data_6I0C # _model_server_result.job_id VKDPUw9I-9Czrxia9HnpCg _model_server_result.datetime_utc '2024-10-11 00:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":613}' # _entry.id 6I0C # _exptl.entry_id 6I0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 518.093 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (2~{R})-2-azanyl-~{N}-[6-[(6-chloranyl-1,2,3,4-tetrahydroacridin-9-yl)amino]hexyl]-3-(1~{H}-indol-3-yl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I0C _cell.length_a 154.608 _cell.length_b 154.608 _cell.length_c 128.173 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B FUC 2 B 2 FUC A 609 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUC 3 C 3 FUC A 610 FUC 3 n D NAG 1 D 1 NAG A 603 NAG 3 n D NAG 2 D 2 NAG A 607 NAG 3 n D FUC 3 D 3 FUC A 608 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? metalc ? metalc1 A OD2 ASP 129 A ASP 129 1_555 N NA NA . A NA 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? # _chem_comp.formula 'C30 H36 Cl N5 O' _chem_comp.formula_weight 518.093 _chem_comp.id GZ5 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R})-2-azanyl-~{N}-[6-[(6-chloranyl-1,2,3,4-tetrahydroacridin-9-yl)amino]hexyl]-3-(1~{H}-indol-3-yl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 C23 GZ5 doub 152 n n C23 C24 GZ5 sing 153 n n C23 N22 GZ5 sing 154 n n C26 C24 GZ5 sing 155 n n C26 C27 GZ5 sing 156 n n C24 N25 GZ5 sing 157 n n C32 C33 GZ5 doub 158 n y C32 C31 GZ5 sing 159 n y C11 C12 GZ5 sing 160 n n C11 C10 GZ5 sing 161 n n C12 C13 GZ5 sing 162 n n N22 C21 GZ5 sing 163 n n C33 C34 GZ5 sing 164 n y C16 N15 GZ5 sing 165 n n C16 C17 GZ5 sing 166 n n C27 C31 GZ5 sing 167 n y C27 C28 GZ5 doub 168 n y C31 C30 GZ5 doub 169 n y N15 C14 GZ5 sing 170 n n C10 C09 GZ5 sing 171 n n C17 C18 GZ5 sing 172 n n C34 C35 GZ5 doub 173 n y C13 C14 GZ5 doub 174 n y C13 C08 GZ5 sing 175 n y C28 N29 GZ5 sing 176 n y C21 C20 GZ5 sing 177 n n C14 C05 GZ5 sing 178 n y C30 C35 GZ5 sing 179 n y C30 N29 GZ5 sing 180 n y C18 C19 GZ5 sing 181 n n C09 C08 GZ5 sing 182 n n C19 C20 GZ5 sing 183 n n C08 N07 GZ5 doub 184 n y C05 C04 GZ5 doub 185 n y C05 C06 GZ5 sing 186 n y C04 C03 GZ5 sing 187 n y N07 C06 GZ5 sing 188 n y C06 C37 GZ5 doub 189 n y C03 C02 GZ5 doub 190 n y C37 C02 GZ5 sing 191 n y C02 CL GZ5 sing 192 n n C03 H1 GZ5 sing 193 n n C04 H2 GZ5 sing 194 n n C09 H3 GZ5 sing 195 n n C09 H4 GZ5 sing 196 n n C10 H5 GZ5 sing 197 n n C10 H6 GZ5 sing 198 n n C11 H7 GZ5 sing 199 n n C11 H8 GZ5 sing 200 n n C12 H9 GZ5 sing 201 n n C12 H10 GZ5 sing 202 n n C16 H11 GZ5 sing 203 n n C16 H12 GZ5 sing 204 n n C17 H13 GZ5 sing 205 n n C17 H14 GZ5 sing 206 n n C18 H15 GZ5 sing 207 n n C18 H16 GZ5 sing 208 n n C19 H17 GZ5 sing 209 n n C19 H18 GZ5 sing 210 n n C20 H19 GZ5 sing 211 n n C20 H20 GZ5 sing 212 n n C21 H21 GZ5 sing 213 n n C21 H22 GZ5 sing 214 n n C24 H23 GZ5 sing 215 n n C26 H24 GZ5 sing 216 n n C26 H25 GZ5 sing 217 n n C28 H26 GZ5 sing 218 n n C32 H27 GZ5 sing 219 n n C33 H28 GZ5 sing 220 n n C34 H29 GZ5 sing 221 n n C35 H30 GZ5 sing 222 n n C37 H31 GZ5 sing 223 n n N15 H32 GZ5 sing 224 n n N22 H33 GZ5 sing 225 n n N25 H34 GZ5 sing 226 n n N25 H35 GZ5 sing 227 n n N29 H37 GZ5 sing 228 n n # _atom_sites.entry_id 6I0C _atom_sites.fract_transf_matrix[1][1] 0.006468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 603 601 NAG NAG . F 4 NAG A 1 610 604 NAG NAG . G 4 NAG A 1 611 606 NAG NAG . H 5 MES A 1 612 701 MES MES . I 6 GZ5 A 1 613 801 GZ5 RKX . J 7 SO4 A 1 614 1 SO4 SO4 . K 7 SO4 A 1 615 2 SO4 SO4 . L 7 SO4 A 1 616 3 SO4 SO4 . M 7 SO4 A 1 617 4 SO4 SO4 . N 8 NA A 1 618 1 NA NA . O 9 HOH A 1 701 34 HOH HOH . O 9 HOH A 2 702 30 HOH HOH . O 9 HOH A 3 703 16 HOH HOH . O 9 HOH A 4 704 170 HOH HOH . O 9 HOH A 5 705 168 HOH HOH . O 9 HOH A 6 706 83 HOH HOH . O 9 HOH A 7 707 37 HOH HOH . O 9 HOH A 8 708 3 HOH HOH . O 9 HOH A 9 709 169 HOH HOH . O 9 HOH A 10 710 54 HOH HOH . O 9 HOH A 11 711 45 HOH HOH . O 9 HOH A 12 712 172 HOH HOH . O 9 HOH A 13 713 163 HOH HOH . O 9 HOH A 14 714 26 HOH HOH . O 9 HOH A 15 715 171 HOH HOH . O 9 HOH A 16 716 165 HOH HOH . O 9 HOH A 17 717 41 HOH HOH . O 9 HOH A 18 718 50 HOH HOH . O 9 HOH A 19 719 35 HOH HOH . O 9 HOH A 20 720 173 HOH HOH . O 9 HOH A 21 721 166 HOH HOH . O 9 HOH A 22 722 107 HOH HOH . O 9 HOH A 23 723 31 HOH HOH . O 9 HOH A 24 724 164 HOH HOH . O 9 HOH A 25 725 72 HOH HOH . O 9 HOH A 26 726 131 HOH HOH . O 9 HOH A 27 727 11 HOH HOH . O 9 HOH A 28 728 43 HOH HOH . O 9 HOH A 29 729 53 HOH HOH . O 9 HOH A 30 730 73 HOH HOH . O 9 HOH A 31 731 174 HOH HOH . O 9 HOH A 32 732 167 HOH HOH . O 9 HOH A 33 733 9 HOH HOH . O 9 HOH A 34 734 5 HOH HOH . O 9 HOH A 35 735 12 HOH HOH . O 9 HOH A 36 736 1 HOH HOH . O 9 HOH A 37 737 20 HOH HOH . O 9 HOH A 38 738 22 HOH HOH . O 9 HOH A 39 739 64 HOH HOH . O 9 HOH A 40 740 8 HOH HOH . O 9 HOH A 41 741 91 HOH HOH . O 9 HOH A 42 742 104 HOH HOH . O 9 HOH A 43 743 76 HOH HOH . O 9 HOH A 44 744 21 HOH HOH . O 9 HOH A 45 745 159 HOH HOH . O 9 HOH A 46 746 57 HOH HOH . O 9 HOH A 47 747 84 HOH HOH . O 9 HOH A 48 748 63 HOH HOH . O 9 HOH A 49 749 162 HOH HOH . O 9 HOH A 50 750 92 HOH HOH . O 9 HOH A 51 751 61 HOH HOH . O 9 HOH A 52 752 106 HOH HOH . O 9 HOH A 53 753 111 HOH HOH . O 9 HOH A 54 754 90 HOH HOH . O 9 HOH A 55 755 78 HOH HOH . O 9 HOH A 56 756 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 GZ5 . . . I 6 130.062 113.579 44.357 1 46.7 ? C02 GZ5 613 A 1 HETATM 2 C C03 GZ5 . . . I 6 130.133 112.511 43.459 1 56.68 ? C03 GZ5 613 A 1 HETATM 3 C C04 GZ5 . . . I 6 130.768 112.706 42.268 1 53.7 ? C04 GZ5 613 A 1 HETATM 4 C C05 GZ5 . . . I 6 131.364 113.926 41.929 1 52.57 ? C05 GZ5 613 A 1 HETATM 5 C C06 GZ5 . . . I 6 131.291 114.985 42.87 1 54.81 ? C06 GZ5 613 A 1 HETATM 6 C C08 GZ5 . . . I 6 132.469 116.45 41.484 1 47.05 ? C08 GZ5 613 A 1 HETATM 7 C C09 GZ5 . . . I 6 133.051 117.828 41.343 1 47.79 ? C09 GZ5 613 A 1 HETATM 8 C C10 GZ5 . . . I 6 133.917 118.079 40.125 1 54.57 ? C10 GZ5 613 A 1 HETATM 9 C C11 GZ5 . . . I 6 133.397 117.3 38.917 1 55.71 ? C11 GZ5 613 A 1 HETATM 10 C C12 GZ5 . . . I 6 133.325 115.791 39.213 1 50.26 ? C12 GZ5 613 A 1 HETATM 11 C C13 GZ5 . . . I 6 132.604 115.436 40.462 1 53.1 ? C13 GZ5 613 A 1 HETATM 12 C C14 GZ5 . . . I 6 132.057 114.166 40.683 1 58.22 ? C14 GZ5 613 A 1 HETATM 13 C C16 GZ5 . . . I 6 133.309 112.344 39.412 1 50.82 ? C16 GZ5 613 A 1 HETATM 14 C C17 GZ5 . . . I 6 133.425 111.018 40.178 1 65.58 ? C17 GZ5 613 A 1 HETATM 15 C C18 GZ5 . . . I 6 134.702 110.856 41.069 1 68.44 ? C18 GZ5 613 A 1 HETATM 16 C C19 GZ5 . . . I 6 135.045 109.398 41.45 1 66 ? C19 GZ5 613 A 1 HETATM 17 C C20 GZ5 . . . I 6 136.522 109.1 41.65 1 69.71 ? C20 GZ5 613 A 1 HETATM 18 C C21 GZ5 . . . I 6 137.204 108.192 40.576 1 74.17 ? C21 GZ5 613 A 1 HETATM 19 C C23 GZ5 . . . I 6 138.101 109.41 38.392 1 81.33 ? C23 GZ5 613 A 1 HETATM 20 C C24 GZ5 . . . I 6 139.685 109.482 38.802 1 74.71 ? C24 GZ5 613 A 1 HETATM 21 C C26 GZ5 . . . I 6 140.3 110.847 38.434 1 68.43 ? C26 GZ5 613 A 1 HETATM 22 C C27 GZ5 . . . I 6 139.906 111.913 39.44 1 68.25 ? C27 GZ5 613 A 1 HETATM 23 C C28 GZ5 . . . I 6 140.709 112.373 40.476 1 69.38 ? C28 GZ5 613 A 1 HETATM 24 C C30 GZ5 . . . I 6 138.789 113.537 40.7 1 58.87 ? C30 GZ5 613 A 1 HETATM 25 C C31 GZ5 . . . I 6 138.662 112.648 39.569 1 65.62 ? C31 GZ5 613 A 1 HETATM 26 C C32 GZ5 . . . I 6 137.454 112.673 38.863 1 61.22 ? C32 GZ5 613 A 1 HETATM 27 C C33 GZ5 . . . I 6 136.457 113.545 39.264 1 62 ? C33 GZ5 613 A 1 HETATM 28 C C34 GZ5 . . . I 6 136.6 114.409 40.387 1 60.78 ? C34 GZ5 613 A 1 HETATM 29 C C35 GZ5 . . . I 6 137.769 114.418 41.121 1 51.54 ? C35 GZ5 613 A 1 HETATM 30 C C37 GZ5 . . . I 6 130.614 114.776 44.103 1 52.87 ? C37 GZ5 613 A 1 HETATM 31 N N07 GZ5 . . . I 6 131.845 116.238 42.634 1 51.97 ? N07 GZ5 613 A 1 HETATM 32 N N15 GZ5 . . . I 6 132.144 113.121 39.725 1 64.48 ? N15 GZ5 613 A 1 HETATM 33 N N22 GZ5 . . . I 6 137.091 108.821 39.238 1 81.49 ? N22 GZ5 613 A 1 HETATM 34 N N25 GZ5 . . . I 6 139.949 109.311 40.233 1 70.01 ? N25 GZ5 613 A 1 HETATM 35 N N29 GZ5 . . . I 6 140.053 113.346 41.237 1 61.58 ? N29 GZ5 613 A 1 HETATM 36 O O36 GZ5 . . . I 6 137.765 109.877 37.315 1 85.57 ? O36 GZ5 613 A 1 HETATM 37 CL CL GZ5 . . . I 6 129.243 113.323 45.822 1 54.7 ? CL GZ5 613 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #