data_6HZ7 # _model_server_result.job_id KFNvE8_basGccuqzgr7g4A _model_server_result.datetime_utc '2025-03-06 08:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1001}' # _entry.id 6HZ7 # _exptl.entry_id 6HZ7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6HZ7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 O N N ? 3 Q N N ? 3 S N N ? 3 X N N ? 3 Z N N ? 3 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 47 A THR 208 1_555 P MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 O O3G GNP . A GNP 1001 1_555 P MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc3 O O1B GNP . A GNP 1001 1_555 P MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc4 B OG1 THR 47 B THR 208 1_555 R MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc5 Q O3G GNP . B GNP 1001 1_555 R MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc6 Q O2B GNP . B GNP 1001 1_555 R MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc7 C OG1 THR 47 C THR 208 1_555 T MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 S O3G GNP . C GNP 1001 1_555 T MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc9 S O2B GNP . C GNP 1001 1_555 T MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc10 S O2A GNP . C GNP 1001 1_555 T MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 H OG1 THR 47 G THR 208 1_555 Y MG MG . G MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc12 X O3G GNP . G GNP 1001 1_555 Y MG MG . G MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc13 X O1B GNP . G GNP 1001 1_555 Y MG MG . G MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc14 I OG1 THR 47 H THR 208 1_555 AA MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc15 Z O3G GNP . H GNP 1001 1_555 AA MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc16 Z O2B GNP . H GNP 1001 1_555 AA MG MG . H MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc17 J OG1 THR 47 I THR 208 1_555 CA MG MG . I MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc18 BA O3G GNP . I GNP 1001 1_555 CA MG MG . I MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc19 BA O2B GNP . I GNP 1001 1_555 CA MG MG . I MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc20 BA O2A GNP . I GNP 1001 1_555 CA MG MG . I MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 174 n n PG O2G GNP sing 175 n n PG O3G GNP sing 176 n n PG N3B GNP sing 177 n n O2G HOG2 GNP sing 178 n n O3G HOG3 GNP sing 179 n n N3B PB GNP sing 180 n n N3B HNB3 GNP sing 181 n n PB O1B GNP doub 182 n n PB O2B GNP sing 183 n n PB O3A GNP sing 184 n n O2B HOB2 GNP sing 185 n n O3A PA GNP sing 186 n n PA O1A GNP doub 187 n n PA O2A GNP sing 188 n n PA O5' GNP sing 189 n n O2A HOA2 GNP sing 190 n n O5' C5' GNP sing 191 n n C5' C4' GNP sing 192 n n C5' "H5'2" GNP sing 193 n n C5' "H5'1" GNP sing 194 n n C4' O4' GNP sing 195 n n C4' C3' GNP sing 196 n n C4' H4' GNP sing 197 n n O4' C1' GNP sing 198 n n C3' O3' GNP sing 199 n n C3' C2' GNP sing 200 n n C3' H3' GNP sing 201 n n O3' HO3' GNP sing 202 n n C2' O2' GNP sing 203 n n C2' C1' GNP sing 204 n n C2' H2' GNP sing 205 n n O2' HO2' GNP sing 206 n n C1' N9 GNP sing 207 n n C1' H1' GNP sing 208 n n N9 C8 GNP sing 209 n y N9 C4 GNP sing 210 n y C8 N7 GNP doub 211 n y C8 H8 GNP sing 212 n n N7 C5 GNP sing 213 n y C5 C6 GNP sing 214 n y C5 C4 GNP doub 215 n y C6 O6 GNP doub 216 n n C6 N1 GNP sing 217 n y N1 C2 GNP sing 218 n y N1 HN1 GNP sing 219 n n C2 N2 GNP sing 220 n n C2 N3 GNP doub 221 n y N2 HN21 GNP sing 222 n n N2 HN22 GNP sing 223 n n N3 C4 GNP sing 224 n y # _atom_sites.entry_id 6HZ7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 3 GNP A 1 1001 1001 GNP GNP . P 4 MG A 1 1002 1002 MG MG . Q 3 GNP B 1 1001 1001 GNP GNP . R 4 MG B 1 1002 1002 MG MG . S 3 GNP C 1 1001 1001 GNP GNP . T 4 MG C 1 1002 1002 MG MG . U 5 GDP D 1 1001 1001 GDP GDP . V 5 GDP E 1 1001 1001 GDP GDP . W 5 GDP F 1 1001 1001 GDP GDP . X 3 GNP G 1 1001 1001 GNP GNP . Y 4 MG G 1 1002 1002 MG MG . Z 3 GNP H 1 1001 1001 GNP GNP . AA 4 MG H 1 1002 1002 MG MG . BA 3 GNP I 1 1001 1001 GNP GNP . CA 4 MG I 1 1002 1002 MG MG . DA 5 GDP J 1 1001 1001 GDP GDP . EA 5 GDP K 1 1001 1001 GDP GDP . FA 5 GDP L 1 1001 1001 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . O 3 93.023 96.557 107.129 1 109.92 ? PG GNP 1001 A 1 HETATM 2 O O1G GNP . . . O 3 92.422 97.78 106.566 1 109.92 ? O1G GNP 1001 A 1 HETATM 3 O O2G GNP . . . O 3 94.131 96.929 108.021 1 109.92 ? O2G GNP 1001 A 1 HETATM 4 O O3G GNP . . . O 3 92.028 95.79 107.906 1 109.92 ? O3G GNP 1001 A 1 HETATM 5 N N3B GNP . . . O 3 93.527 95.681 105.944 1 109.92 ? N3B GNP 1001 A 1 HETATM 6 P PB GNP . . . O 3 94.339 94.406 106.221 1 109.92 ? PB GNP 1001 A 1 HETATM 7 O O1B GNP . . . O 3 93.459 93.371 106.796 1 109.92 ? O1B GNP 1001 A 1 HETATM 8 O O2B GNP . . . O 3 95.477 94.684 107.116 1 109.92 ? O2B GNP 1001 A 1 HETATM 9 O O3A GNP . . . O 3 94.827 93.991 104.756 1 109.92 ? O3A GNP 1001 A 1 HETATM 10 P PA GNP . . . O 3 94.249 92.606 104.219 1 109.92 ? PA GNP 1001 A 1 HETATM 11 O O1A GNP . . . O 3 92.779 92.623 104.353 1 109.92 ? O1A GNP 1001 A 1 HETATM 12 O O2A GNP . . . O 3 94.791 91.507 105.046 1 109.92 ? O2A GNP 1001 A 1 HETATM 13 O O5' GNP . . . O 3 94.619 92.37 102.672 1 109.92 ? O5' GNP 1001 A 1 HETATM 14 C C5' GNP . . . O 3 93.808 93.004 101.679 1 109.92 ? C5' GNP 1001 A 1 HETATM 15 C C4' GNP . . . O 3 94.092 92.507 100.255 1 109.92 ? C4' GNP 1001 A 1 HETATM 16 O O4' GNP . . . O 3 95.558 92.493 100.137 1 109.92 ? O4' GNP 1001 A 1 HETATM 17 C C3' GNP . . . O 3 93.651 91.073 100 1 109.92 ? C3' GNP 1001 A 1 HETATM 18 O O3' GNP . . . O 3 93.356 90.888 98.606 1 109.92 ? O3' GNP 1001 A 1 HETATM 19 C C2' GNP . . . O 3 94.907 90.336 100.354 1 109.92 ? C2' GNP 1001 A 1 HETATM 20 O O2' GNP . . . O 3 94.894 89.005 99.823 1 109.92 ? O2' GNP 1001 A 1 HETATM 21 C C1' GNP . . . O 3 95.895 91.193 99.614 1 109.92 ? C1' GNP 1001 A 1 HETATM 22 N N9 GNP . . . O 3 97.261 90.787 99.94 1 109.92 ? N9 GNP 1001 A 1 HETATM 23 C C8 GNP . . . O 3 97.957 91.26 100.961 1 109.92 ? C8 GNP 1001 A 1 HETATM 24 N N7 GNP . . . O 3 99.144 90.663 100.958 1 109.92 ? N7 GNP 1001 A 1 HETATM 25 C C5 GNP . . . O 3 99.167 89.801 99.947 1 109.92 ? C5 GNP 1001 A 1 HETATM 26 C C6 GNP . . . O 3 100.112 88.965 99.529 1 109.92 ? C6 GNP 1001 A 1 HETATM 27 O O6 GNP . . . O 3 101.195 88.895 100.108 1 109.92 ? O6 GNP 1001 A 1 HETATM 28 N N1 GNP . . . O 3 99.867 88.159 98.419 1 109.92 ? N1 GNP 1001 A 1 HETATM 29 C C2 GNP . . . O 3 98.63 88.258 97.782 1 109.92 ? C2 GNP 1001 A 1 HETATM 30 N N2 GNP . . . O 3 98.348 87.511 96.723 1 109.92 ? N2 GNP 1001 A 1 HETATM 31 N N3 GNP . . . O 3 97.721 89.116 98.251 1 109.92 ? N3 GNP 1001 A 1 HETATM 32 C C4 GNP . . . O 3 97.996 89.879 99.315 1 109.92 ? C4 GNP 1001 A 1 HETATM 33 H HNB3 GNP . . . O 3 93.28 95.911 105.011 1 109.92 ? HNB3 GNP 1001 A 1 HETATM 34 H "H5'2" GNP . . . O 3 94.014 94.069 101.735 1 109.92 ? "H5'2" GNP 1001 A 1 HETATM 35 H "H5'1" GNP . . . O 3 92.758 92.822 101.893 1 109.92 ? "H5'1" GNP 1001 A 1 HETATM 36 H H4' GNP . . . O 3 93.572 93.152 99.555 1 109.92 ? H4' GNP 1001 A 1 HETATM 37 H H3' GNP . . . O 3 92.797 90.784 100.582 1 109.92 ? H3' GNP 1001 A 1 HETATM 38 H HO3' GNP . . . O 3 93.153 89.927 98.432 1 109.92 ? HO3' GNP 1001 A 1 HETATM 39 H H2' GNP . . . O 3 95.093 90.388 101.405 1 109.92 ? H2' GNP 1001 A 1 HETATM 40 H HO2' GNP . . . O 3 94.169 88.478 100.262 1 109.92 ? HO2' GNP 1001 A 1 HETATM 41 H H1' GNP . . . O 3 95.725 91.155 98.547 1 109.92 ? H1' GNP 1001 A 1 HETATM 42 H H8 GNP . . . O 3 97.623 92.027 101.655 1 109.92 ? H8 GNP 1001 A 1 HETATM 43 H HN1 GNP . . . O 3 100.565 87.524 98.09 1 109.92 ? HN1 GNP 1001 A 1 HETATM 44 H HN21 GNP . . . O 3 99.023 86.867 96.368 1 109.92 ? HN21 GNP 1001 A 1 HETATM 45 H HN22 GNP . . . O 3 97.454 87.596 96.284 1 109.92 ? HN22 GNP 1001 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 87 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #