data_6I0N # _model_server_result.job_id G2oJ3D5HqxOA8pJh4EfgtQ _model_server_result.datetime_utc '2025-03-09 01:51:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6I0N # _exptl.entry_id 6I0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.255 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I0N _cell.length_a 67.133 _cell.length_b 68.424 _cell.length_c 38.863 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 AMU NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG AMU C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 402 NAG 2 n B AMU 2 B 2 AMU A 403 AMU 2 n B NAG 3 B 3 NAG A 404 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 AH0 . A AH0 401 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 AMU . B AMU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale3 B O4 AMU . B AMU 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C11 H17 N O7' _chem_comp.formula_weight 275.255 _chem_comp.id AH0 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,6-anhydro-N-acetylmuramic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AH0 sing 1 n n C1 O5 AH0 sing 2 n n C1 O6 AH0 sing 3 n n C1 H1 AH0 sing 4 n n C2 N2 AH0 sing 5 n n C2 C3 AH0 sing 6 n n C2 H2 AH0 sing 7 n n N2 C7 AH0 sing 8 n n N2 HN2 AH0 sing 9 n n C7 O7 AH0 doub 10 n n C7 C8 AH0 sing 11 n n C8 H81 AH0 sing 12 n n C8 H82 AH0 sing 13 n n C8 H83 AH0 sing 14 n n C3 O3 AH0 sing 15 n n C3 C4 AH0 sing 16 n n C3 H3 AH0 sing 17 n n O3 CA AH0 sing 18 n n C4 O4 AH0 sing 19 n n C4 C5 AH0 sing 20 n n C4 H4 AH0 sing 21 n n O4 HO4 AH0 sing 22 n n C5 O5 AH0 sing 23 n n C5 C6 AH0 sing 24 n n C5 H5 AH0 sing 25 n n C6 O6 AH0 sing 26 n n C6 H61 AH0 sing 27 n n C6 H62 AH0 sing 28 n n CA CB AH0 sing 29 n n CA C AH0 sing 30 n n CA HA AH0 sing 31 n n CB HB1 AH0 sing 32 n n CB HB2 AH0 sing 33 n n CB HB3 AH0 sing 34 n n C O AH0 doub 35 n n C OXT AH0 sing 36 n n OXT HXT AH0 sing 37 n n # _atom_sites.entry_id 6I0N _atom_sites.fract_transf_matrix[1][1] 0.014896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AH0 A 1 401 401 AH0 AH0 . D 4 HOH A 1 501 582 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 501 HOH HOH . D 4 HOH A 4 504 507 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 512 HOH HOH . D 4 HOH A 7 507 511 HOH HOH . D 4 HOH A 8 508 509 HOH HOH . D 4 HOH A 9 509 521 HOH HOH . D 4 HOH A 10 510 524 HOH HOH . D 4 HOH A 11 511 513 HOH HOH . D 4 HOH A 12 512 515 HOH HOH . D 4 HOH A 13 513 506 HOH HOH . D 4 HOH A 14 514 536 HOH HOH . D 4 HOH A 15 515 510 HOH HOH . D 4 HOH A 16 516 527 HOH HOH . D 4 HOH A 17 517 514 HOH HOH . D 4 HOH A 18 518 528 HOH HOH . D 4 HOH A 19 519 518 HOH HOH . D 4 HOH A 20 520 516 HOH HOH . D 4 HOH A 21 521 517 HOH HOH . D 4 HOH A 22 522 519 HOH HOH . D 4 HOH A 23 523 520 HOH HOH . D 4 HOH A 24 524 535 HOH HOH . D 4 HOH A 25 525 522 HOH HOH . D 4 HOH A 26 526 526 HOH HOH . D 4 HOH A 27 527 530 HOH HOH . D 4 HOH A 28 528 523 HOH HOH . D 4 HOH A 29 529 531 HOH HOH . D 4 HOH A 30 530 537 HOH HOH . D 4 HOH A 31 531 533 HOH HOH . D 4 HOH A 32 532 555 HOH HOH . D 4 HOH A 33 533 547 HOH HOH . D 4 HOH A 34 534 529 HOH HOH . D 4 HOH A 35 535 548 HOH HOH . D 4 HOH A 36 536 532 HOH HOH . D 4 HOH A 37 537 538 HOH HOH . D 4 HOH A 38 538 541 HOH HOH . D 4 HOH A 39 539 558 HOH HOH . D 4 HOH A 40 540 549 HOH HOH . D 4 HOH A 41 541 540 HOH HOH . D 4 HOH A 42 542 539 HOH HOH . D 4 HOH A 43 543 543 HOH HOH . D 4 HOH A 44 544 544 HOH HOH . D 4 HOH A 45 545 546 HOH HOH . D 4 HOH A 46 546 542 HOH HOH . D 4 HOH A 47 547 534 HOH HOH . D 4 HOH A 48 548 550 HOH HOH . D 4 HOH A 49 549 552 HOH HOH . D 4 HOH A 50 550 525 HOH HOH . D 4 HOH A 51 551 545 HOH HOH . D 4 HOH A 52 552 551 HOH HOH . D 4 HOH A 53 553 559 HOH HOH . D 4 HOH A 54 554 561 HOH HOH . D 4 HOH A 55 555 562 HOH HOH . D 4 HOH A 56 556 503 HOH HOH . D 4 HOH A 57 557 560 HOH HOH . D 4 HOH A 58 558 554 HOH HOH . D 4 HOH A 59 559 556 HOH HOH . D 4 HOH A 60 560 553 HOH HOH . D 4 HOH A 61 561 557 HOH HOH . D 4 HOH A 62 562 565 HOH HOH . D 4 HOH A 63 563 569 HOH HOH . D 4 HOH A 64 564 563 HOH HOH . D 4 HOH A 65 565 568 HOH HOH . D 4 HOH A 66 566 566 HOH HOH . D 4 HOH A 67 567 570 HOH HOH . D 4 HOH A 68 568 564 HOH HOH . D 4 HOH A 69 569 572 HOH HOH . D 4 HOH A 70 570 571 HOH HOH . D 4 HOH A 71 571 573 HOH HOH . D 4 HOH A 72 572 578 HOH HOH . D 4 HOH A 73 573 575 HOH HOH . D 4 HOH A 74 574 574 HOH HOH . D 4 HOH A 75 575 576 HOH HOH . D 4 HOH A 76 576 577 HOH HOH . D 4 HOH A 77 577 580 HOH HOH . D 4 HOH A 78 578 583 HOH HOH . D 4 HOH A 79 579 579 HOH HOH . D 4 HOH A 80 580 585 HOH HOH . D 4 HOH A 81 581 584 HOH HOH . D 4 HOH A 82 582 587 HOH HOH . D 4 HOH A 83 583 586 HOH HOH . D 4 HOH A 84 584 588 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AH0 . . . C 3 20.729 47.556 -8.383 1 107.46 ? C1 AH0 401 A 1 HETATM 2 C C2 AH0 . . . C 3 19.775 47.57 -7.161 1 86.64 ? C2 AH0 401 A 1 HETATM 3 N N2 AH0 . . . C 3 20.178 48.638 -6.257 1 97.96 ? N2 AH0 401 A 1 HETATM 4 C C7 AH0 . . . C 3 19.329 49.264 -5.394 1 88.77 ? C7 AH0 401 A 1 HETATM 5 O O7 AH0 . . . C 3 18.133 49 -5.332 1 86.89 ? O7 AH0 401 A 1 HETATM 6 C C8 AH0 . . . C 3 19.959 50.304 -4.535 1 79.92 ? C8 AH0 401 A 1 HETATM 7 C C3 AH0 . . . C 3 19.819 46.217 -6.388 1 80.71 ? C3 AH0 401 A 1 HETATM 8 O O3 AH0 . . . C 3 18.845 45.269 -6.895 1 77.66 ? O3 AH0 401 A 1 HETATM 9 C C4 AH0 . . . C 3 21.253 45.612 -6.403 1 93.61 ? C4 AH0 401 A 1 HETATM 10 O O4 AH0 . . . C 3 21.991 46.16 -5.285 1 54.15 ? O4 AH0 401 A 1 HETATM 11 C C5 AH0 . . . C 3 22.038 45.902 -7.707 1 90.57 ? C5 AH0 401 A 1 HETATM 12 O O5 AH0 . . . C 3 22.077 47.322 -7.937 1 97.05 ? O5 AH0 401 A 1 HETATM 13 C C6 AH0 . . . C 3 21.346 45.416 -8.961 1 96.6 ? C6 AH0 401 A 1 HETATM 14 O O6 AH0 . . . C 3 20.409 46.467 -9.272 1 126.28 ? O6 AH0 401 A 1 HETATM 15 C CA AH0 . . . C 3 17.643 44.992 -6.101 1 99.68 ? CA AH0 401 A 1 HETATM 16 C CB AH0 . . . C 3 17.479 46.02 -4.984 1 89.47 ? CB AH0 401 A 1 HETATM 17 C C AH0 . . . C 3 17.611 43.53 -5.569 1 140.7 ? C AH0 401 A 1 HETATM 18 O O AH0 . . . C 3 18.704 42.903 -5.508 1 145.33 ? O AH0 401 A 1 HETATM 19 O OXT AH0 . . . C 3 16.471 43.092 -5.225 1 127.04 -1 OXT AH0 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #