data_6I08 # _model_server_result.job_id 2XXw3Lyg2I5k7pUQsLwdbQ _model_server_result.datetime_utc '2024-11-23 19:55:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 6I08 # _exptl.entry_id 6I08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.83 _cell.angle_gamma 90 _cell.entry_id 6I08 _cell.length_a 180.8 _cell.length_b 134.35 _cell.length_c 159.35 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 6I08 _atom_sites.fract_transf_matrix[1][1] 0.005531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CL D 1 401 318 CL CL . G 3 PLC D 1 402 320 PLC PLC . H 4 LMT D 1 403 318 LMT LMT . I 5 NA D 1 404 7 NA NA . J 2 CL A 1 401 318 CL CL . K 3 PLC A 1 402 320 PLC PLC . L 5 NA A 1 403 1 NA NA . M 5 NA A 1 404 2 NA NA . N 5 NA A 1 405 3 NA NA . O 2 CL B 1 401 318 CL CL . P 3 PLC B 1 402 320 PLC PLC . Q 5 NA B 1 403 6 NA NA . R 2 CL C 1 401 318 CL CL . S 3 PLC C 1 402 320 PLC PLC . T 5 NA C 1 403 4 NA NA . U 2 CL E 1 401 318 CL CL . V 3 PLC E 1 402 320 PLC PLC . W 5 NA E 1 403 5 NA NA . X 6 HOH D 1 501 47 HOH HOH . X 6 HOH D 2 502 366 HOH HOH . X 6 HOH D 3 503 496 HOH HOH . X 6 HOH D 4 504 25 HOH HOH . X 6 HOH D 5 505 200 HOH HOH . X 6 HOH D 6 506 64 HOH HOH . X 6 HOH D 7 507 32 HOH HOH . X 6 HOH D 8 508 19 HOH HOH . X 6 HOH D 9 509 358 HOH HOH . X 6 HOH D 10 510 110 HOH HOH . Y 6 HOH A 1 501 13 HOH HOH . Y 6 HOH A 2 502 66 HOH HOH . Y 6 HOH A 3 503 86 HOH HOH . Y 6 HOH A 4 504 230 HOH HOH . Y 6 HOH A 5 505 573 HOH HOH . Y 6 HOH A 6 506 2 HOH HOH . Y 6 HOH A 7 507 176 HOH HOH . Y 6 HOH A 8 508 71 HOH HOH . Y 6 HOH A 9 509 72 HOH HOH . Y 6 HOH A 10 510 77 HOH HOH . Y 6 HOH A 11 511 8 HOH HOH . Y 6 HOH A 12 512 169 HOH HOH . Y 6 HOH A 13 513 368 HOH HOH . Y 6 HOH A 14 514 10 HOH HOH . Y 6 HOH A 15 515 73 HOH HOH . Y 6 HOH A 16 516 89 HOH HOH . Y 6 HOH A 17 517 627 HOH HOH . Z 6 HOH B 1 501 22 HOH HOH . Z 6 HOH B 2 502 27 HOH HOH . Z 6 HOH B 3 503 26 HOH HOH . Z 6 HOH B 4 504 54 HOH HOH . Z 6 HOH B 5 505 5 HOH HOH . Z 6 HOH B 6 506 65 HOH HOH . Z 6 HOH B 7 507 68 HOH HOH . Z 6 HOH B 8 508 1 HOH HOH . Z 6 HOH B 9 509 69 HOH HOH . Z 6 HOH B 10 510 57 HOH HOH . Z 6 HOH B 11 511 124 HOH HOH . Z 6 HOH B 12 512 39 HOH HOH . Z 6 HOH B 13 513 3 HOH HOH . Z 6 HOH B 14 514 271 HOH HOH . Z 6 HOH B 15 515 108 HOH HOH . Z 6 HOH B 16 516 82 HOH HOH . AA 6 HOH C 1 501 369 HOH HOH . AA 6 HOH C 2 502 42 HOH HOH . AA 6 HOH C 3 503 381 HOH HOH . AA 6 HOH C 4 504 356 HOH HOH . AA 6 HOH C 5 505 52 HOH HOH . AA 6 HOH C 6 506 186 HOH HOH . AA 6 HOH C 7 507 94 HOH HOH . AA 6 HOH C 8 508 116 HOH HOH . AA 6 HOH C 9 509 84 HOH HOH . AA 6 HOH C 10 510 37 HOH HOH . AA 6 HOH C 11 511 12 HOH HOH . AA 6 HOH C 12 512 9 HOH HOH . BA 6 HOH E 1 501 16 HOH HOH . BA 6 HOH E 2 502 24 HOH HOH . BA 6 HOH E 3 503 123 HOH HOH . BA 6 HOH E 4 504 357 HOH HOH . BA 6 HOH E 5 505 100 HOH HOH . BA 6 HOH E 6 506 139 HOH HOH . BA 6 HOH E 7 507 104 HOH HOH . BA 6 HOH E 8 508 30 HOH HOH . BA 6 HOH E 9 509 202 HOH HOH . BA 6 HOH E 10 510 43 HOH HOH . BA 6 HOH E 11 511 70 HOH HOH . BA 6 HOH E 12 512 174 HOH HOH . BA 6 HOH E 13 513 60 HOH HOH . BA 6 HOH E 14 514 11 HOH HOH . BA 6 HOH E 15 515 99 HOH HOH . BA 6 HOH E 16 516 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . H 4 52.182 -24.14 35.909 1 84.27 ? C1 LMT 403 D 1 HETATM 2 C C2 LMT . . . H 4 52.704 -24.969 37.066 1 86.02 ? C2 LMT 403 D 1 HETATM 3 C C3 LMT . . . H 4 53.013 -24.201 38.357 1 84.78 ? C3 LMT 403 D 1 HETATM 4 C C4 LMT . . . H 4 53.827 -24.973 39.399 1 82.87 ? C4 LMT 403 D 1 HETATM 5 C C5 LMT . . . H 4 54.188 -24.179 40.653 1 84.35 ? C5 LMT 403 D 1 HETATM 6 C C6 LMT . . . H 4 55.093 -24.929 41.628 1 87.04 ? C6 LMT 403 D 1 HETATM 7 C C7 LMT . . . H 4 55.321 -24.289 42.992 1 87.26 ? C7 LMT 403 D 1 HETATM 8 C C8 LMT . . . H 4 56.155 -25.13 43.954 1 89.38 ? C8 LMT 403 D 1 HETATM 9 C C9 LMT . . . H 4 56.287 -24.517 45.353 1 91.89 ? C9 LMT 403 D 1 HETATM 10 C C10 LMT . . . H 4 57.402 -25.074 46.243 1 90.7 ? C10 LMT 403 D 1 HETATM 11 C C11 LMT . . . H 4 57.716 -24.204 47.465 1 94.06 ? C11 LMT 403 D 1 HETATM 12 C C12 LMT . . . H 4 58.908 -24.699 48.393 1 96.21 ? C12 LMT 403 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #