data_6HZ1 # _model_server_result.job_id 9q_c0aYEDdQYCDwj5k8vpg _model_server_result.datetime_utc '2024-11-05 09:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":408}' # _entry.id 6HZ1 # _exptl.entry_id 6HZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.41 _cell.angle_gamma 90 _cell.entry_id 6HZ1 _cell.length_a 180.9 _cell.length_b 132.95 _cell.length_c 160.06 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N ? 5 W N N ? 5 EA N N ? 5 MA N N ? 5 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 W NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 C O ILE 71 C ILE 71 1_555 EA NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc4 D O ILE 71 D ILE 71 1_555 MA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc5 E O ILE 71 E ILE 71 1_555 VA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6HZ1 _atom_sites.fract_transf_matrix[1][1] 0.005528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001216 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 401 ACT ACT . G 3 PLC A 1 402 402 PLC PLC . H 3 PLC A 1 403 404 PLC PLC . I 4 CL A 1 404 405 CL CL . J 4 CL A 1 405 406 CL CL . K 4 CL A 1 406 407 CL CL . L 5 NA A 1 407 408 NA NA . M 5 NA A 1 408 409 NA NA . N 2 ACT A 1 409 410 ACT ACT . O 6 LMT A 1 410 411 LMT LMT . P 6 LMT A 1 411 412 LMT LMT . Q 3 PLC A 1 412 403 PLC PLC . R 3 PLC B 1 401 403 PLC PLC . S 2 ACT B 1 402 401 ACT ACT . T 3 PLC B 1 403 402 PLC PLC . U 3 PLC B 1 404 404 PLC PLC . V 4 CL B 1 405 405 CL CL . W 5 NA B 1 406 406 NA NA . X 2 ACT B 1 407 407 ACT ACT . Y 6 LMT B 1 408 408 LMT LMT . Z 2 ACT B 1 409 401 ACT ACT . AA 3 PLC C 1 401 403 PLC PLC . BA 3 PLC C 1 402 402 PLC PLC . CA 3 PLC C 1 403 404 PLC PLC . DA 4 CL C 1 404 405 CL CL . EA 5 NA C 1 405 406 NA NA . FA 2 ACT C 1 406 407 ACT ACT . GA 6 LMT C 1 407 408 LMT LMT . HA 2 ACT C 1 408 401 ACT ACT . IA 3 PLC D 1 401 403 PLC PLC . JA 3 PLC D 1 402 402 PLC PLC . KA 3 PLC D 1 403 404 PLC PLC . LA 4 CL D 1 404 405 CL CL . MA 5 NA D 1 405 406 NA NA . NA 2 ACT D 1 406 407 ACT ACT . OA 6 LMT D 1 407 408 LMT LMT . PA 6 LMT D 1 408 408 LMT LMT . QA 3 PLC E 1 401 403 PLC PLC . RA 2 ACT E 1 402 401 ACT ACT . SA 3 PLC E 1 403 402 PLC PLC . TA 3 PLC E 1 404 404 PLC PLC . UA 4 CL E 1 405 405 CL CL . VA 5 NA E 1 406 406 NA NA . WA 2 ACT E 1 407 407 ACT ACT . XA 7 HOH A 1 501 525 HOH HOH . XA 7 HOH A 2 502 527 HOH HOH . XA 7 HOH A 3 503 562 HOH HOH . XA 7 HOH A 4 504 523 HOH HOH . XA 7 HOH A 5 505 520 HOH HOH . XA 7 HOH A 6 506 534 HOH HOH . XA 7 HOH A 7 507 531 HOH HOH . XA 7 HOH A 8 508 530 HOH HOH . XA 7 HOH A 9 509 552 HOH HOH . XA 7 HOH A 10 510 536 HOH HOH . XA 7 HOH A 11 511 563 HOH HOH . XA 7 HOH A 12 512 584 HOH HOH . XA 7 HOH A 13 513 521 HOH HOH . XA 7 HOH A 14 514 557 HOH HOH . XA 7 HOH A 15 515 564 HOH HOH . XA 7 HOH A 16 516 553 HOH HOH . XA 7 HOH A 17 517 546 HOH HOH . XA 7 HOH A 18 518 556 HOH HOH . XA 7 HOH A 19 519 587 HOH HOH . XA 7 HOH A 20 520 583 HOH HOH . XA 7 HOH A 21 521 539 HOH HOH . XA 7 HOH A 22 522 535 HOH HOH . XA 7 HOH A 23 523 537 HOH HOH . XA 7 HOH A 24 524 573 HOH HOH . XA 7 HOH A 25 525 589 HOH HOH . XA 7 HOH A 26 526 544 HOH HOH . XA 7 HOH A 27 527 572 HOH HOH . XA 7 HOH A 28 528 522 HOH HOH . XA 7 HOH A 29 529 616 HOH HOH . XA 7 HOH A 30 530 545 HOH HOH . XA 7 HOH A 31 531 574 HOH HOH . XA 7 HOH A 32 532 579 HOH HOH . XA 7 HOH A 33 533 602 HOH HOH . XA 7 HOH A 34 534 610 HOH HOH . XA 7 HOH A 35 535 565 HOH HOH . XA 7 HOH A 36 536 533 HOH HOH . XA 7 HOH A 37 537 597 HOH HOH . XA 7 HOH A 38 538 503 HOH HOH . XA 7 HOH A 39 539 615 HOH HOH . XA 7 HOH A 40 540 562 HOH HOH . XA 7 HOH A 41 541 608 HOH HOH . XA 7 HOH A 42 542 590 HOH HOH . YA 7 HOH B 1 501 526 HOH HOH . YA 7 HOH B 2 502 521 HOH HOH . YA 7 HOH B 3 503 576 HOH HOH . YA 7 HOH B 4 504 539 HOH HOH . YA 7 HOH B 5 505 569 HOH HOH . YA 7 HOH B 6 506 551 HOH HOH . YA 7 HOH B 7 507 527 HOH HOH . YA 7 HOH B 8 508 619 HOH HOH . YA 7 HOH B 9 509 535 HOH HOH . YA 7 HOH B 10 510 564 HOH HOH . YA 7 HOH B 11 511 538 HOH HOH . YA 7 HOH B 12 512 577 HOH HOH . YA 7 HOH B 13 513 553 HOH HOH . YA 7 HOH B 14 514 552 HOH HOH . YA 7 HOH B 15 515 547 HOH HOH . YA 7 HOH B 16 516 581 HOH HOH . YA 7 HOH B 17 517 557 HOH HOH . YA 7 HOH B 18 518 609 HOH HOH . YA 7 HOH B 19 519 566 HOH HOH . YA 7 HOH B 20 520 559 HOH HOH . YA 7 HOH B 21 521 513 HOH HOH . YA 7 HOH B 22 522 533 HOH HOH . YA 7 HOH B 23 523 546 HOH HOH . YA 7 HOH B 24 524 575 HOH HOH . YA 7 HOH B 25 525 511 HOH HOH . YA 7 HOH B 26 526 611 HOH HOH . YA 7 HOH B 27 527 556 HOH HOH . YA 7 HOH B 28 528 534 HOH HOH . YA 7 HOH B 29 529 563 HOH HOH . YA 7 HOH B 30 530 528 HOH HOH . YA 7 HOH B 31 531 548 HOH HOH . YA 7 HOH B 32 532 609 HOH HOH . YA 7 HOH B 33 533 621 HOH HOH . YA 7 HOH B 34 534 578 HOH HOH . YA 7 HOH B 35 535 559 HOH HOH . YA 7 HOH B 36 536 584 HOH HOH . YA 7 HOH B 37 537 550 HOH HOH . YA 7 HOH B 38 538 560 HOH HOH . YA 7 HOH B 39 539 550 HOH HOH . YA 7 HOH B 40 540 542 HOH HOH . YA 7 HOH B 41 541 540 HOH HOH . YA 7 HOH B 42 542 558 HOH HOH . YA 7 HOH B 43 543 583 HOH HOH . YA 7 HOH B 44 544 555 HOH HOH . YA 7 HOH B 45 545 501 HOH HOH . YA 7 HOH B 46 546 512 HOH HOH . YA 7 HOH B 47 547 597 HOH HOH . YA 7 HOH B 48 548 610 HOH HOH . YA 7 HOH B 49 549 599 HOH HOH . YA 7 HOH B 50 550 593 HOH HOH . YA 7 HOH B 51 551 592 HOH HOH . ZA 7 HOH C 1 501 506 HOH HOH . ZA 7 HOH C 2 502 518 HOH HOH . ZA 7 HOH C 3 503 524 HOH HOH . ZA 7 HOH C 4 504 530 HOH HOH . ZA 7 HOH C 5 505 558 HOH HOH . ZA 7 HOH C 6 506 516 HOH HOH . ZA 7 HOH C 7 507 564 HOH HOH . ZA 7 HOH C 8 508 570 HOH HOH . ZA 7 HOH C 9 509 542 HOH HOH . ZA 7 HOH C 10 510 562 HOH HOH . ZA 7 HOH C 11 511 589 HOH HOH . ZA 7 HOH C 12 512 510 HOH HOH . ZA 7 HOH C 13 513 523 HOH HOH . ZA 7 HOH C 14 514 555 HOH HOH . ZA 7 HOH C 15 515 551 HOH HOH . ZA 7 HOH C 16 516 538 HOH HOH . ZA 7 HOH C 17 517 541 HOH HOH . ZA 7 HOH C 18 518 552 HOH HOH . ZA 7 HOH C 19 519 544 HOH HOH . ZA 7 HOH C 20 520 593 HOH HOH . ZA 7 HOH C 21 521 602 HOH HOH . ZA 7 HOH C 22 522 515 HOH HOH . ZA 7 HOH C 23 523 605 HOH HOH . ZA 7 HOH C 24 524 557 HOH HOH . ZA 7 HOH C 25 525 568 HOH HOH . ZA 7 HOH C 26 526 565 HOH HOH . ZA 7 HOH C 27 527 550 HOH HOH . ZA 7 HOH C 28 528 543 HOH HOH . ZA 7 HOH C 29 529 579 HOH HOH . ZA 7 HOH C 30 530 526 HOH HOH . ZA 7 HOH C 31 531 531 HOH HOH . ZA 7 HOH C 32 532 592 HOH HOH . ZA 7 HOH C 33 533 547 HOH HOH . ZA 7 HOH C 34 534 521 HOH HOH . ZA 7 HOH C 35 535 600 HOH HOH . ZA 7 HOH C 36 536 549 HOH HOH . ZA 7 HOH C 37 537 548 HOH HOH . ZA 7 HOH C 38 538 501 HOH HOH . ZA 7 HOH C 39 539 572 HOH HOH . ZA 7 HOH C 40 540 604 HOH HOH . ZA 7 HOH C 41 541 546 HOH HOH . ZA 7 HOH C 42 542 532 HOH HOH . ZA 7 HOH C 43 543 515 HOH HOH . ZA 7 HOH C 44 544 606 HOH HOH . ZA 7 HOH C 45 545 509 HOH HOH . ZA 7 HOH C 46 546 580 HOH HOH . ZA 7 HOH C 47 547 580 HOH HOH . ZA 7 HOH C 48 548 598 HOH HOH . ZA 7 HOH C 49 549 534 HOH HOH . ZA 7 HOH C 50 550 561 HOH HOH . AB 7 HOH D 1 501 554 HOH HOH . AB 7 HOH D 2 502 576 HOH HOH . AB 7 HOH D 3 503 507 HOH HOH . AB 7 HOH D 4 504 520 HOH HOH . AB 7 HOH D 5 505 544 HOH HOH . AB 7 HOH D 6 506 565 HOH HOH . AB 7 HOH D 7 507 546 HOH HOH . AB 7 HOH D 8 508 570 HOH HOH . AB 7 HOH D 9 509 573 HOH HOH . AB 7 HOH D 10 510 521 HOH HOH . AB 7 HOH D 11 511 575 HOH HOH . AB 7 HOH D 12 512 512 HOH HOH . AB 7 HOH D 13 513 558 HOH HOH . AB 7 HOH D 14 514 555 HOH HOH . AB 7 HOH D 15 515 522 HOH HOH . AB 7 HOH D 16 516 568 HOH HOH . AB 7 HOH D 17 517 533 HOH HOH . AB 7 HOH D 18 518 541 HOH HOH . AB 7 HOH D 19 519 563 HOH HOH . AB 7 HOH D 20 520 523 HOH HOH . AB 7 HOH D 21 521 545 HOH HOH . AB 7 HOH D 22 522 528 HOH HOH . AB 7 HOH D 23 523 547 HOH HOH . AB 7 HOH D 24 524 583 HOH HOH . AB 7 HOH D 25 525 581 HOH HOH . AB 7 HOH D 26 526 602 HOH HOH . AB 7 HOH D 27 527 526 HOH HOH . AB 7 HOH D 28 528 550 HOH HOH . AB 7 HOH D 29 529 551 HOH HOH . AB 7 HOH D 30 530 524 HOH HOH . AB 7 HOH D 31 531 516 HOH HOH . AB 7 HOH D 32 532 540 HOH HOH . AB 7 HOH D 33 533 603 HOH HOH . AB 7 HOH D 34 534 539 HOH HOH . AB 7 HOH D 35 535 567 HOH HOH . AB 7 HOH D 36 536 532 HOH HOH . AB 7 HOH D 37 537 589 HOH HOH . AB 7 HOH D 38 538 569 HOH HOH . AB 7 HOH D 39 539 517 HOH HOH . AB 7 HOH D 40 540 501 HOH HOH . AB 7 HOH D 41 541 585 HOH HOH . AB 7 HOH D 42 542 542 HOH HOH . AB 7 HOH D 43 543 503 HOH HOH . AB 7 HOH D 44 544 513 HOH HOH . AB 7 HOH D 45 545 597 HOH HOH . BB 7 HOH E 1 501 568 HOH HOH . BB 7 HOH E 2 502 515 HOH HOH . BB 7 HOH E 3 503 561 HOH HOH . BB 7 HOH E 4 504 552 HOH HOH . BB 7 HOH E 5 505 574 HOH HOH . BB 7 HOH E 6 506 532 HOH HOH . BB 7 HOH E 7 507 588 HOH HOH . BB 7 HOH E 8 508 535 HOH HOH . BB 7 HOH E 9 509 513 HOH HOH . BB 7 HOH E 10 510 553 HOH HOH . BB 7 HOH E 11 511 527 HOH HOH . BB 7 HOH E 12 512 526 HOH HOH . BB 7 HOH E 13 513 558 HOH HOH . BB 7 HOH E 14 514 549 HOH HOH . BB 7 HOH E 15 515 538 HOH HOH . BB 7 HOH E 16 516 573 HOH HOH . BB 7 HOH E 17 517 525 HOH HOH . BB 7 HOH E 18 518 551 HOH HOH . BB 7 HOH E 19 519 517 HOH HOH . BB 7 HOH E 20 520 531 HOH HOH . BB 7 HOH E 21 521 572 HOH HOH . BB 7 HOH E 22 522 580 HOH HOH . BB 7 HOH E 23 523 567 HOH HOH . BB 7 HOH E 24 524 555 HOH HOH . BB 7 HOH E 25 525 586 HOH HOH . BB 7 HOH E 26 526 543 HOH HOH . BB 7 HOH E 27 527 536 HOH HOH . BB 7 HOH E 28 528 571 HOH HOH . BB 7 HOH E 29 529 537 HOH HOH . BB 7 HOH E 30 530 562 HOH HOH . BB 7 HOH E 31 531 566 HOH HOH . BB 7 HOH E 32 532 522 HOH HOH . BB 7 HOH E 33 533 514 HOH HOH . BB 7 HOH E 34 534 581 HOH HOH . BB 7 HOH E 35 535 501 HOH HOH . BB 7 HOH E 36 536 544 HOH HOH . BB 7 HOH E 37 537 595 HOH HOH . BB 7 HOH E 38 538 590 HOH HOH . BB 7 HOH E 39 539 539 HOH HOH . BB 7 HOH E 40 540 554 HOH HOH . BB 7 HOH E 41 541 557 HOH HOH . BB 7 HOH E 42 542 585 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 5 _atom_site.Cartn_x 64.364 _atom_site.Cartn_y -26.645 _atom_site.Cartn_z 61.342 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.08 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 408 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #