing 215 n n C6B O6B LMT sing 216 n n C6B "H6'2" LMT sing 217 n n C6B "H6'1" LMT sing 218 n n O1B C4' LMT sing 219 n n O2B H2O1 LMT sing 220 n n O3B H3O1 LMT sing 221 n n O4' H4O1 LMT sing 222 n n O6B H6B LMT sing 223 n n C1' C2' LMT sing 224 n n C1' O1' LMT sing 225 n n C1' O5' LMT sing 226 n n C1' H1' LMT sing 227 n n C2' C3' LMT sing 228 n n C2' O2' LMT sing 229 n n C2' H2' LMT sing 230 n n C3' C4' LMT sing 231 n n C3' O3' LMT sing 232 n n C3' H3' LMT sing 233 n n C4' C5' LMT sing 234 n n C4' H4' LMT sing 235 n n C5' C6' LMT sing 236 n n C5' O5' LMT sing 237 n n C5' H5' LMT sing 238 n n C6' O6' LMT sing 239 n n C6' H6D LMT sing 240 n n C6' H6E LMT sing 241 n n O1' C1 LMT sing 242 n n O2' H2O2 LMT sing 243 n n O3' H3O2 LMT sing 244 n n O6' H6' LMT sing 245 n n C1 C2 LMT sing 246 n n C1 H12 LMT sing 247 n n C1 H11 LMT sing 248 n n C2 C3 LMT sing 249 n n C2 H22 LMT sing 250 n n C2 H21 LMT sing 251 n n C3 C4 LMT sing 252 n n C3 H32 LMT sing 253 n n C3 H31 LMT sing 254 n n C4 C5 LMT sing 255 n n C4 H42 LMT sing 256 n n C4 H41 LMT sing 257 n n C5 C6 LMT sing 258 n n C5 H52 LMT sing 259 n n C5 H51 LMT sing 260 n n C6 C7 LMT sing 261 n n C6 H62 LMT sing 262 n n C6 H61 LMT sing 263 n n C7 C8 LMT sing 264 n n C7 H72 LMT sing 265 n n C7 H71 LMT sing 266 n n C8 C9 LMT sing 267 n n C8 H82 LMT sing 268 n n C8 H81 LMT sing 269 n n C9 C10 LMT sing 270 n n C9 H92 LMT sing 271 n n C9 H91 LMT sing 272 n n C10 C11 LMT sing 273 n n C10 H102 LMT sing 274 n n C10 H101 LMT sing 275 n n C11 C12 LMT sing 276 n n C11 H112 LMT sing 277 n n C11 H111 LMT sing 278 n n C12 H123 LMT sing 279 n n C12 H122 LMT sing 280 n n C12 H121 LMT sing 281 n n # _atom_sites.entry_id 6HYV _atom_sites.fract_transf_matrix[1][1] 0.005531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001198 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 401 320 LMT LMT . G 3 ACT A 1 402 401 ACT ACT . H 4 PLC A 1 403 402 PLC PLC . I 4 PLC A 1 404 403 PLC PLC . J 5 CL A 1 405 405 CL CL . K 5 CL A 1 406 406 CL CL . L 5 CL A 1 407 407 CL CL . M 6 NA A 1 408 408 NA NA . N 6 NA A 1 409 409 NA NA . O 3 ACT A 1 410 410 ACT ACT . P 2 LMT A 1 411 412 LMT LMT . Q 2 LMT B 1 401 320 LMT LMT . R 3 ACT B 1 402 401 ACT ACT . S 4 PLC B 1 403 402 PLC PLC . T 4 PLC B 1 404 403 PLC PLC . U 5 CL B 1 405 405 CL CL . V 6 NA B 1 406 406 NA NA . W 3 ACT B 1 407 407 ACT ACT . X 2 LMT B 1 408 408 LMT LMT . Y 2 LMT C 1 401 411 LMT LMT . Z 2 LMT C 1 402 320 LMT LMT . AA 3 ACT C 1 403 401 ACT ACT . BA 4 PLC C 1 404 402 PLC PLC . CA 4 PLC C 1 405 403 PLC PLC . DA 5 CL C 1 406 405 CL CL . EA 6 NA C 1 407 406 NA NA . FA 3 ACT C 1 408 407 ACT ACT . GA 2 LMT C 1 409 408 LMT LMT . HA 2 LMT D 1 401 320 LMT LMT . IA 3 ACT D 1 402 401 ACT ACT . JA 4 PLC D 1 403 402 PLC PLC . KA 4 PLC D 1 404 403 PLC PLC . LA 5 CL D 1 405 405 CL CL . MA 6 NA D 1 406 406 NA NA . NA 3 ACT D 1 407 407 ACT ACT . OA 2 LMT D 1 408 408 LMT LMT . PA 2 LMT E 1 401 320 LMT LMT . QA 3 ACT E 1 402 401 ACT ACT . RA 4 PLC E 1 403 402 PLC PLC . SA 4 PLC E 1 404 403 PLC PLC . TA 5 CL E 1 405 405 CL CL . UA 6 NA E 1 406 406 NA NA . VA 3 ACT E 1 407 407 ACT ACT . WA 2 LMT E 1 408 408 LMT LMT . XA 7 HOH A 1 501 45 HOH HOH . XA 7 HOH A 2 502 559 HOH HOH . XA 7 HOH A 3 503 414 HOH HOH . XA 7 HOH A 4 504 147 HOH HOH . XA 7 HOH A 5 505 180 HOH HOH . XA 7 HOH A 6 506 179 HOH HOH . XA 7 HOH A 7 507 168 HOH HOH . XA 7 HOH A 8 508 24 HOH HOH . XA 7 HOH A 9 509 49 HOH HOH . XA 7 HOH A 10 510 94 HOH HOH . XA 7 HOH A 11 511 115 HOH HOH . XA 7 HOH A 12 512 140 HOH HOH . XA 7 HOH A 13 513 92 HOH HOH . XA 7 HOH A 14 514 145 HOH HOH . XA 7 HOH A 15 515 579 HOH HOH . XA 7 HOH A 16 516 8 HOH HOH . XA 7 HOH A 17 517 116 HOH HOH . XA 7 HOH A 18 518 205 HOH HOH . XA 7 HOH A 19 519 501 HOH HOH . XA 7 HOH A 20 520 38 HOH HOH . XA 7 HOH A 21 521 171 HOH HOH . XA 7 HOH A 22 522 565 HOH HOH . XA 7 HOH A 23 523 503 HOH HOH . YA 7 HOH B 1 501 566 HOH HOH . YA 7 HOH B 2 502 117 HOH HOH . YA 7 HOH B 3 503 146 HOH HOH . YA 7 HOH B 4 504 504 HOH HOH . YA 7 HOH B 5 505 166 HOH HOH . YA 7 HOH B 6 506 20 HOH HOH . YA 7 HOH B 7 507 512 HOH HOH . YA 7 HOH B 8 508 560 HOH HOH . YA 7 HOH B 9 509 52 HOH HOH . YA 7 HOH B 10 510 528 HOH HOH . YA 7 HOH B 11 511 19 HOH HOH . YA 7 HOH B 12 512 111 HOH HOH . YA 7 HOH B 13 513 622 HOH HOH . YA 7 HOH B 14 514 97 HOH HOH . YA 7 HOH B 15 515 26 HOH HOH . YA 7 HOH B 16 516 33 HOH HOH . YA 7 HOH B 17 517 71 HOH HOH . YA 7 HOH B 18 518 194 HOH HOH . YA 7 HOH B 19 519 114 HOH HOH . YA 7 HOH B 20 520 412 HOH HOH . YA 7 HOH B 21 521 186 HOH HOH . YA 7 HOH B 22 522 197 HOH HOH . YA 7 HOH B 23 523 105 HOH HOH . ZA 7 HOH C 1 501 110 HOH HOH . ZA 7 HOH C 2 502 163 HOH HOH . ZA 7 HOH C 3 503 129 HOH HOH . ZA 7 HOH C 4 504 132 HOH HOH . ZA 7 HOH C 5 505 164 HOH HOH . ZA 7 HOH C 6 506 550 HOH HOH . ZA 7 HOH C 7 507 22 HOH HOH . ZA 7 HOH C 8 508 177 HOH HOH . ZA 7 HOH C 9 509 21 HOH HOH . ZA 7 HOH C 10 510 551 HOH HOH . ZA 7 HOH C 11 511 35 HOH HOH . ZA 7 HOH C 12 512 510 HOH HOH . ZA 7 HOH C 13 513 128 HOH HOH . ZA 7 HOH C 14 514 139 HOH HOH . ZA 7 HOH C 15 515 85 HOH HOH . ZA 7 HOH C 16 516 88 HOH HOH . ZA 7 HOH C 17 517 501 HOH HOH . AB 7 HOH D 1 501 120 HOH HOH . AB 7 HOH D 2 502 154 HOH HOH . AB 7 HOH D 3 503 32 HOH HOH . AB 7 HOH D 4 504 100 HOH HOH . AB 7 HOH D 5 505 11 HOH HOH . AB 7 HOH D 6 506 201 HOH HOH . AB 7 HOH D 7 507 91 HOH HOH . AB 7 HOH D 8 508 142 HOH HOH . AB 7 HOH D 9 509 526 HOH HOH . AB 7 HOH D 10 510 59 HOH HOH . AB 7 HOH D 11 511 17 HOH HOH . AB 7 HOH D 12 512 195 HOH HOH . AB 7 HOH D 13 513 559 HOH HOH . AB 7 HOH D 14 514 540 HOH HOH . AB 7 HOH D 15 515 192 HOH HOH . AB 7 HOH D 16 516 410 HOH HOH . AB 7 HOH D 17 517 93 HOH HOH . AB 7 HOH D 18 518 113 HOH HOH . AB 7 HOH D 19 519 58 HOH HOH . AB 7 HOH D 20 520 86 HOH HOH . AB 7 HOH D 21 521 37 HOH HOH . AB 7 HOH D 22 522 207 HOH HOH . AB 7 HOH D 23 523 98 HOH HOH . AB 7 HOH D 24 524 41 HOH HOH . AB 7 HOH D 25 525 51 HOH HOH . AB 7 HOH D 26 526 501 HOH HOH . AB 7 HOH D 27 527 3 HOH HOH . AB 7 HOH D 28 528 566 HOH HOH . AB 7 HOH D 29 529 40 HOH HOH . BB 7 HOH E 1 501 413 HOH HOH . BB 7 HOH E 2 502 155 HOH HOH . BB 7 HOH E 3 503 12 HOH HOH . BB 7 HOH E 4 504 134 HOH HOH . BB 7 HOH E 5 505 69 HOH HOH . BB 7 HOH E 6 506 1 HOH HOH . BB 7 HOH E 7 507 103 HOH HOH . BB 7 HOH E 8 508 18 HOH HOH . BB 7 HOH E 9 509 4 HOH HOH . BB 7 HOH E 10 510 193 HOH HOH . BB 7 HOH E 11 511 174 HOH HOH . BB 7 HOH E 12 512 29 HOH HOH . BB 7 HOH E 13 513 510 HOH HOH . BB 7 HOH E 14 514 144 HOH HOH . BB 7 HOH E 15 515 31 HOH HOH . BB 7 HOH E 16 516 560 HOH HOH . BB 7 HOH E 17 517 79 HOH HOH . BB 7 HOH E 18 518 62 HOH HOH . BB 7 HOH E 19 519 172 HOH HOH . BB 7 HOH E 20 520 577 HOH HOH . BB 7 HOH E 21 521 119 HOH HOH . BB 7 HOH E 22 522 206 HOH HOH . BB 7 HOH E 23 523 99 HOH HOH . BB 7 HOH E 24 524 42 HOH HOH . BB 7 HOH E 25 525 501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . GA 2 52.141 -32.292 35.101 1 42.46 ? C1 LMT 409 C 1 HETATM 2 C C2 LMT . . . GA 2 52.764 -31.481 36.223 1 40.24 ? C2 LMT 409 C 1 HETATM 3 C C3 LMT . . . GA 2 52.608 -32.067 37.623 1 34.07 ? C3 LMT 409 C 1 HETATM 4 C C4 LMT . . . GA 2 53.397 -31.34 38.713 1 30.75 ? C4 LMT 409 C 1 HETATM 5 C C5 LMT . . . GA 2 52.903 -31.639 40.128 1 28.24 ? C5 LMT 409 C 1 HETATM 6 C C6 LMT . . . GA 2 53.788 -31.166 41.266 1 26.79 ? C6 LMT 409 C 1 HETATM 7 C C7 LMT . . . GA 2 53.037 -30.887 42.559 1 28.16 ? C7 LMT 409 C 1 HETATM 8 C C8 LMT . . . GA 2 53.95 -30.616 43.746 1 30.01 ? C8 LMT 409 C 1 HETATM 9 C C9 LMT . . . GA 2 53.261 -30.031 44.978 1 31.48 ? C9 LMT 409 C 1 HETATM 10 C C10 LMT . . . GA 2 54.158 -29.972 46.208 1 32.12 ? C10 LMT 409 C 1 HETATM 11 C C11 LMT . . . GA 2 53.435 -29.674 47.505 1 32.46 ? C11 LMT 409 C 1 HETATM 12 C C12 LMT . . . GA 2 54.322 -29.696 48.711 1 31.96 ? C12 LMT 409 C 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #