data_6I0M # _model_server_result.job_id 38-FXFchvTTvp4PTUVpr6Q _model_server_result.datetime_utc '2024-11-30 04:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":601}' # _entry.id 6I0M # _exptl.entry_id 6I0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I0M _cell.length_a 134.729 _cell.length_b 134.729 _cell.length_c 324.081 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_795 -x+2,-y+4,z -1 0 0 0 -1 0 0 0 1 269.458 538.916 0 3 'crystal symmetry operation' 3_865 -y+3,x+1,z 0 -1 0 1 0 0 0 0 1 404.187 134.729 0 4 'crystal symmetry operation' 4_485 y-1,-x+3,z 0 1 0 -1 0 0 0 0 1 -134.729 404.187 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 N N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 6I0M _atom_sites.fract_transf_matrix[1][1] 0.007422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 601 600 5GP 5GP . D 3 GDP A 1 602 601 GDP GDP . E 3 GDP A 1 603 602 GDP GDP . F 3 GDP A 1 604 603 GDP GDP . G 4 SO4 A 1 605 1 SO4 SO4 . H 4 SO4 A 1 606 3 SO4 SO4 . I 4 SO4 A 1 607 4 SO4 SO4 . J 4 SO4 A 1 608 5 SO4 SO4 . K 4 SO4 A 1 609 6 SO4 SO4 . L 4 SO4 A 1 610 7 SO4 SO4 . M 4 SO4 A 1 611 10 SO4 SO4 . N 2 5GP B 1 601 600 5GP 5GP . O 3 GDP B 1 602 601 GDP GDP . P 3 GDP B 1 603 602 GDP GDP . Q 3 GDP B 1 604 603 GDP GDP . R 4 SO4 B 1 605 2 SO4 SO4 . S 4 SO4 B 1 606 8 SO4 SO4 . T 4 SO4 B 1 607 9 SO4 SO4 . U 5 HOH A 1 701 41 HOH HOH . U 5 HOH A 2 702 46 HOH HOH . U 5 HOH A 3 703 2 HOH HOH . U 5 HOH A 4 704 17 HOH HOH . U 5 HOH A 5 705 74 HOH HOH . U 5 HOH A 6 706 13 HOH HOH . U 5 HOH A 7 707 48 HOH HOH . U 5 HOH A 8 708 4 HOH HOH . U 5 HOH A 9 709 28 HOH HOH . U 5 HOH A 10 710 79 HOH HOH . U 5 HOH A 11 711 12 HOH HOH . U 5 HOH A 12 712 3 HOH HOH . U 5 HOH A 13 713 16 HOH HOH . U 5 HOH A 14 714 30 HOH HOH . U 5 HOH A 15 715 39 HOH HOH . U 5 HOH A 16 716 38 HOH HOH . U 5 HOH A 17 717 14 HOH HOH . U 5 HOH A 18 718 75 HOH HOH . U 5 HOH A 19 719 44 HOH HOH . U 5 HOH A 20 720 37 HOH HOH . U 5 HOH A 21 721 26 HOH HOH . U 5 HOH A 22 722 90 HOH HOH . U 5 HOH A 23 723 9 HOH HOH . U 5 HOH A 24 724 18 HOH HOH . U 5 HOH A 25 725 92 HOH HOH . U 5 HOH A 26 726 96 HOH HOH . U 5 HOH A 27 727 47 HOH HOH . U 5 HOH A 28 728 97 HOH HOH . U 5 HOH A 29 729 78 HOH HOH . U 5 HOH A 30 730 29 HOH HOH . U 5 HOH A 31 731 21 HOH HOH . U 5 HOH A 32 732 25 HOH HOH . U 5 HOH A 33 733 32 HOH HOH . U 5 HOH A 34 734 76 HOH HOH . U 5 HOH A 35 735 91 HOH HOH . U 5 HOH A 36 736 35 HOH HOH . U 5 HOH A 37 737 83 HOH HOH . U 5 HOH A 38 738 15 HOH HOH . U 5 HOH A 39 739 20 HOH HOH . U 5 HOH A 40 740 22 HOH HOH . U 5 HOH A 41 741 100 HOH HOH . U 5 HOH A 42 742 111 HOH HOH . U 5 HOH A 43 743 40 HOH HOH . U 5 HOH A 44 744 33 HOH HOH . U 5 HOH A 45 745 36 HOH HOH . U 5 HOH A 46 746 27 HOH HOH . U 5 HOH A 47 747 19 HOH HOH . U 5 HOH A 48 748 94 HOH HOH . U 5 HOH A 49 749 77 HOH HOH . U 5 HOH A 50 750 43 HOH HOH . U 5 HOH A 51 751 95 HOH HOH . U 5 HOH A 52 752 98 HOH HOH . U 5 HOH A 53 753 93 HOH HOH . V 5 HOH B 1 701 8 HOH HOH . V 5 HOH B 2 702 89 HOH HOH . V 5 HOH B 3 703 10 HOH HOH . V 5 HOH B 4 704 88 HOH HOH . V 5 HOH B 5 705 81 HOH HOH . V 5 HOH B 6 706 87 HOH HOH . V 5 HOH B 7 707 106 HOH HOH . V 5 HOH B 8 708 67 HOH HOH . V 5 HOH B 9 709 86 HOH HOH . V 5 HOH B 10 710 24 HOH HOH . V 5 HOH B 11 711 105 HOH HOH . V 5 HOH B 12 712 64 HOH HOH . V 5 HOH B 13 713 65 HOH HOH . V 5 HOH B 14 714 53 HOH HOH . V 5 HOH B 15 715 54 HOH HOH . V 5 HOH B 16 716 112 HOH HOH . V 5 HOH B 17 717 68 HOH HOH . V 5 HOH B 18 718 108 HOH HOH . V 5 HOH B 19 719 107 HOH HOH . V 5 HOH B 20 720 110 HOH HOH . V 5 HOH B 21 721 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . N 2 145.659 289.334 354.165 1 96.57 ? P 5GP 601 B 1 HETATM 2 O O1P 5GP . . . N 2 147.001 288.869 353.687 1 95.86 ? O1P 5GP 601 B 1 HETATM 3 O O2P 5GP . . . N 2 144.507 288.461 353.765 1 98.91 ? O2P 5GP 601 B 1 HETATM 4 O O3P 5GP . . . N 2 145.624 289.778 355.596 1 96.38 ? O3P 5GP 601 B 1 HETATM 5 O O5' 5GP . . . N 2 145.397 290.681 353.35 1 99.98 ? O5' 5GP 601 B 1 HETATM 6 C C5' 5GP . . . N 2 144.214 291.416 353.632 1 102.6 ? C5' 5GP 601 B 1 HETATM 7 C C4' 5GP . . . N 2 143.885 292.366 352.491 1 102.15 ? C4' 5GP 601 B 1 HETATM 8 O O4' 5GP . . . N 2 142.472 292.538 352.426 1 102.48 ? O4' 5GP 601 B 1 HETATM 9 C C3' 5GP . . . N 2 144.492 293.747 352.68 1 99.98 ? C3' 5GP 601 B 1 HETATM 10 O O3' 5GP . . . N 2 145.723 293.893 351.964 1 93.75 ? O3' 5GP 601 B 1 HETATM 11 C C2' 5GP . . . N 2 143.424 294.71 352.196 1 104.12 ? C2' 5GP 601 B 1 HETATM 12 O O2' 5GP . . . N 2 143.705 295.2 350.885 1 107.65 ? O2' 5GP 601 B 1 HETATM 13 C C1' 5GP . . . N 2 142.138 293.9 352.162 1 103.77 ? C1' 5GP 601 B 1 HETATM 14 N N9 5GP . . . N 2 141.153 294.376 353.166 1 102.78 ? N9 5GP 601 B 1 HETATM 15 C C8 5GP . . . N 2 141.419 295.033 354.309 1 102.15 ? C8 5GP 601 B 1 HETATM 16 N N7 5GP . . . N 2 140.275 295.313 354.98 1 101.71 ? N7 5GP 601 B 1 HETATM 17 C C5 5GP . . . N 2 139.253 294.829 354.261 1 101.27 ? C5 5GP 601 B 1 HETATM 18 C C6 5GP . . . N 2 137.783 294.781 354.394 1 99.77 ? C6 5GP 601 B 1 HETATM 19 O O6 5GP . . . N 2 137.211 295.281 355.382 1 95.33 ? O6 5GP 601 B 1 HETATM 20 N N1 5GP . . . N 2 137.081 294.185 353.426 1 104.38 ? N1 5GP 601 B 1 HETATM 21 C C2 5GP . . . N 2 137.677 293.639 352.353 1 108.54 ? C2 5GP 601 B 1 HETATM 22 N N2 5GP . . . N 2 136.906 293.05 351.41 1 113.3 ? N2 5GP 601 B 1 HETATM 23 N N3 5GP . . . N 2 139.017 293.647 352.167 1 105.97 ? N3 5GP 601 B 1 HETATM 24 C C4 5GP . . . N 2 139.838 294.22 353.068 1 102.63 ? C4 5GP 601 B 1 HETATM 25 H "H5'1" 5GP . . . N 2 143.382 290.725 353.782 1 123.57 ? "H5'1" 5GP 601 B 1 HETATM 26 H "H5'2" 5GP . . . N 2 144.349 291.986 354.553 1 123.57 ? "H5'2" 5GP 601 B 1 HETATM 27 H H4' 5GP . . . N 2 144.256 291.938 351.55 1 123.03 ? H4' 5GP 601 B 1 HETATM 28 H H3' 5GP . . . N 2 144.66 293.915 353.753 1 120.42 ? H3' 5GP 601 B 1 HETATM 29 H H2' 5GP . . . N 2 143.336 295.546 352.903 1 125.4 ? H2' 5GP 601 B 1 HETATM 30 H HO2' 5GP . . . N 2 144.553 295.664 350.889 1 129.63 ? HO2' 5GP 601 B 1 HETATM 31 H H1' 5GP . . . N 2 141.705 293.982 351.156 1 124.97 ? H1' 5GP 601 B 1 HETATM 32 H H8 5GP . . . N 2 142.412 295.304 354.647 1 123.03 ? H8 5GP 601 B 1 HETATM 33 H HN1 5GP . . . N 2 136.045 294.143 353.505 1 125.7 ? HN1 5GP 601 B 1 HETATM 34 H HN21 5GP . . . N 2 135.903 293.028 351.519 1 136.41 ? HN21 5GP 601 B 1 HETATM 35 H HN22 5GP . . . N 2 137.335 292.633 350.595 1 136.41 ? HN22 5GP 601 B 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #