data_6I0B # _model_server_result.job_id N0a_ZPklhiqJe1ZU7w7Csg _model_server_result.datetime_utc '2024-12-30 18:20:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":611}' # _entry.id 6I0B # _exptl.entry_id 6I0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I0B _cell.length_a 154.351 _cell.length_b 154.351 _cell.length_c 128.039 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 3 n D NAG 1 D 1 NAG A 603 NAG 3 n D NAG 2 D 2 NAG A 607 NAG 3 n D FUC 3 D 3 FUC A 608 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 375 n n C1 O1 NAG sing 376 n n C1 O5 NAG sing 377 n n C1 H1 NAG sing 378 n n C2 C3 NAG sing 379 n n C2 N2 NAG sing 380 n n C2 H2 NAG sing 381 n n C3 C4 NAG sing 382 n n C3 O3 NAG sing 383 n n C3 H3 NAG sing 384 n n C4 C5 NAG sing 385 n n C4 O4 NAG sing 386 n n C4 H4 NAG sing 387 n n C5 C6 NAG sing 388 n n C5 O5 NAG sing 389 n n C5 H5 NAG sing 390 n n C6 O6 NAG sing 391 n n C6 H61 NAG sing 392 n n C6 H62 NAG sing 393 n n C7 C8 NAG sing 394 n n C7 N2 NAG sing 395 n n C7 O7 NAG doub 396 n n C8 H81 NAG sing 397 n n C8 H82 NAG sing 398 n n C8 H83 NAG sing 399 n n N2 HN2 NAG sing 400 n n O1 HO1 NAG sing 401 n n O3 HO3 NAG sing 402 n n O4 HO4 NAG sing 403 n n O6 HO6 NAG sing 404 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6I0B _atom_sites.fract_transf_matrix[1][1] 0.006479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 603 601 NAG NAG . F 4 NAG A 1 610 604 NAG NAG . G 4 NAG A 1 611 606 NAG NAG . H 5 MES A 1 612 701 MES MES . I 6 9A5 A 1 613 801 9A5 SKX . J 7 GOL A 1 614 1001 GOL GOL . K 7 GOL A 1 615 1101 GOL GOL . L 7 GOL A 1 616 1201 GOL GOL . M 8 SO4 A 1 617 1 SO4 SO4 . N 8 SO4 A 1 618 2 SO4 SO4 . O 8 SO4 A 1 619 3 SO4 SO4 . P 8 SO4 A 1 620 4 SO4 SO4 . Q 9 CL A 1 621 1 CL CL . R 10 HOH A 1 701 30 HOH HOH . R 10 HOH A 2 702 119 HOH HOH . R 10 HOH A 3 703 117 HOH HOH . R 10 HOH A 4 704 23 HOH HOH . R 10 HOH A 5 705 73 HOH HOH . R 10 HOH A 6 706 107 HOH HOH . R 10 HOH A 7 707 35 HOH HOH . R 10 HOH A 8 708 26 HOH HOH . R 10 HOH A 9 709 106 HOH HOH . R 10 HOH A 10 710 25 HOH HOH . R 10 HOH A 11 711 97 HOH HOH . R 10 HOH A 12 712 4 HOH HOH . R 10 HOH A 13 713 21 HOH HOH . R 10 HOH A 14 714 33 HOH HOH . R 10 HOH A 15 715 45 HOH HOH . R 10 HOH A 16 716 113 HOH HOH . R 10 HOH A 17 717 63 HOH HOH . R 10 HOH A 18 718 3 HOH HOH . R 10 HOH A 19 719 87 HOH HOH . R 10 HOH A 20 720 16 HOH HOH . R 10 HOH A 21 721 72 HOH HOH . R 10 HOH A 22 722 10 HOH HOH . R 10 HOH A 23 723 98 HOH HOH . R 10 HOH A 24 724 49 HOH HOH . R 10 HOH A 25 725 74 HOH HOH . R 10 HOH A 26 726 44 HOH HOH . R 10 HOH A 27 727 6 HOH HOH . R 10 HOH A 28 728 32 HOH HOH . R 10 HOH A 29 729 14 HOH HOH . R 10 HOH A 30 730 27 HOH HOH . R 10 HOH A 31 731 31 HOH HOH . R 10 HOH A 32 732 8 HOH HOH . R 10 HOH A 33 733 11 HOH HOH . R 10 HOH A 34 734 34 HOH HOH . R 10 HOH A 35 735 17 HOH HOH . R 10 HOH A 36 736 13 HOH HOH . R 10 HOH A 37 737 15 HOH HOH . R 10 HOH A 38 738 2 HOH HOH . R 10 HOH A 39 739 9 HOH HOH . R 10 HOH A 40 740 36 HOH HOH . R 10 HOH A 41 741 38 HOH HOH . R 10 HOH A 42 742 42 HOH HOH . R 10 HOH A 43 743 104 HOH HOH . R 10 HOH A 44 744 83 HOH HOH . R 10 HOH A 45 745 41 HOH HOH . R 10 HOH A 46 746 22 HOH HOH . R 10 HOH A 47 747 82 HOH HOH . R 10 HOH A 48 748 24 HOH HOH . R 10 HOH A 49 749 110 HOH HOH . R 10 HOH A 50 750 48 HOH HOH . R 10 HOH A 51 751 28 HOH HOH . R 10 HOH A 52 752 40 HOH HOH . R 10 HOH A 53 753 109 HOH HOH . R 10 HOH A 54 754 39 HOH HOH . R 10 HOH A 55 755 5 HOH HOH . R 10 HOH A 56 756 66 HOH HOH . R 10 HOH A 57 757 47 HOH HOH . R 10 HOH A 58 758 101 HOH HOH . R 10 HOH A 59 759 29 HOH HOH . R 10 HOH A 60 760 62 HOH HOH . R 10 HOH A 61 761 18 HOH HOH . R 10 HOH A 62 762 58 HOH HOH . R 10 HOH A 63 763 55 HOH HOH . R 10 HOH A 64 764 43 HOH HOH . R 10 HOH A 65 765 96 HOH HOH . R 10 HOH A 66 766 99 HOH HOH . R 10 HOH A 67 767 37 HOH HOH . R 10 HOH A 68 768 1 HOH HOH . R 10 HOH A 69 769 93 HOH HOH . R 10 HOH A 70 770 84 HOH HOH . R 10 HOH A 71 771 12 HOH HOH . R 10 HOH A 72 772 50 HOH HOH . R 10 HOH A 73 773 114 HOH HOH . R 10 HOH A 74 774 102 HOH HOH . R 10 HOH A 75 775 80 HOH HOH . R 10 HOH A 76 776 91 HOH HOH . R 10 HOH A 77 777 61 HOH HOH . R 10 HOH A 78 778 7 HOH HOH . R 10 HOH A 79 779 88 HOH HOH . R 10 HOH A 80 780 79 HOH HOH . R 10 HOH A 81 781 115 HOH HOH . R 10 HOH A 82 782 53 HOH HOH . R 10 HOH A 83 783 59 HOH HOH . R 10 HOH A 84 784 71 HOH HOH . R 10 HOH A 85 785 52 HOH HOH . R 10 HOH A 86 786 85 HOH HOH . R 10 HOH A 87 787 20 HOH HOH . R 10 HOH A 88 788 46 HOH HOH . R 10 HOH A 89 789 108 HOH HOH . R 10 HOH A 90 790 92 HOH HOH . R 10 HOH A 91 791 75 HOH HOH . R 10 HOH A 92 792 19 HOH HOH . R 10 HOH A 93 793 94 HOH HOH . R 10 HOH A 94 794 64 HOH HOH . R 10 HOH A 95 795 103 HOH HOH . R 10 HOH A 96 796 86 HOH HOH . R 10 HOH A 97 797 67 HOH HOH . R 10 HOH A 98 798 57 HOH HOH . R 10 HOH A 99 799 100 HOH HOH . R 10 HOH A 100 800 116 HOH HOH . R 10 HOH A 101 801 76 HOH HOH . R 10 HOH A 102 802 70 HOH HOH . R 10 HOH A 103 803 54 HOH HOH . R 10 HOH A 104 804 68 HOH HOH . R 10 HOH A 105 805 77 HOH HOH . R 10 HOH A 106 806 112 HOH HOH . R 10 HOH A 107 807 105 HOH HOH . R 10 HOH A 108 808 81 HOH HOH . R 10 HOH A 109 809 118 HOH HOH . R 10 HOH A 110 810 60 HOH HOH . R 10 HOH A 111 811 65 HOH HOH . R 10 HOH A 112 812 56 HOH HOH . R 10 HOH A 113 813 90 HOH HOH . R 10 HOH A 114 814 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 117.819 142.313 47.682 1 79.54 ? C1 NAG 611 A 1 HETATM 2 C C2 NAG . . . G 4 118.001 141.176 46.663 1 80.41 ? C2 NAG 611 A 1 HETATM 3 C C3 NAG . . . G 4 116.776 141.069 45.745 1 86.95 ? C3 NAG 611 A 1 HETATM 4 C C4 NAG . . . G 4 115.502 140.93 46.568 1 86.63 ? C4 NAG 611 A 1 HETATM 5 C C5 NAG . . . G 4 115.382 142.13 47.496 1 93.27 ? C5 NAG 611 A 1 HETATM 6 C C6 NAG . . . G 4 114.165 142.067 48.396 1 101.39 ? C6 NAG 611 A 1 HETATM 7 C C7 NAG . . . G 4 120.345 140.698 46.054 1 71.89 ? C7 NAG 611 A 1 HETATM 8 C C8 NAG . . . G 4 121.471 141.052 45.127 1 67.03 ? C8 NAG 611 A 1 HETATM 9 N N2 NAG . . . G 4 119.206 141.381 45.875 1 68 ? N2 NAG 611 A 1 HETATM 10 O O3 NAG . . . G 4 116.927 139.961 44.86 1 79.76 ? O3 NAG 611 A 1 HETATM 11 O O4 NAG . . . G 4 114.35 140.85 45.734 1 89.65 ? O4 NAG 611 A 1 HETATM 12 O O5 NAG . . . G 4 116.534 142.178 48.351 1 88.7 ? O5 NAG 611 A 1 HETATM 13 O O6 NAG . . . G 4 114.126 143.141 49.328 1 98.78 ? O6 NAG 611 A 1 HETATM 14 O O7 NAG . . . G 4 120.466 139.835 46.922 1 66.21 ? O7 NAG 611 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #