data_6HZV # _model_server_result.job_id QCdo-n44GTWOaGbyCZU3LA _model_server_result.datetime_utc '2025-02-05 13:57:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6hzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 6HZV # _exptl.entry_id 6HZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.41 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[7-(2-hydroxyethyl)-9-(oxan-4-yl)-8-oxidanylidene-purin-2-yl]imidazo[1,2-a]pyridine-6-carbonitrile _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.3 _cell.angle_gamma 90 _cell.entry_id 6HZV _cell.length_a 57.072 _cell.length_b 112.814 _cell.length_c 104.466 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6HZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 165 A ASP 979 1_555 A N PTR 166 A PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C PTR 166 A PTR 980 1_555 A N PTR 167 A PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C PTR 167 A PTR 981 1_555 A N VAL 168 A VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C ASP 165 B ASP 979 1_555 B N PTR 166 B PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C PTR 166 B PTR 980 1_555 B N PTR 167 B PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C PTR 167 B PTR 981 1_555 B N VAL 168 B VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 C C ASP 165 C ASP 979 1_555 C N PTR 166 C PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 C C PTR 166 C PTR 980 1_555 C N PTR 167 C PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 C C PTR 167 C PTR 981 1_555 C N VAL 168 C VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 D C ASP 165 D ASP 979 1_555 D N PTR 166 D PTR 980 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 D C PTR 166 D PTR 980 1_555 D N PTR 167 D PTR 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 D C PTR 167 D PTR 981 1_555 D N VAL 168 D VAL 982 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C20 H19 N7 O3' _chem_comp.formula_weight 405.41 _chem_comp.id GYW _chem_comp.mon_nstd_flag . _chem_comp.name 3-[7-(2-hydroxyethyl)-9-(oxan-4-yl)-8-oxidanylidene-purin-2-yl]imidazo[1,2-a]pyridine-6-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C6 GYW doub 129 n y C4 C2 GYW sing 130 n y C6 C5 GYW sing 131 n y N9 C2 GYW doub 132 n y N9 C8 GYW sing 133 n y C2 N1 GYW sing 134 n y C8 C7 GYW doub 135 n y C5 C10 GYW sing 136 n n C5 C3 GYW doub 137 n y N1 C3 GYW sing 138 n y N1 C7 GYW sing 139 n y C10 N11 GYW trip 140 n n C7 C12 GYW sing 141 n n C12 N14 GYW doub 142 n y C12 N17 GYW sing 143 n y N14 C13 GYW sing 144 n y N17 C16 GYW doub 145 n y C13 C15 GYW doub 146 n y C16 C15 GYW sing 147 n y C16 N20 GYW sing 148 n n O28 C27 GYW sing 149 n n O28 C29 GYW sing 150 n n C15 N18 GYW sing 151 n n C26 C27 GYW sing 152 n n C26 C25 GYW sing 153 n n C30 C29 GYW sing 154 n n C30 C25 GYW sing 155 n n N20 C25 GYW sing 156 n n N20 C19 GYW sing 157 n n N18 C19 GYW sing 158 n n N18 C22 GYW sing 159 n n C19 O21 GYW doub 160 n n O24 C23 GYW sing 161 n n C23 C22 GYW sing 162 n n C3 H1 GYW sing 163 n n C4 H2 GYW sing 164 n n C6 H3 GYW sing 165 n n C8 H4 GYW sing 166 n n C23 H5 GYW sing 167 n n C23 H6 GYW sing 168 n n C27 H7 GYW sing 169 n n C27 H8 GYW sing 170 n n C30 H9 GYW sing 171 n n C30 H10 GYW sing 172 n n C22 H11 GYW sing 173 n n C22 H12 GYW sing 174 n n O24 H13 GYW sing 175 n n C13 H14 GYW sing 176 n n C25 H15 GYW sing 177 n n C29 H16 GYW sing 178 n n C29 H17 GYW sing 179 n n C26 H18 GYW sing 180 n n C26 H19 GYW sing 181 n n # _atom_sites.entry_id 6HZV _atom_sites.fract_transf_matrix[1][1] 0.017522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002557 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GYW A 1 1101 1 GYW INX . F 2 GYW B 1 1101 2 GYW INX . G 2 GYW C 1 1101 3 GYW INX . H 2 GYW D 1 1101 4 GYW INX . I 3 HOH A 1 1201 39 HOH HOH . I 3 HOH A 2 1202 30 HOH HOH . I 3 HOH A 3 1203 90 HOH HOH . I 3 HOH A 4 1204 89 HOH HOH . I 3 HOH A 5 1205 76 HOH HOH . I 3 HOH A 6 1206 7 HOH HOH . I 3 HOH A 7 1207 37 HOH HOH . I 3 HOH A 8 1208 95 HOH HOH . I 3 HOH A 9 1209 38 HOH HOH . I 3 HOH A 10 1210 34 HOH HOH . I 3 HOH A 11 1211 56 HOH HOH . I 3 HOH A 12 1212 97 HOH HOH . I 3 HOH A 13 1213 74 HOH HOH . I 3 HOH A 14 1214 92 HOH HOH . I 3 HOH A 15 1215 68 HOH HOH . I 3 HOH A 16 1216 18 HOH HOH . I 3 HOH A 17 1217 54 HOH HOH . I 3 HOH A 18 1218 100 HOH HOH . I 3 HOH A 19 1219 52 HOH HOH . I 3 HOH A 20 1220 81 HOH HOH . I 3 HOH A 21 1221 75 HOH HOH . I 3 HOH A 22 1222 15 HOH HOH . I 3 HOH A 23 1223 22 HOH HOH . I 3 HOH A 24 1224 66 HOH HOH . I 3 HOH A 25 1225 86 HOH HOH . I 3 HOH A 26 1226 36 HOH HOH . I 3 HOH A 27 1227 45 HOH HOH . I 3 HOH A 28 1228 88 HOH HOH . I 3 HOH A 29 1229 35 HOH HOH . J 3 HOH B 1 1201 82 HOH HOH . J 3 HOH B 2 1202 59 HOH HOH . J 3 HOH B 3 1203 43 HOH HOH . J 3 HOH B 4 1204 10 HOH HOH . J 3 HOH B 5 1205 14 HOH HOH . J 3 HOH B 6 1206 33 HOH HOH . J 3 HOH B 7 1207 8 HOH HOH . J 3 HOH B 8 1208 1 HOH HOH . J 3 HOH B 9 1209 41 HOH HOH . J 3 HOH B 10 1210 51 HOH HOH . J 3 HOH B 11 1211 12 HOH HOH . J 3 HOH B 12 1212 87 HOH HOH . J 3 HOH B 13 1213 28 HOH HOH . J 3 HOH B 14 1214 49 HOH HOH . J 3 HOH B 15 1215 71 HOH HOH . J 3 HOH B 16 1216 94 HOH HOH . J 3 HOH B 17 1217 99 HOH HOH . J 3 HOH B 18 1218 107 HOH HOH . J 3 HOH B 19 1219 93 HOH HOH . J 3 HOH B 20 1220 20 HOH HOH . J 3 HOH B 21 1221 70 HOH HOH . J 3 HOH B 22 1222 69 HOH HOH . J 3 HOH B 23 1223 67 HOH HOH . J 3 HOH B 24 1224 57 HOH HOH . J 3 HOH B 25 1225 105 HOH HOH . J 3 HOH B 26 1226 60 HOH HOH . J 3 HOH B 27 1227 4 HOH HOH . K 3 HOH C 1 1201 78 HOH HOH . K 3 HOH C 2 1202 29 HOH HOH . K 3 HOH C 3 1203 79 HOH HOH . K 3 HOH C 4 1204 26 HOH HOH . K 3 HOH C 5 1205 58 HOH HOH . K 3 HOH C 6 1206 40 HOH HOH . K 3 HOH C 7 1207 72 HOH HOH . K 3 HOH C 8 1208 23 HOH HOH . K 3 HOH C 9 1209 50 HOH HOH . K 3 HOH C 10 1210 19 HOH HOH . K 3 HOH C 11 1211 77 HOH HOH . K 3 HOH C 12 1212 2 HOH HOH . K 3 HOH C 13 1213 5 HOH HOH . K 3 HOH C 14 1214 103 HOH HOH . K 3 HOH C 15 1215 24 HOH HOH . K 3 HOH C 16 1216 48 HOH HOH . K 3 HOH C 17 1217 63 HOH HOH . K 3 HOH C 18 1218 98 HOH HOH . K 3 HOH C 19 1219 83 HOH HOH . K 3 HOH C 20 1220 64 HOH HOH . K 3 HOH C 21 1221 25 HOH HOH . K 3 HOH C 22 1222 42 HOH HOH . K 3 HOH C 23 1223 102 HOH HOH . K 3 HOH C 24 1224 73 HOH HOH . K 3 HOH C 25 1225 3 HOH HOH . K 3 HOH C 26 1226 17 HOH HOH . K 3 HOH C 27 1227 11 HOH HOH . K 3 HOH C 28 1228 61 HOH HOH . L 3 HOH D 1 1201 85 HOH HOH . L 3 HOH D 2 1202 9 HOH HOH . L 3 HOH D 3 1203 104 HOH HOH . L 3 HOH D 4 1204 21 HOH HOH . L 3 HOH D 5 1205 13 HOH HOH . L 3 HOH D 6 1206 106 HOH HOH . L 3 HOH D 7 1207 55 HOH HOH . L 3 HOH D 8 1208 91 HOH HOH . L 3 HOH D 9 1209 101 HOH HOH . L 3 HOH D 10 1210 47 HOH HOH . L 3 HOH D 11 1211 6 HOH HOH . L 3 HOH D 12 1212 31 HOH HOH . L 3 HOH D 13 1213 27 HOH HOH . L 3 HOH D 14 1214 16 HOH HOH . L 3 HOH D 15 1215 44 HOH HOH . L 3 HOH D 16 1216 84 HOH HOH . L 3 HOH D 17 1217 46 HOH HOH . L 3 HOH D 18 1218 96 HOH HOH . L 3 HOH D 19 1219 53 HOH HOH . L 3 HOH D 20 1220 32 HOH HOH . L 3 HOH D 21 1221 62 HOH HOH . L 3 HOH D 22 1222 80 HOH HOH . L 3 HOH D 23 1223 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GYW . . . E 2 10.212 26.066 0.001 1 33.54 ? C2 GYW 1101 A 1 HETATM 2 C C3 GYW . . . E 2 8.77 26.74 1.74 1 34.72 ? C3 GYW 1101 A 1 HETATM 3 C C4 GYW . . . E 2 9.725 27.026 -0.858 1 32.36 ? C4 GYW 1101 A 1 HETATM 4 C C5 GYW . . . E 2 8.25 27.723 0.907 1 33.07 ? C5 GYW 1101 A 1 HETATM 5 C C6 GYW . . . E 2 8.729 27.868 -0.388 1 32.31 ? C6 GYW 1101 A 1 HETATM 6 C C7 GYW . . . E 2 10.405 24.929 1.814 1 33.2 ? C7 GYW 1101 A 1 HETATM 7 C C8 GYW . . . E 2 11.305 24.447 0.886 1 33.65 ? C8 GYW 1101 A 1 HETATM 8 C C12 GYW . . . E 2 10.285 24.387 3.181 1 33.97 ? C12 GYW 1101 A 1 HETATM 9 C C15 GYW . . . E 2 10.081 23.398 5.761 1 34.29 ? C15 GYW 1101 A 1 HETATM 10 C C16 GYW . . . E 2 9.469 24.572 5.406 1 34.1 ? C16 GYW 1101 A 1 HETATM 11 C C19 GYW . . . E 2 9.04 24.187 7.516 1 35.5 ? C19 GYW 1101 A 1 HETATM 12 C C23 GYW . . . E 2 11.71 21.517 7.805 1 43.14 ? C23 GYW 1101 A 1 HETATM 13 C C27 GYW . . . E 2 5.975 27.594 5.79 1 39.09 ? C27 GYW 1101 A 1 HETATM 14 O O28 GYW . . . E 2 6.852 28.684 5.493 1 36.88 ? O28 GYW 1101 A 1 HETATM 15 C C30 GYW . . . E 2 8.807 27.558 6.364 1 33.19 ? C30 GYW 1101 A 1 HETATM 16 O O21 GYW . . . E 2 8.601 24.312 8.639 1 36.73 ? O21 GYW 1101 A 1 HETATM 17 N N18 GYW . . . E 2 9.834 23.115 7.123 1 35.29 ? N18 GYW 1101 A 1 HETATM 18 C C22 GYW . . . E 2 10.252 21.976 7.97 1 37.35 ? C22 GYW 1101 A 1 HETATM 19 O O24 GYW . . . E 2 12.609 22.618 7.738 1 41.94 ? O24 GYW 1101 A 1 HETATM 20 C C13 GYW . . . E 2 10.821 22.692 4.826 1 33.78 ? C13 GYW 1101 A 1 HETATM 21 N N14 GYW . . . E 2 10.92 23.2 3.539 1 33.98 ? N14 GYW 1101 A 1 HETATM 22 N N20 GYW . . . E 2 8.786 25.113 6.51 1 34.78 ? N20 GYW 1101 A 1 HETATM 23 C C25 GYW . . . E 2 7.965 26.327 6.692 1 34.26 ? C25 GYW 1101 A 1 HETATM 24 C C29 GYW . . . E 2 7.906 28.795 6.45 1 35.23 ? C29 GYW 1101 A 1 HETATM 25 C C26 GYW . . . E 2 6.739 26.258 5.763 1 36.78 ? C26 GYW 1101 A 1 HETATM 26 N N17 GYW . . . E 2 9.557 25.087 4.132 1 35.91 ? N17 GYW 1101 A 1 HETATM 27 N N1 GYW . . . E 2 9.743 25.942 1.248 1 33.44 ? N1 GYW 1101 A 1 HETATM 28 N N9 GYW . . . E 2 11.171 25.166 -0.244 1 32.53 ? N9 GYW 1101 A 1 HETATM 29 C C10 GYW . . . E 2 7.222 28.599 1.362 1 33.66 ? C10 GYW 1101 A 1 HETATM 30 N N11 GYW . . . E 2 6.385 29.314 1.726 1 39.09 ? N11 GYW 1101 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #