data_6I08 # _model_server_result.job_id cjrtuH42AtQk-VeN48_OAg _model_server_result.datetime_utc '2024-11-05 23:04:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":403}' # _entry.id 6I08 # _exptl.entry_id 6I08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.83 _cell.angle_gamma 90 _cell.entry_id 6I08 _cell.length_a 180.8 _cell.length_b 134.35 _cell.length_c 159.35 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 Q N N ? 5 T N N ? 5 W N N # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6I08 _atom_sites.fract_transf_matrix[1][1] 0.005531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CL D 1 401 318 CL CL . G 3 PLC D 1 402 320 PLC PLC . H 4 LMT D 1 403 318 LMT LMT . I 5 NA D 1 404 7 NA NA . J 2 CL A 1 401 318 CL CL . K 3 PLC A 1 402 320 PLC PLC . L 5 NA A 1 403 1 NA NA . M 5 NA A 1 404 2 NA NA . N 5 NA A 1 405 3 NA NA . O 2 CL B 1 401 318 CL CL . P 3 PLC B 1 402 320 PLC PLC . Q 5 NA B 1 403 6 NA NA . R 2 CL C 1 401 318 CL CL . S 3 PLC C 1 402 320 PLC PLC . T 5 NA C 1 403 4 NA NA . U 2 CL E 1 401 318 CL CL . V 3 PLC E 1 402 320 PLC PLC . W 5 NA E 1 403 5 NA NA . X 6 HOH D 1 501 47 HOH HOH . X 6 HOH D 2 502 366 HOH HOH . X 6 HOH D 3 503 496 HOH HOH . X 6 HOH D 4 504 25 HOH HOH . X 6 HOH D 5 505 200 HOH HOH . X 6 HOH D 6 506 64 HOH HOH . X 6 HOH D 7 507 32 HOH HOH . X 6 HOH D 8 508 19 HOH HOH . X 6 HOH D 9 509 358 HOH HOH . X 6 HOH D 10 510 110 HOH HOH . Y 6 HOH A 1 501 13 HOH HOH . Y 6 HOH A 2 502 66 HOH HOH . Y 6 HOH A 3 503 86 HOH HOH . Y 6 HOH A 4 504 230 HOH HOH . Y 6 HOH A 5 505 573 HOH HOH . Y 6 HOH A 6 506 2 HOH HOH . Y 6 HOH A 7 507 176 HOH HOH . Y 6 HOH A 8 508 71 HOH HOH . Y 6 HOH A 9 509 72 HOH HOH . Y 6 HOH A 10 510 77 HOH HOH . Y 6 HOH A 11 511 8 HOH HOH . Y 6 HOH A 12 512 169 HOH HOH . Y 6 HOH A 13 513 368 HOH HOH . Y 6 HOH A 14 514 10 HOH HOH . Y 6 HOH A 15 515 73 HOH HOH . Y 6 HOH A 16 516 89 HOH HOH . Y 6 HOH A 17 517 627 HOH HOH . Z 6 HOH B 1 501 22 HOH HOH . Z 6 HOH B 2 502 27 HOH HOH . Z 6 HOH B 3 503 26 HOH HOH . Z 6 HOH B 4 504 54 HOH HOH . Z 6 HOH B 5 505 5 HOH HOH . Z 6 HOH B 6 506 65 HOH HOH . Z 6 HOH B 7 507 68 HOH HOH . Z 6 HOH B 8 508 1 HOH HOH . Z 6 HOH B 9 509 69 HOH HOH . Z 6 HOH B 10 510 57 HOH HOH . Z 6 HOH B 11 511 124 HOH HOH . Z 6 HOH B 12 512 39 HOH HOH . Z 6 HOH B 13 513 3 HOH HOH . Z 6 HOH B 14 514 271 HOH HOH . Z 6 HOH B 15 515 108 HOH HOH . Z 6 HOH B 16 516 82 HOH HOH . AA 6 HOH C 1 501 369 HOH HOH . AA 6 HOH C 2 502 42 HOH HOH . AA 6 HOH C 3 503 381 HOH HOH . AA 6 HOH C 4 504 356 HOH HOH . AA 6 HOH C 5 505 52 HOH HOH . AA 6 HOH C 6 506 186 HOH HOH . AA 6 HOH C 7 507 94 HOH HOH . AA 6 HOH C 8 508 116 HOH HOH . AA 6 HOH C 9 509 84 HOH HOH . AA 6 HOH C 10 510 37 HOH HOH . AA 6 HOH C 11 511 12 HOH HOH . AA 6 HOH C 12 512 9 HOH HOH . BA 6 HOH E 1 501 16 HOH HOH . BA 6 HOH E 2 502 24 HOH HOH . BA 6 HOH E 3 503 123 HOH HOH . BA 6 HOH E 4 504 357 HOH HOH . BA 6 HOH E 5 505 100 HOH HOH . BA 6 HOH E 6 506 139 HOH HOH . BA 6 HOH E 7 507 104 HOH HOH . BA 6 HOH E 8 508 30 HOH HOH . BA 6 HOH E 9 509 202 HOH HOH . BA 6 HOH E 10 510 43 HOH HOH . BA 6 HOH E 11 511 70 HOH HOH . BA 6 HOH E 12 512 174 HOH HOH . BA 6 HOH E 13 513 60 HOH HOH . BA 6 HOH E 14 514 11 HOH HOH . BA 6 HOH E 15 515 99 HOH HOH . BA 6 HOH E 16 516 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 5 _atom_site.Cartn_x 30.121 _atom_site.Cartn_y -42.09 _atom_site.Cartn_z 4.901 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.68 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #