data_6I08
#
_model_server_result.job_id            M60WFloltBFYgBjIAMYu6A 
_model_server_result.datetime_utc      '2024-11-23 19:59:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6i08 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":402}' 
#
_entry.id    6I08 
#
_exptl.entry_id    6I08 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.83 
_cell.angle_gamma         90 
_cell.entry_id            6I08 
_cell.length_a            180.8 
_cell.length_b            134.35 
_cell.length_c            159.35 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6I08 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 K N N 
? 3 P N N 
? 3 S N N 
? 3 V N N 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 342 n n 
C1 O3P PLC sing 343 n n 
C1 H11 PLC sing 344 n n 
C1 H12 PLC sing 345 n n 
C2 C3 PLC sing 346 n n 
C2 O2 PLC sing 347 n n 
C2 H2 PLC sing 348 n n 
C3 O3 PLC sing 349 n n 
C3 H31 PLC sing 350 n n 
C3 H32 PLC sing 351 n n 
C4 C5 PLC sing 352 n n 
C4 O4P PLC sing 353 n n 
C4 H41 PLC sing 354 n n 
C4 H42 PLC sing 355 n n 
C5 N PLC sing 356 n n 
C5 H51 PLC sing 357 n n 
C5 H52 PLC sing 358 n n 
C6 N PLC sing 359 n n 
C6 H61 PLC sing 360 n n 
C6 H62 PLC sing 361 n n 
C6 H63 PLC sing 362 n n 
C7 N PLC sing 363 n n 
C7 H71 PLC sing 364 n n 
C7 H72 PLC sing 365 n n 
C7 H73 PLC sing 366 n n 
C8 N PLC sing 367 n n 
C8 H81 PLC sing 368 n n 
C8 H82 PLC sing 369 n n 
C8 H83 PLC sing 370 n n 
C' C1' PLC sing 371 n n 
C' O' PLC doub 372 n n 
C' O2 PLC sing 373 n n 
C1' C2' PLC sing 374 n n 
C1' "H1'1" PLC sing 375 n n 
C1' "H1'2" PLC sing 376 n n 
C2' C3' PLC sing 377 n n 
C2' "H2'1" PLC sing 378 n n 
C2' "H2'2" PLC sing 379 n n 
C3' C4' PLC sing 380 n n 
C3' "H3'1" PLC sing 381 n n 
C3' "H3'2" PLC sing 382 n n 
C4' C5' PLC sing 383 n n 
C4' "H4'1" PLC sing 384 n n 
C4' "H4'2" PLC sing 385 n n 
C5' C6' PLC sing 386 n n 
C5' "H5'1" PLC sing 387 n n 
C5' "H5'2" PLC sing 388 n n 
C6' C7' PLC sing 389 n n 
C6' "H6'1" PLC sing 390 n n 
C6' "H6'2" PLC sing 391 n n 
C7' C8' PLC sing 392 n n 
C7' "H7'1" PLC sing 393 n n 
C7' "H7'2" PLC sing 394 n n 
C8' C9' PLC sing 395 n n 
C8' "H8'1" PLC sing 396 n n 
C8' "H8'2" PLC sing 397 n n 
C9' CA' PLC sing 398 n n 
C9' "H9'1" PLC sing 399 n n 
C9' "H9'2" PLC sing 400 n n 
CA' CB' PLC sing 401 n n 
CA' "HT'1" PLC sing 402 n n 
CA' "HT'2" PLC sing 403 n n 
CB' "HE'1" PLC sing 404 n n 
CB' "HE'2" PLC sing 405 n n 
CB' "HE'3" PLC sing 406 n n 
CB C1B PLC sing 407 n n 
CB OB PLC doub 408 n n 
CB O3 PLC sing 409 n n 
C1B C2B PLC sing 410 n n 
C1B H1A1 PLC sing 411 n n 
C1B H1A2 PLC sing 412 n n 
C2B C3B PLC sing 413 n n 
C2B H2A1 PLC sing 414 n n 
C2B H2A2 PLC sing 415 n n 
C3B C4B PLC sing 416 n n 
C3B H3A1 PLC sing 417 n n 
C3B H3A2 PLC sing 418 n n 
C4B C5B PLC sing 419 n n 
C4B H4A1 PLC sing 420 n n 
C4B H4A2 PLC sing 421 n n 
C5B C6B PLC sing 422 n n 
C5B H5A1 PLC sing 423 n n 
C5B H5A2 PLC sing 424 n n 
C6B C7B PLC sing 425 n n 
C6B H6A1 PLC sing 426 n n 
C6B H6A2 PLC sing 427 n n 
C7B C8B PLC sing 428 n n 
C7B H7A1 PLC sing 429 n n 
C7B H7A2 PLC sing 430 n n 
C8B C9B PLC sing 431 n n 
C8B H8A1 PLC sing 432 n n 
C8B H8A2 PLC sing 433 n n 
C9B CAA PLC sing 434 n n 
C9B H9A1 PLC sing 435 n n 
C9B H9A2 PLC sing 436 n n 
CAA CBA PLC sing 437 n n 
CAA HTA1 PLC sing 438 n n 
CAA HTA2 PLC sing 439 n n 
CBA HEA1 PLC sing 440 n n 
CBA HEA2 PLC sing 441 n n 
CBA HEA3 PLC sing 442 n n 
O1P P PLC doub 443 n n 
O2P P PLC sing 444 n n 
O2P HOP2 PLC sing 445 n n 
O3P P PLC sing 446 n n 
O4P P PLC sing 447 n n 
#
_atom_sites.entry_id                     6I08 
_atom_sites.fract_transf_matrix[1][1]    0.005531 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001159 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006412 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 CL D 1 401 318 CL CL . 
G 3 PLC D 1 402 320 PLC PLC . 
H 4 LMT D 1 403 318 LMT LMT . 
I 5 NA D 1 404 7 NA NA . 
J 2 CL A 1 401 318 CL CL . 
K 3 PLC A 1 402 320 PLC PLC . 
L 5 NA A 1 403 1 NA NA . 
M 5 NA A 1 404 2 NA NA . 
N 5 NA A 1 405 3 NA NA . 
O 2 CL B 1 401 318 CL CL . 
P 3 PLC B 1 402 320 PLC PLC . 
Q 5 NA B 1 403 6 NA NA . 
R 2 CL C 1 401 318 CL CL . 
S 3 PLC C 1 402 320 PLC PLC . 
T 5 NA C 1 403 4 NA NA . 
U 2 CL E 1 401 318 CL CL . 
V 3 PLC E 1 402 320 PLC PLC . 
W 5 NA E 1 403 5 NA NA . 
X 6 HOH D 1 501 47 HOH HOH . 
X 6 HOH D 2 502 366 HOH HOH . 
X 6 HOH D 3 503 496 HOH HOH . 
X 6 HOH D 4 504 25 HOH HOH . 
X 6 HOH D 5 505 200 HOH HOH . 
X 6 HOH D 6 506 64 HOH HOH . 
X 6 HOH D 7 507 32 HOH HOH . 
X 6 HOH D 8 508 19 HOH HOH . 
X 6 HOH D 9 509 358 HOH HOH . 
X 6 HOH D 10 510 110 HOH HOH . 
Y 6 HOH A 1 501 13 HOH HOH . 
Y 6 HOH A 2 502 66 HOH HOH . 
Y 6 HOH A 3 503 86 HOH HOH . 
Y 6 HOH A 4 504 230 HOH HOH . 
Y 6 HOH A 5 505 573 HOH HOH . 
Y 6 HOH A 6 506 2 HOH HOH . 
Y 6 HOH A 7 507 176 HOH HOH . 
Y 6 HOH A 8 508 71 HOH HOH . 
Y 6 HOH A 9 509 72 HOH HOH . 
Y 6 HOH A 10 510 77 HOH HOH . 
Y 6 HOH A 11 511 8 HOH HOH . 
Y 6 HOH A 12 512 169 HOH HOH . 
Y 6 HOH A 13 513 368 HOH HOH . 
Y 6 HOH A 14 514 10 HOH HOH . 
Y 6 HOH A 15 515 73 HOH HOH . 
Y 6 HOH A 16 516 89 HOH HOH . 
Y 6 HOH A 17 517 627 HOH HOH . 
Z 6 HOH B 1 501 22 HOH HOH . 
Z 6 HOH B 2 502 27 HOH HOH . 
Z 6 HOH B 3 503 26 HOH HOH . 
Z 6 HOH B 4 504 54 HOH HOH . 
Z 6 HOH B 5 505 5 HOH HOH . 
Z 6 HOH B 6 506 65 HOH HOH . 
Z 6 HOH B 7 507 68 HOH HOH . 
Z 6 HOH B 8 508 1 HOH HOH . 
Z 6 HOH B 9 509 69 HOH HOH . 
Z 6 HOH B 10 510 57 HOH HOH . 
Z 6 HOH B 11 511 124 HOH HOH . 
Z 6 HOH B 12 512 39 HOH HOH . 
Z 6 HOH B 13 513 3 HOH HOH . 
Z 6 HOH B 14 514 271 HOH HOH . 
Z 6 HOH B 15 515 108 HOH HOH . 
Z 6 HOH B 16 516 82 HOH HOH . 
AA 6 HOH C 1 501 369 HOH HOH . 
AA 6 HOH C 2 502 42 HOH HOH . 
AA 6 HOH C 3 503 381 HOH HOH . 
AA 6 HOH C 4 504 356 HOH HOH . 
AA 6 HOH C 5 505 52 HOH HOH . 
AA 6 HOH C 6 506 186 HOH HOH . 
AA 6 HOH C 7 507 94 HOH HOH . 
AA 6 HOH C 8 508 116 HOH HOH . 
AA 6 HOH C 9 509 84 HOH HOH . 
AA 6 HOH C 10 510 37 HOH HOH . 
AA 6 HOH C 11 511 12 HOH HOH . 
AA 6 HOH C 12 512 9 HOH HOH . 
BA 6 HOH E 1 501 16 HOH HOH . 
BA 6 HOH E 2 502 24 HOH HOH . 
BA 6 HOH E 3 503 123 HOH HOH . 
BA 6 HOH E 4 504 357 HOH HOH . 
BA 6 HOH E 5 505 100 HOH HOH . 
BA 6 HOH E 6 506 139 HOH HOH . 
BA 6 HOH E 7 507 104 HOH HOH . 
BA 6 HOH E 8 508 30 HOH HOH . 
BA 6 HOH E 9 509 202 HOH HOH . 
BA 6 HOH E 10 510 43 HOH HOH . 
BA 6 HOH E 11 511 70 HOH HOH . 
BA 6 HOH E 12 512 174 HOH HOH . 
BA 6 HOH E 13 513 60 HOH HOH . 
BA 6 HOH E 14 514 11 HOH HOH . 
BA 6 HOH E 15 515 99 HOH HOH . 
BA 6 HOH E 16 516 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLC . . . S 3 50.744 -55.29 37.848 1 166.44 ? C1 PLC 402 C 1 
HETATM 2 C C2 PLC . . . S 3 51.98 -55.399 38.705 1 157.82 ? C2 PLC 402 C 1 
HETATM 3 C C3 PLC . . . S 3 53.239 -55.445 37.868 1 155.28 ? C3 PLC 402 C 1 
HETATM 4 C C4 PLC . . . S 3 51.115 -58.076 35.386 1 181.48 ? C4 PLC 402 C 1 
HETATM 5 C C5 PLC . . . S 3 52.004 -58.37 34.184 1 179.5 ? C5 PLC 402 C 1 
HETATM 6 C C6 PLC . . . S 3 54.181 -58.591 33.11 1 176.77 ? C6 PLC 402 C 1 
HETATM 7 C C7 PLC . . . S 3 53.707 -56.531 34.307 1 176.85 ? C7 PLC 402 C 1 
HETATM 8 C C8 PLC . . . S 3 54.138 -58.591 35.54 1 177.35 ? C8 PLC 402 C 1 
HETATM 9 C C' PLC . . . S 3 52.3 -54.403 40.898 1 142.32 ? C' PLC 402 C 1 
HETATM 10 C C1' PLC . . . S 3 52.429 -53.082 41.596 1 132.66 ? C1' PLC 402 C 1 
HETATM 11 C C2' PLC . . . S 3 53.505 -53.066 42.668 1 122.78 ? C2' PLC 402 C 1 
HETATM 12 C C3' PLC . . . S 3 53.905 -51.669 43.085 1 114.9 ? C3' PLC 402 C 1 
HETATM 13 C C4' PLC . . . S 3 54.724 -51.661 44.354 1 110.53 ? C4' PLC 402 C 1 
HETATM 14 C C5' PLC . . . S 3 55.163 -50.29 44.818 1 109.57 ? C5' PLC 402 C 1 
HETATM 15 C C6' PLC . . . S 3 54.914 -50.079 46.297 1 110.4 ? C6' PLC 402 C 1 
HETATM 16 C C7' PLC . . . S 3 55.975 -49.237 46.979 1 111.82 ? C7' PLC 402 C 1 
HETATM 17 C C8' PLC . . . S 3 55.41 -48.079 47.78 1 114.36 ? C8' PLC 402 C 1 
HETATM 18 C C9' PLC . . . S 3 54.951 -46.903 46.93 1 115.86 ? C9' PLC 402 C 1 
HETATM 19 C CB PLC . . . S 3 55.598 -55.298 38.35 1 147.15 ? CB PLC 402 C 1 
HETATM 20 C C1B PLC . . . S 3 56.63 -54.452 39.041 1 137.75 ? C1B PLC 402 C 1 
HETATM 21 C C2B PLC . . . S 3 56.264 -54.076 40.47 1 130.86 ? C2B PLC 402 C 1 
HETATM 22 C C3B PLC . . . S 3 57.417 -53.493 41.268 1 126.23 ? C3B PLC 402 C 1 
HETATM 23 C C4B PLC . . . S 3 57.517 -51.979 41.208 1 123.99 ? C4B PLC 402 C 1 
HETATM 24 C C5B PLC . . . S 3 57.884 -51.315 42.528 1 122.2 ? C5B PLC 402 C 1 
HETATM 25 C C6B PLC . . . S 3 59.355 -51.366 42.897 1 120.45 ? C6B PLC 402 C 1 
HETATM 26 C C7B PLC . . . S 3 59.678 -50.627 44.182 1 119.88 ? C7B PLC 402 C 1 
HETATM 27 C C8B PLC . . . S 3 61.137 -50.753 44.588 1 120.56 ? C8B PLC 402 C 1 
HETATM 28 O O' PLC . . . S 3 52.46 -55.476 41.419 1 142.95 ? O' PLC 402 C 1 
HETATM 29 O OB PLC . . . S 3 55.847 -56.278 37.692 1 151.34 ? OB PLC 402 C 1 
HETATM 30 O O2 PLC . . . S 3 51.997 -54.233 39.595 1 150.86 ? O2 PLC 402 C 1 
HETATM 31 O O3 PLC . . . S 3 54.358 -54.817 38.545 1 151.77 ? O3 PLC 402 C 1 
HETATM 32 O O1P PLC . . . S 3 48.274 -55.559 36.183 1 179.53 ? O1P PLC 402 C 1 
HETATM 33 O O2P PLC . . . S 3 48.296 -57.975 36.561 1 180.36 ? O2P PLC 402 C 1 
HETATM 34 O O3P PLC . . . S 3 50.09 -56.581 37.77 1 174.84 ? O3P PLC 402 C 1 
HETATM 35 O O4P PLC . . . S 3 50.196 -56.978 35.121 1 182.43 ? O4P PLC 402 C 1 
HETATM 36 N N PLC . . . S 3 53.499 -58.015 34.31 1 177.52 ? N PLC 402 C 1 
HETATM 37 P P PLC . . . S 3 49.179 -56.716 36.403 1 180.38 ? P PLC 402 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#