data_6I0O # _model_server_result.job_id pDIfmX_sp7_P0KmSqizgoQ _model_server_result.datetime_utc '2024-10-18 15:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6I0O # _exptl.entry_id 6I0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I0O _cell.length_a 134.119 _cell.length_b 134.119 _cell.length_c 325.703 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -134.119 -134.119 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -134.119 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -134.119 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 6I0O _atom_sites.fract_transf_matrix[1][1] 0.007456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 601 601 GTP GTP . D 2 GTP A 1 602 602 GTP GTP . E 2 GTP A 1 603 603 GTP GTP . F 3 SO4 A 1 604 2 SO4 SO4 . G 3 SO4 A 1 605 3 SO4 SO4 . H 3 SO4 A 1 606 4 SO4 SO4 . I 3 SO4 A 1 607 5 SO4 SO4 . J 3 SO4 A 1 608 6 SO4 SO4 . K 3 SO4 A 1 609 7 SO4 SO4 . L 3 SO4 A 1 610 8 SO4 SO4 . M 3 SO4 A 1 611 9 SO4 SO4 . N 3 SO4 A 1 612 10 SO4 SO4 . O 3 SO4 A 1 613 11 SO4 SO4 . P 2 GTP B 1 601 601 GTP GTP . Q 2 GTP B 1 602 602 GTP GTP . R 2 GTP B 1 603 603 GTP GTP . S 3 SO4 B 1 604 1 SO4 SO4 . T 3 SO4 B 1 605 12 SO4 SO4 . U 3 SO4 B 1 606 13 SO4 SO4 . V 3 SO4 B 1 607 14 SO4 SO4 . W 3 SO4 B 1 608 15 SO4 SO4 . X 3 SO4 B 1 609 16 SO4 SO4 . Y 3 SO4 B 1 610 17 SO4 SO4 . Z 3 SO4 B 1 611 18 SO4 SO4 . AA 3 SO4 B 1 612 19 SO4 SO4 . BA 3 SO4 B 1 613 20 SO4 SO4 . CA 3 SO4 B 1 614 21 SO4 SO4 . DA 3 SO4 B 1 615 22 SO4 SO4 . EA 3 SO4 B 1 616 24 SO4 SO4 . FA 3 SO4 B 1 617 25 SO4 SO4 . GA 3 SO4 B 1 618 26 SO4 SO4 . HA 3 SO4 B 1 619 27 SO4 SO4 . IA 4 HOH A 1 701 19 HOH HOH . IA 4 HOH A 2 702 34 HOH HOH . IA 4 HOH A 3 703 8 HOH HOH . IA 4 HOH A 4 704 30 HOH HOH . IA 4 HOH A 5 705 7 HOH HOH . IA 4 HOH A 6 706 39 HOH HOH . IA 4 HOH A 7 707 37 HOH HOH . IA 4 HOH A 8 708 21 HOH HOH . IA 4 HOH A 9 709 17 HOH HOH . IA 4 HOH A 10 710 72 HOH HOH . IA 4 HOH A 11 711 75 HOH HOH . IA 4 HOH A 12 712 36 HOH HOH . IA 4 HOH A 13 713 41 HOH HOH . IA 4 HOH A 14 714 35 HOH HOH . IA 4 HOH A 15 715 67 HOH HOH . IA 4 HOH A 16 716 29 HOH HOH . IA 4 HOH A 17 717 66 HOH HOH . IA 4 HOH A 18 718 42 HOH HOH . IA 4 HOH A 19 719 32 HOH HOH . IA 4 HOH A 20 720 71 HOH HOH . IA 4 HOH A 21 721 76 HOH HOH . IA 4 HOH A 22 722 43 HOH HOH . IA 4 HOH A 23 723 73 HOH HOH . IA 4 HOH A 24 724 70 HOH HOH . IA 4 HOH A 25 725 68 HOH HOH . IA 4 HOH A 26 726 69 HOH HOH . IA 4 HOH A 27 727 74 HOH HOH . IA 4 HOH A 28 728 38 HOH HOH . IA 4 HOH A 29 729 93 HOH HOH . IA 4 HOH A 30 730 77 HOH HOH . JA 4 HOH B 1 701 15 HOH HOH . JA 4 HOH B 2 702 50 HOH HOH . JA 4 HOH B 3 703 2 HOH HOH . JA 4 HOH B 4 704 64 HOH HOH . JA 4 HOH B 5 705 62 HOH HOH . JA 4 HOH B 6 706 20 HOH HOH . JA 4 HOH B 7 707 11 HOH HOH . JA 4 HOH B 8 708 1 HOH HOH . JA 4 HOH B 9 709 6 HOH HOH . JA 4 HOH B 10 710 47 HOH HOH . JA 4 HOH B 11 711 25 HOH HOH . JA 4 HOH B 12 712 13 HOH HOH . JA 4 HOH B 13 713 27 HOH HOH . JA 4 HOH B 14 714 61 HOH HOH . JA 4 HOH B 15 715 18 HOH HOH . JA 4 HOH B 16 716 46 HOH HOH . JA 4 HOH B 17 717 84 HOH HOH . JA 4 HOH B 18 718 10 HOH HOH . JA 4 HOH B 19 719 51 HOH HOH . JA 4 HOH B 20 720 59 HOH HOH . JA 4 HOH B 21 721 91 HOH HOH . JA 4 HOH B 22 722 44 HOH HOH . JA 4 HOH B 23 723 9 HOH HOH . JA 4 HOH B 24 724 5 HOH HOH . JA 4 HOH B 25 725 40 HOH HOH . JA 4 HOH B 26 726 81 HOH HOH . JA 4 HOH B 27 727 33 HOH HOH . JA 4 HOH B 28 728 86 HOH HOH . JA 4 HOH B 29 729 53 HOH HOH . JA 4 HOH B 30 730 14 HOH HOH . JA 4 HOH B 31 731 26 HOH HOH . JA 4 HOH B 32 732 48 HOH HOH . JA 4 HOH B 33 733 45 HOH HOH . JA 4 HOH B 34 734 23 HOH HOH . JA 4 HOH B 35 735 54 HOH HOH . JA 4 HOH B 36 736 49 HOH HOH . JA 4 HOH B 37 737 88 HOH HOH . JA 4 HOH B 38 738 89 HOH HOH . JA 4 HOH B 39 739 87 HOH HOH . JA 4 HOH B 40 740 60 HOH HOH . JA 4 HOH B 41 741 83 HOH HOH . JA 4 HOH B 42 742 28 HOH HOH . JA 4 HOH B 43 743 92 HOH HOH . JA 4 HOH B 44 744 80 HOH HOH . JA 4 HOH B 45 745 79 HOH HOH . JA 4 HOH B 46 746 78 HOH HOH . JA 4 HOH B 47 747 24 HOH HOH . JA 4 HOH B 48 748 90 HOH HOH . JA 4 HOH B 49 749 85 HOH HOH . JA 4 HOH B 50 750 22 HOH HOH . JA 4 HOH B 51 751 56 HOH HOH . JA 4 HOH B 52 752 82 HOH HOH . JA 4 HOH B 53 753 4 HOH HOH . JA 4 HOH B 54 754 52 HOH HOH . JA 4 HOH B 55 755 55 HOH HOH . JA 4 HOH B 56 756 63 HOH HOH . JA 4 HOH B 57 757 57 HOH HOH . JA 4 HOH B 58 758 3 HOH HOH . JA 4 HOH B 59 759 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 2 -28.929 -28.114 -47.278 1 127.74 ? PG GTP 602 A 1 HETATM 2 O O1G GTP . . . D 2 -28.98 -29.308 -48.208 1 126.7 ? O1G GTP 602 A 1 HETATM 3 O O2G GTP . . . D 2 -28.942 -26.846 -48.101 1 128.77 ? O2G GTP 602 A 1 HETATM 4 O O3G GTP . . . D 2 -30.136 -28.133 -46.366 1 131.97 ? O3G GTP 602 A 1 HETATM 5 O O3B GTP . . . D 2 -27.547 -28.168 -46.369 1 111.68 ? O3B GTP 602 A 1 HETATM 6 P PB GTP . . . D 2 -27.427 -27.677 -44.792 1 95.05 ? PB GTP 602 A 1 HETATM 7 O O1B GTP . . . D 2 -27.919 -26.258 -44.636 1 94.51 ? O1B GTP 602 A 1 HETATM 8 O O2B GTP . . . D 2 -25.983 -27.741 -44.354 1 95.36 ? O2B GTP 602 A 1 HETATM 9 O O3A GTP . . . D 2 -28.324 -28.669 -43.822 1 91.48 ? O3A GTP 602 A 1 HETATM 10 P PA GTP . . . D 2 -29.626 -28.146 -42.948 1 87.75 ? PA GTP 602 A 1 HETATM 11 O O1A GTP . . . D 2 -30.88 -28.296 -43.782 1 85.11 ? O1A GTP 602 A 1 HETATM 12 O O2A GTP . . . D 2 -29.442 -26.692 -42.575 1 85.46 ? O2A GTP 602 A 1 HETATM 13 O O5' GTP . . . D 2 -29.754 -29.054 -41.564 1 89.61 ? O5' GTP 602 A 1 HETATM 14 C C5' GTP . . . D 2 -29.16 -30.336 -41.52 1 91.79 ? C5' GTP 602 A 1 HETATM 15 C C4' GTP . . . D 2 -29.534 -31.04 -40.172 1 94.51 ? C4' GTP 602 A 1 HETATM 16 O O4' GTP . . . D 2 -28.681 -31.994 -39.911 1 95.95 ? O4' GTP 602 A 1 HETATM 17 C C3' GTP . . . D 2 -29.446 -30.036 -39.006 1 95.49 ? C3' GTP 602 A 1 HETATM 18 O O3' GTP . . . D 2 -30.481 -30.217 -38.143 1 96.31 ? O3' GTP 602 A 1 HETATM 19 C C2' GTP . . . D 2 -28.111 -30.34 -38.298 1 96.56 ? C2' GTP 602 A 1 HETATM 20 O O2' GTP . . . D 2 -28.3 -30.276 -36.811 1 96.43 ? O2' GTP 602 A 1 HETATM 21 C C1' GTP . . . D 2 -27.766 -31.545 -38.651 1 97.05 ? C1' GTP 602 A 1 HETATM 22 N N9 GTP . . . D 2 -26.376 -31.509 -39.057 1 98.51 ? N9 GTP 602 A 1 HETATM 23 C C8 GTP . . . D 2 -25.996 -32.555 -38.291 1 98.68 ? C8 GTP 602 A 1 HETATM 24 N N7 GTP . . . D 2 -24.67 -32.755 -38.479 1 98.01 ? N7 GTP 602 A 1 HETATM 25 C C5 GTP . . . D 2 -24.237 -31.843 -39.35 1 98.4 ? C5 GTP 602 A 1 HETATM 26 C C6 GTP . . . D 2 -22.85 -31.561 -39.952 1 103.21 ? C6 GTP 602 A 1 HETATM 27 O O6 GTP . . . D 2 -21.919 -32.231 -39.648 1 105.42 ? O6 GTP 602 A 1 HETATM 28 N N1 GTP . . . D 2 -22.684 -30.487 -40.887 1 105.39 ? N1 GTP 602 A 1 HETATM 29 C C2 GTP . . . D 2 -23.824 -29.677 -41.254 1 107.7 ? C2 GTP 602 A 1 HETATM 30 N N2 GTP . . . D 2 -23.676 -28.578 -42.202 1 113.7 ? N2 GTP 602 A 1 HETATM 31 N N3 GTP . . . D 2 -25.139 -29.95 -40.676 1 102.02 ? N3 GTP 602 A 1 HETATM 32 C C4 GTP . . . D 2 -25.304 -31.069 -39.706 1 99.26 ? C4 GTP 602 A 1 HETATM 33 H H5' GTP . . . D 2 -28.196 -30.248 -41.583 1 110.73 ? H5' GTP 602 A 1 HETATM 34 H "H5''" GTP . . . D 2 -29.485 -30.868 -42.264 1 110.73 ? "H5''" GTP 602 A 1 HETATM 35 H H4' GTP . . . D 2 -30.431 -31.406 -40.223 1 113.99 ? H4' GTP 602 A 1 HETATM 36 H H3' GTP . . . D 2 -29.443 -29.128 -39.347 1 115.16 ? H3' GTP 602 A 1 HETATM 37 H H2' GTP . . . D 2 -27.435 -29.705 -38.58 1 116.45 ? H2' GTP 602 A 1 HETATM 38 H HO2' GTP . . . D 2 -27.81 -29.66 -36.49 1 116.29 ? HO2' GTP 602 A 1 HETATM 39 H H1' GTP . . . D 2 -27.89 -32.16 -37.911 1 117.04 ? H1' GTP 602 A 1 HETATM 40 H H8 GTP . . . D 2 -26.08 -33.257 -37.687 1 118.99 ? H8 GTP 602 A 1 HETATM 41 H HN1 GTP . . . D 2 -21.911 -30.325 -41.228 1 127.04 ? HN1 GTP 602 A 1 HETATM 42 H HN21 GTP . . . D 2 -22.907 -28.409 -42.548 1 137.01 ? HN21 GTP 602 A 1 HETATM 43 H HN22 GTP . . . D 2 -24.358 -28.1 -42.416 1 137.01 ? HN22 GTP 602 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #