data_6I08 # _model_server_result.job_id WtJPbNFX7AZq47TwoxvKog _model_server_result.datetime_utc '2024-11-27 12:15:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":402}' # _entry.id 6I08 # _exptl.entry_id 6I08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.83 _cell.angle_gamma 90 _cell.entry_id 6I08 _cell.length_a 180.8 _cell.length_b 134.35 _cell.length_c 159.35 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 P N N ? 3 S N N ? 3 V N N # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 342 n n C1 O3P PLC sing 343 n n C1 H11 PLC sing 344 n n C1 H12 PLC sing 345 n n C2 C3 PLC sing 346 n n C2 O2 PLC sing 347 n n C2 H2 PLC sing 348 n n C3 O3 PLC sing 349 n n C3 H31 PLC sing 350 n n C3 H32 PLC sing 351 n n C4 C5 PLC sing 352 n n C4 O4P PLC sing 353 n n C4 H41 PLC sing 354 n n C4 H42 PLC sing 355 n n C5 N PLC sing 356 n n C5 H51 PLC sing 357 n n C5 H52 PLC sing 358 n n C6 N PLC sing 359 n n C6 H61 PLC sing 360 n n C6 H62 PLC sing 361 n n C6 H63 PLC sing 362 n n C7 N PLC sing 363 n n C7 H71 PLC sing 364 n n C7 H72 PLC sing 365 n n C7 H73 PLC sing 366 n n C8 N PLC sing 367 n n C8 H81 PLC sing 368 n n C8 H82 PLC sing 369 n n C8 H83 PLC sing 370 n n C' C1' PLC sing 371 n n C' O' PLC doub 372 n n C' O2 PLC sing 373 n n C1' C2' PLC sing 374 n n C1' "H1'1" PLC sing 375 n n C1' "H1'2" PLC sing 376 n n C2' C3' PLC sing 377 n n C2' "H2'1" PLC sing 378 n n C2' "H2'2" PLC sing 379 n n C3' C4' PLC sing 380 n n C3' "H3'1" PLC sing 381 n n C3' "H3'2" PLC sing 382 n n C4' C5' PLC sing 383 n n C4' "H4'1" PLC sing 384 n n C4' "H4'2" PLC sing 385 n n C5' C6' PLC sing 386 n n C5' "H5'1" PLC sing 387 n n C5' "H5'2" PLC sing 388 n n C6' C7' PLC sing 389 n n C6' "H6'1" PLC sing 390 n n C6' "H6'2" PLC sing 391 n n C7' C8' PLC sing 392 n n C7' "H7'1" PLC sing 393 n n C7' "H7'2" PLC sing 394 n n C8' C9' PLC sing 395 n n C8' "H8'1" PLC sing 396 n n C8' "H8'2" PLC sing 397 n n C9' CA' PLC sing 398 n n C9' "H9'1" PLC sing 399 n n C9' "H9'2" PLC sing 400 n n CA' CB' PLC sing 401 n n CA' "HT'1" PLC sing 402 n n CA' "HT'2" PLC sing 403 n n CB' "HE'1" PLC sing 404 n n CB' "HE'2" PLC sing 405 n n CB' "HE'3" PLC sing 406 n n CB C1B PLC sing 407 n n CB OB PLC doub 408 n n CB O3 PLC sing 409 n n C1B C2B PLC sing 410 n n C1B H1A1 PLC sing 411 n n C1B H1A2 PLC sing 412 n n C2B C3B PLC sing 413 n n C2B H2A1 PLC sing 414 n n C2B H2A2 PLC sing 415 n n C3B C4B PLC sing 416 n n C3B H3A1 PLC sing 417 n n C3B H3A2 PLC sing 418 n n C4B C5B PLC sing 419 n n C4B H4A1 PLC sing 420 n n C4B H4A2 PLC sing 421 n n C5B C6B PLC sing 422 n n C5B H5A1 PLC sing 423 n n C5B H5A2 PLC sing 424 n n C6B C7B PLC sing 425 n n C6B H6A1 PLC sing 426 n n C6B H6A2 PLC sing 427 n n C7B C8B PLC sing 428 n n C7B H7A1 PLC sing 429 n n C7B H7A2 PLC sing 430 n n C8B C9B PLC sing 431 n n C8B H8A1 PLC sing 432 n n C8B H8A2 PLC sing 433 n n C9B CAA PLC sing 434 n n C9B H9A1 PLC sing 435 n n C9B H9A2 PLC sing 436 n n CAA CBA PLC sing 437 n n CAA HTA1 PLC sing 438 n n CAA HTA2 PLC sing 439 n n CBA HEA1 PLC sing 440 n n CBA HEA2 PLC sing 441 n n CBA HEA3 PLC sing 442 n n O1P P PLC doub 443 n n O2P P PLC sing 444 n n O2P HOP2 PLC sing 445 n n O3P P PLC sing 446 n n O4P P PLC sing 447 n n # _atom_sites.entry_id 6I08 _atom_sites.fract_transf_matrix[1][1] 0.005531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CL D 1 401 318 CL CL . G 3 PLC D 1 402 320 PLC PLC . H 4 LMT D 1 403 318 LMT LMT . I 5 NA D 1 404 7 NA NA . J 2 CL A 1 401 318 CL CL . K 3 PLC A 1 402 320 PLC PLC . L 5 NA A 1 403 1 NA NA . M 5 NA A 1 404 2 NA NA . N 5 NA A 1 405 3 NA NA . O 2 CL B 1 401 318 CL CL . P 3 PLC B 1 402 320 PLC PLC . Q 5 NA B 1 403 6 NA NA . R 2 CL C 1 401 318 CL CL . S 3 PLC C 1 402 320 PLC PLC . T 5 NA C 1 403 4 NA NA . U 2 CL E 1 401 318 CL CL . V 3 PLC E 1 402 320 PLC PLC . W 5 NA E 1 403 5 NA NA . X 6 HOH D 1 501 47 HOH HOH . X 6 HOH D 2 502 366 HOH HOH . X 6 HOH D 3 503 496 HOH HOH . X 6 HOH D 4 504 25 HOH HOH . X 6 HOH D 5 505 200 HOH HOH . X 6 HOH D 6 506 64 HOH HOH . X 6 HOH D 7 507 32 HOH HOH . X 6 HOH D 8 508 19 HOH HOH . X 6 HOH D 9 509 358 HOH HOH . X 6 HOH D 10 510 110 HOH HOH . Y 6 HOH A 1 501 13 HOH HOH . Y 6 HOH A 2 502 66 HOH HOH . Y 6 HOH A 3 503 86 HOH HOH . Y 6 HOH A 4 504 230 HOH HOH . Y 6 HOH A 5 505 573 HOH HOH . Y 6 HOH A 6 506 2 HOH HOH . Y 6 HOH A 7 507 176 HOH HOH . Y 6 HOH A 8 508 71 HOH HOH . Y 6 HOH A 9 509 72 HOH HOH . Y 6 HOH A 10 510 77 HOH HOH . Y 6 HOH A 11 511 8 HOH HOH . Y 6 HOH A 12 512 169 HOH HOH . Y 6 HOH A 13 513 368 HOH HOH . Y 6 HOH A 14 514 10 HOH HOH . Y 6 HOH A 15 515 73 HOH HOH . Y 6 HOH A 16 516 89 HOH HOH . Y 6 HOH A 17 517 627 HOH HOH . Z 6 HOH B 1 501 22 HOH HOH . Z 6 HOH B 2 502 27 HOH HOH . Z 6 HOH B 3 503 26 HOH HOH . Z 6 HOH B 4 504 54 HOH HOH . Z 6 HOH B 5 505 5 HOH HOH . Z 6 HOH B 6 506 65 HOH HOH . Z 6 HOH B 7 507 68 HOH HOH . Z 6 HOH B 8 508 1 HOH HOH . Z 6 HOH B 9 509 69 HOH HOH . Z 6 HOH B 10 510 57 HOH HOH . Z 6 HOH B 11 511 124 HOH HOH . Z 6 HOH B 12 512 39 HOH HOH . Z 6 HOH B 13 513 3 HOH HOH . Z 6 HOH B 14 514 271 HOH HOH . Z 6 HOH B 15 515 108 HOH HOH . Z 6 HOH B 16 516 82 HOH HOH . AA 6 HOH C 1 501 369 HOH HOH . AA 6 HOH C 2 502 42 HOH HOH . AA 6 HOH C 3 503 381 HOH HOH . AA 6 HOH C 4 504 356 HOH HOH . AA 6 HOH C 5 505 52 HOH HOH . AA 6 HOH C 6 506 186 HOH HOH . AA 6 HOH C 7 507 94 HOH HOH . AA 6 HOH C 8 508 116 HOH HOH . AA 6 HOH C 9 509 84 HOH HOH . AA 6 HOH C 10 510 37 HOH HOH . AA 6 HOH C 11 511 12 HOH HOH . AA 6 HOH C 12 512 9 HOH HOH . BA 6 HOH E 1 501 16 HOH HOH . BA 6 HOH E 2 502 24 HOH HOH . BA 6 HOH E 3 503 123 HOH HOH . BA 6 HOH E 4 504 357 HOH HOH . BA 6 HOH E 5 505 100 HOH HOH . BA 6 HOH E 6 506 139 HOH HOH . BA 6 HOH E 7 507 104 HOH HOH . BA 6 HOH E 8 508 30 HOH HOH . BA 6 HOH E 9 509 202 HOH HOH . BA 6 HOH E 10 510 43 HOH HOH . BA 6 HOH E 11 511 70 HOH HOH . BA 6 HOH E 12 512 174 HOH HOH . BA 6 HOH E 13 513 60 HOH HOH . BA 6 HOH E 14 514 11 HOH HOH . BA 6 HOH E 15 515 99 HOH HOH . BA 6 HOH E 16 516 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . P 3 25.843 -32.443 50.435 1 168.69 ? C1 PLC 402 B 1 HETATM 2 C C2 PLC . . . P 3 26.559 -33.167 51.547 1 163.9 ? C2 PLC 402 B 1 HETATM 3 C C3 PLC . . . P 3 26.894 -34.591 51.161 1 160.67 ? C3 PLC 402 B 1 HETATM 4 C C4 PLC . . . P 3 23.105 -34.775 49.54 1 177.51 ? C4 PLC 402 B 1 HETATM 5 C C5 PLC . . . P 3 22.998 -36.124 48.843 1 176.38 ? C5 PLC 402 B 1 HETATM 6 C C6 PLC . . . P 3 23.594 -38.503 48.628 1 174.66 ? C6 PLC 402 B 1 HETATM 7 C C7 PLC . . . P 3 25.383 -36.866 48.68 1 173.76 ? C7 PLC 402 B 1 HETATM 8 C C8 PLC . . . P 3 24.153 -37.391 50.716 1 174.28 ? C8 PLC 402 B 1 HETATM 9 C C' PLC . . . P 3 28.115 -32.146 53.113 1 155.44 ? C' PLC 402 B 1 HETATM 10 C C1' PLC . . . P 3 29.476 -31.513 53.191 1 149.24 ? C1' PLC 402 B 1 HETATM 11 C C2' PLC . . . P 3 30.292 -31.913 54.411 1 142.36 ? C2' PLC 402 B 1 HETATM 12 C C3' PLC . . . P 3 31.764 -31.589 54.26 1 137.79 ? C3' PLC 402 B 1 HETATM 13 C C4' PLC . . . P 3 32.543 -31.688 55.555 1 134.81 ? C4' PLC 402 B 1 HETATM 14 C C5' PLC . . . P 3 34.016 -31.363 55.428 1 132.34 ? C5' PLC 402 B 1 HETATM 15 C C6' PLC . . . P 3 34.498 -30.476 56.556 1 132.64 ? C6' PLC 402 B 1 HETATM 16 C C7' PLC . . . P 3 35.905 -30.796 57.024 1 134.79 ? C7' PLC 402 B 1 HETATM 17 C C8' PLC . . . P 3 36.824 -29.586 57.098 1 136.8 ? C8' PLC 402 B 1 HETATM 18 C C9' PLC . . . P 3 37.453 -29.192 55.771 1 137.5 ? C9' PLC 402 B 1 HETATM 19 C CB PLC . . . P 3 28.231 -36.319 52.181 1 151.84 ? CB PLC 402 B 1 HETATM 20 C C1B PLC . . . P 3 29.605 -36.618 52.72 1 143.17 ? C1B PLC 402 B 1 HETATM 21 C C2B PLC . . . P 3 30.15 -35.552 53.663 1 136.05 ? C2B PLC 402 B 1 HETATM 22 C C3B PLC . . . P 3 31.402 -35.973 54.411 1 131.5 ? C3B PLC 402 B 1 HETATM 23 C C4B PLC . . . P 3 32.7 -35.563 53.743 1 129.42 ? C4B PLC 402 B 1 HETATM 24 C C5B PLC . . . P 3 33.759 -35.016 54.694 1 128.95 ? C5B PLC 402 B 1 HETATM 25 C C6B PLC . . . P 3 34.566 -36.055 55.46 1 127.1 ? C6B PLC 402 B 1 HETATM 26 C C7B PLC . . . P 3 35.714 -35.465 56.262 1 124.28 ? C7B PLC 402 B 1 HETATM 27 C C8B PLC . . . P 3 36.367 -36.453 57.21 1 124.58 ? C8B PLC 402 B 1 HETATM 28 O O' PLC . . . P 3 27.412 -32.4 54.059 1 155.82 ? O' PLC 402 B 1 HETATM 29 O OB PLC . . . P 3 27.337 -37.124 52.106 1 153.68 ? OB PLC 402 B 1 HETATM 30 O O2 PLC . . . P 3 27.777 -32.402 51.833 1 160.87 ? O2 PLC 402 B 1 HETATM 31 O O3 PLC . . . P 3 28.127 -35.041 51.778 1 157.22 ? O3 PLC 402 B 1 HETATM 32 O O1P PLC . . . P 3 24.003 -31.178 48.451 1 178.55 ? O1P PLC 402 B 1 HETATM 33 O O2P PLC . . . P 3 22.128 -31.879 49.802 1 179.05 ? O2P PLC 402 B 1 HETATM 34 O O3P PLC . . . P 3 24.43 -32.386 50.737 1 173.61 ? O3P PLC 402 B 1 HETATM 35 O O4P PLC . . . P 3 23.481 -33.726 48.606 1 178.51 ? O4P PLC 402 B 1 HETATM 36 N N PLC . . . P 3 24.035 -37.206 49.232 1 174.74 ? N PLC 402 B 1 HETATM 37 P P PLC . . . P 3 23.548 -32.258 49.363 1 178.44 ? P PLC 402 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 37 #