data_6HYW # _model_server_result.job_id AfCK2YNe6z5L_thXPi9g0Q _model_server_result.datetime_utc '2024-11-23 17:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":405}' # _entry.id 6HYW # _exptl.entry_id 6HYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.25 _cell.angle_gamma 90 _cell.entry_id 6HYW _cell.length_a 183 _cell.length_b 132.24 _cell.length_c 161.48 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 U N N ? 5 BA N N ? 5 IA N N ? 5 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc3 B O PRO 68 B PRO 68 1_555 U NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc4 B O ILE 71 B ILE 71 1_555 U NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc5 C O PRO 68 C PRO 68 1_555 BA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc6 C O ILE 71 C ILE 71 1_555 BA NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc7 D O PRO 68 D PRO 68 1_555 IA NA NA . D NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? metalc ? metalc8 D O ILE 71 D ILE 71 1_555 IA NA NA . D NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc9 E O PRO 68 E PRO 68 1_555 PA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc10 E O ILE 71 E ILE 71 1_555 PA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HYW _atom_sites.fract_transf_matrix[1][1] 0.005464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001287 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 3 PLC A 1 403 403 PLC PLC . I 4 CL A 1 404 405 CL CL . J 4 CL A 1 405 406 CL CL . K 4 CL A 1 406 407 CL CL . L 5 NA A 1 407 408 NA NA . M 5 NA A 1 408 409 NA NA . N 2 ACT A 1 409 410 ACT ACT . O 6 LMT A 1 410 411 LMT LMT . P 6 LMT A 1 411 412 LMT LMT . Q 2 ACT B 1 401 401 ACT ACT . R 3 PLC B 1 402 402 PLC PLC . S 3 PLC B 1 403 403 PLC PLC . T 4 CL B 1 404 405 CL CL . U 5 NA B 1 405 406 NA NA . V 2 ACT B 1 406 407 ACT ACT . W 6 LMT B 1 407 408 LMT LMT . X 2 ACT B 1 408 401 ACT ACT . Y 3 PLC C 1 401 402 PLC PLC . Z 3 PLC C 1 402 403 PLC PLC . AA 4 CL C 1 403 405 CL CL . BA 5 NA C 1 404 406 NA NA . CA 2 ACT C 1 405 407 ACT ACT . DA 6 LMT C 1 406 408 LMT LMT . EA 2 ACT C 1 407 401 ACT ACT . FA 3 PLC D 1 401 402 PLC PLC . GA 3 PLC D 1 402 403 PLC PLC . HA 4 CL D 1 403 405 CL CL . IA 5 NA D 1 404 406 NA NA . JA 2 ACT D 1 405 407 ACT ACT . KA 6 LMT D 1 406 408 LMT LMT . LA 2 ACT D 1 407 401 ACT ACT . MA 3 PLC E 1 401 402 PLC PLC . NA 3 PLC E 1 402 403 PLC PLC . OA 4 CL E 1 403 405 CL CL . PA 5 NA E 1 404 406 NA NA . QA 2 ACT E 1 405 407 ACT ACT . RA 6 LMT E 1 406 408 LMT LMT . SA 7 HOH A 1 501 108 HOH HOH . SA 7 HOH A 2 502 168 HOH HOH . SA 7 HOH A 3 503 173 HOH HOH . SA 7 HOH A 4 504 180 HOH HOH . SA 7 HOH A 5 505 188 HOH HOH . SA 7 HOH A 6 506 23 HOH HOH . SA 7 HOH A 7 507 102 HOH HOH . SA 7 HOH A 8 508 80 HOH HOH . SA 7 HOH A 9 509 24 HOH HOH . SA 7 HOH A 10 510 62 HOH HOH . SA 7 HOH A 11 511 145 HOH HOH . SA 7 HOH A 12 512 156 HOH HOH . SA 7 HOH A 13 513 414 HOH HOH . SA 7 HOH A 14 514 179 HOH HOH . SA 7 HOH A 15 515 10 HOH HOH . SA 7 HOH A 16 516 92 HOH HOH . SA 7 HOH A 17 517 579 HOH HOH . SA 7 HOH A 18 518 8 HOH HOH . SA 7 HOH A 19 519 115 HOH HOH . SA 7 HOH A 20 520 171 HOH HOH . SA 7 HOH A 21 521 116 HOH HOH . SA 7 HOH A 22 522 38 HOH HOH . SA 7 HOH A 23 523 94 HOH HOH . SA 7 HOH A 24 524 49 HOH HOH . SA 7 HOH A 25 525 53 HOH HOH . SA 7 HOH A 26 526 203 HOH HOH . SA 7 HOH A 27 527 572 HOH HOH . SA 7 HOH A 28 528 565 HOH HOH . SA 7 HOH A 29 529 112 HOH HOH . SA 7 HOH A 30 530 45 HOH HOH . SA 7 HOH A 31 531 205 HOH HOH . SA 7 HOH A 32 532 501 HOH HOH . TA 7 HOH B 1 501 14 HOH HOH . TA 7 HOH B 2 502 162 HOH HOH . TA 7 HOH B 3 503 117 HOH HOH . TA 7 HOH B 4 504 566 HOH HOH . TA 7 HOH B 5 505 16 HOH HOH . TA 7 HOH B 6 506 184 HOH HOH . TA 7 HOH B 7 507 183 HOH HOH . TA 7 HOH B 8 508 166 HOH HOH . TA 7 HOH B 9 509 111 HOH HOH . TA 7 HOH B 10 510 90 HOH HOH . TA 7 HOH B 11 511 20 HOH HOH . TA 7 HOH B 12 512 19 HOH HOH . TA 7 HOH B 13 513 146 HOH HOH . TA 7 HOH B 14 514 528 HOH HOH . TA 7 HOH B 15 515 186 HOH HOH . TA 7 HOH B 16 516 559 HOH HOH . TA 7 HOH B 17 517 52 HOH HOH . TA 7 HOH B 18 518 197 HOH HOH . TA 7 HOH B 19 519 124 HOH HOH . TA 7 HOH B 20 520 560 HOH HOH . TA 7 HOH B 21 521 121 HOH HOH . TA 7 HOH B 22 522 143 HOH HOH . TA 7 HOH B 23 523 412 HOH HOH . TA 7 HOH B 24 524 13 HOH HOH . TA 7 HOH B 25 525 123 HOH HOH . TA 7 HOH B 26 526 97 HOH HOH . TA 7 HOH B 27 527 26 HOH HOH . TA 7 HOH B 28 528 28 HOH HOH . TA 7 HOH B 29 529 136 HOH HOH . TA 7 HOH B 30 530 77 HOH HOH . TA 7 HOH B 31 531 501 HOH HOH . TA 7 HOH B 32 532 512 HOH HOH . TA 7 HOH B 33 533 562 HOH HOH . TA 7 HOH B 34 534 105 HOH HOH . TA 7 HOH B 35 535 63 HOH HOH . TA 7 HOH B 36 536 66 HOH HOH . TA 7 HOH B 37 537 152 HOH HOH . TA 7 HOH B 38 538 50 HOH HOH . TA 7 HOH B 39 539 194 HOH HOH . UA 7 HOH C 1 501 110 HOH HOH . UA 7 HOH C 2 502 163 HOH HOH . UA 7 HOH C 3 503 72 HOH HOH . UA 7 HOH C 4 504 132 HOH HOH . UA 7 HOH C 5 505 125 HOH HOH . UA 7 HOH C 6 506 551 HOH HOH . UA 7 HOH C 7 507 550 HOH HOH . UA 7 HOH C 8 508 35 HOH HOH . UA 7 HOH C 9 509 128 HOH HOH . UA 7 HOH C 10 510 177 HOH HOH . UA 7 HOH C 11 511 70 HOH HOH . UA 7 HOH C 12 512 129 HOH HOH . UA 7 HOH C 13 513 21 HOH HOH . UA 7 HOH C 14 514 68 HOH HOH . UA 7 HOH C 15 515 521 HOH HOH . UA 7 HOH C 16 516 178 HOH HOH . UA 7 HOH C 17 517 2 HOH HOH . UA 7 HOH C 18 518 15 HOH HOH . UA 7 HOH C 19 519 549 HOH HOH . UA 7 HOH C 20 520 104 HOH HOH . UA 7 HOH C 21 521 95 HOH HOH . UA 7 HOH C 22 522 22 HOH HOH . UA 7 HOH C 23 523 34 HOH HOH . UA 7 HOH C 24 524 501 HOH HOH . UA 7 HOH C 25 525 88 HOH HOH . UA 7 HOH C 26 526 137 HOH HOH . UA 7 HOH C 27 527 139 HOH HOH . UA 7 HOH C 28 528 64 HOH HOH . UA 7 HOH C 29 529 175 HOH HOH . UA 7 HOH C 30 530 501 HOH HOH . VA 7 HOH D 1 501 120 HOH HOH . VA 7 HOH D 2 502 91 HOH HOH . VA 7 HOH D 3 503 526 HOH HOH . VA 7 HOH D 4 504 11 HOH HOH . VA 7 HOH D 5 505 130 HOH HOH . VA 7 HOH D 6 506 59 HOH HOH . VA 7 HOH D 7 507 100 HOH HOH . VA 7 HOH D 8 508 158 HOH HOH . VA 7 HOH D 9 509 195 HOH HOH . VA 7 HOH D 10 510 410 HOH HOH . VA 7 HOH D 11 511 17 HOH HOH . VA 7 HOH D 12 512 131 HOH HOH . VA 7 HOH D 13 513 182 HOH HOH . VA 7 HOH D 14 514 86 HOH HOH . VA 7 HOH D 15 515 192 HOH HOH . VA 7 HOH D 16 516 559 HOH HOH . VA 7 HOH D 17 517 539 HOH HOH . VA 7 HOH D 18 518 540 HOH HOH . VA 7 HOH D 19 519 93 HOH HOH . VA 7 HOH D 20 520 37 HOH HOH . VA 7 HOH D 21 521 142 HOH HOH . VA 7 HOH D 22 522 154 HOH HOH . VA 7 HOH D 23 523 113 HOH HOH . VA 7 HOH D 24 524 40 HOH HOH . VA 7 HOH D 25 525 44 HOH HOH . VA 7 HOH D 26 526 58 HOH HOH . VA 7 HOH D 27 527 41 HOH HOH . VA 7 HOH D 28 528 149 HOH HOH . VA 7 HOH D 29 529 51 HOH HOH . VA 7 HOH D 30 530 109 HOH HOH . VA 7 HOH D 31 531 32 HOH HOH . VA 7 HOH D 32 532 3 HOH HOH . VA 7 HOH D 33 533 135 HOH HOH . VA 7 HOH D 34 534 501 HOH HOH . WA 7 HOH E 1 501 6 HOH HOH . WA 7 HOH E 2 502 176 HOH HOH . WA 7 HOH E 3 503 18 HOH HOH . WA 7 HOH E 4 504 155 HOH HOH . WA 7 HOH E 5 505 144 HOH HOH . WA 7 HOH E 6 506 189 HOH HOH . WA 7 HOH E 7 507 103 HOH HOH . WA 7 HOH E 8 508 1 HOH HOH . WA 7 HOH E 9 509 174 HOH HOH . WA 7 HOH E 10 510 170 HOH HOH . WA 7 HOH E 11 511 413 HOH HOH . WA 7 HOH E 12 512 510 HOH HOH . WA 7 HOH E 13 513 190 HOH HOH . WA 7 HOH E 14 514 133 HOH HOH . WA 7 HOH E 15 515 29 HOH HOH . WA 7 HOH E 16 516 560 HOH HOH . WA 7 HOH E 17 517 12 HOH HOH . WA 7 HOH E 18 518 4 HOH HOH . WA 7 HOH E 19 519 69 HOH HOH . WA 7 HOH E 20 520 57 HOH HOH . WA 7 HOH E 21 521 65 HOH HOH . WA 7 HOH E 22 522 31 HOH HOH . WA 7 HOH E 23 523 167 HOH HOH . WA 7 HOH E 24 524 159 HOH HOH . WA 7 HOH E 25 525 99 HOH HOH . WA 7 HOH E 26 526 126 HOH HOH . WA 7 HOH E 27 527 411 HOH HOH . WA 7 HOH E 28 528 119 HOH HOH . WA 7 HOH E 29 529 207 HOH HOH . WA 7 HOH E 30 530 127 HOH HOH . WA 7 HOH E 31 531 206 HOH HOH . WA 7 HOH E 32 532 42 HOH HOH . WA 7 HOH E 33 533 36 HOH HOH . WA 7 HOH E 34 534 503 HOH HOH . WA 7 HOH E 35 535 27 HOH HOH . WA 7 HOH E 36 536 187 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 5 _atom_site.Cartn_x 17.25 _atom_site.Cartn_y -25.809 _atom_site.Cartn_z 2.631 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.66 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #