data_6HZE # _model_server_result.job_id 0yZbNKs7JbPMECeQ83aRAA _model_server_result.datetime_utc '2024-11-07 15:53:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":901}' # _entry.id 6HZE # _exptl.entry_id 6HZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.139 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'beta-D-galactopyranuronic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.68 _cell.angle_gamma 90 _cell.entry_id 6HZE _cell.length_a 69.498 _cell.length_b 107.376 _cell.length_c 139.211 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K 1 1 B,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 724 A CYS 724 1_555 B SG CYS 724 B CYS 724 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc1 A OG SER 119 A SER 119 1_555 K NA NA . A NA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc2 A OG1 THR 121 A THR 121 1_555 K NA NA . A NA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc3 A O ASP 123 A ASP 123 1_555 K NA NA . A NA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 A O GLU 170 A GLU 170 1_555 D NA NA . A NA 902 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc5 A OE1 GLU 170 A GLU 170 1_555 D NA NA . A NA 902 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 A OG1 THR 666 A THR 666 1_555 F NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc7 A OG SER 696 A SER 696 1_555 F NA NA . A NA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? # _chem_comp.formula 'C6 H10 O7' _chem_comp.formula_weight 194.139 _chem_comp.id GTR _chem_comp.mon_nstd_flag . _chem_comp.name 'beta-D-galactopyranuronic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-galacturonic acid;D-galacturonic acid;galacturonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GTR sing 129 n n C1 O1 GTR sing 130 n n C1 O5 GTR sing 131 n n C1 H1 GTR sing 132 n n C2 C3 GTR sing 133 n n C2 O2 GTR sing 134 n n C2 H2 GTR sing 135 n n C3 C4 GTR sing 136 n n C3 O3 GTR sing 137 n n C3 H3 GTR sing 138 n n C4 C5 GTR sing 139 n n C4 O4 GTR sing 140 n n C4 H4 GTR sing 141 n n C5 C6 GTR sing 142 n n C5 O5 GTR sing 143 n n C5 H5 GTR sing 144 n n C6 O6A GTR doub 145 n n C6 O6B GTR sing 146 n n O1 HO1 GTR sing 147 n n O2 HO2 GTR sing 148 n n O3 HO3 GTR sing 149 n n O4 HO4 GTR sing 150 n n O6B HO6B GTR sing 151 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GTR DGalpAb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GTR 'b-D-galactopyranuronic acid' 'COMMON NAME' GMML 1 GTR b-D-GalpA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GTR GalA 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6HZE _atom_sites.fract_transf_matrix[1][1] 0.014389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002197 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTR A 1 901 1 GTR UNL . D 3 NA A 1 902 1 NA NA . E 3 NA A 1 903 2 NA NA . F 3 NA A 1 904 4 NA NA . G 3 NA A 1 905 5 NA NA . H 3 NA A 1 906 7 NA NA . I 3 NA A 1 907 8 NA NA . J 3 NA A 1 908 9 NA NA . K 3 NA A 1 909 10 NA NA . L 2 GTR B 1 901 1 GTR UNL . M 3 NA B 1 902 3 NA NA . N 3 NA B 1 903 6 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GTR . . . L 2 24.801 -12.754 3.512 1 49.93 ? C1 GTR 901 B 1 HETATM 2 C C2 GTR . . . L 2 24.738 -11.291 3.931 1 49.72 ? C2 GTR 901 B 1 HETATM 3 C C3 GTR . . . L 2 25.232 -11.1 5.37 1 50.55 ? C3 GTR 901 B 1 HETATM 4 C C4 GTR . . . L 2 24.615 -12.104 6.345 1 49.83 ? C4 GTR 901 B 1 HETATM 5 C C5 GTR . . . L 2 24.704 -13.512 5.758 1 50.53 ? C5 GTR 901 B 1 HETATM 6 C C6 GTR . . . L 2 24.131 -14.569 6.673 1 48.44 ? C6 GTR 901 B 1 HETATM 7 O O1 GTR . . . L 2 24.247 -12.925 2.206 1 48.53 ? O1 GTR 901 B 1 HETATM 8 O O2 GTR . . . L 2 25.527 -10.519 3.017 1 45.82 ? O2 GTR 901 B 1 HETATM 9 O O3 GTR . . . L 2 24.922 -9.774 5.817 1 54.82 ? O3 GTR 901 B 1 HETATM 10 O O4 GTR . . . L 2 23.259 -11.745 6.621 1 50.63 ? O4 GTR 901 B 1 HETATM 11 O O5 GTR . . . L 2 24.068 -13.527 4.467 1 52.44 ? O5 GTR 901 B 1 HETATM 12 O O6A GTR . . . L 2 23.321 -15.395 6.199 1 45.86 ? O6A GTR 901 B 1 HETATM 13 O O6B GTR . . . L 2 24.489 -14.6 7.874 1 47.82 ? O6B GTR 901 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #