data_6I10 # _model_server_result.job_id IaO6IbldpCnoxbJ_sp9nkw _model_server_result.datetime_utc '2024-10-19 11:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6I10 # _exptl.entry_id 6I10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]-5-[(3,4-dichlorophenyl)methyl]pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I10 _cell.length_a 61.667 _cell.length_b 91.839 _cell.length_c 97.062 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H14 Cl2 N4 O3 S' _chem_comp.formula_weight 413.278 _chem_comp.id GZK _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]-5-[(3,4-dichlorophenyl)methyl]pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAO SAN GZK doub 144 n n CAI NAH GZK doub 145 n y CAI CAJ GZK sing 146 n y NAH NAG GZK sing 147 n y OAA CAB GZK doub 148 n n CAJ CAB GZK sing 149 n n CAJ CAF GZK doub 150 n y SAN CAY GZK sing 151 n n SAN OAZ GZK doub 152 n n SAN CAM GZK sing 153 n n CAY CAK GZK sing 154 n n CAB NAC GZK sing 155 n n NAG CAF GZK sing 156 n y NAG CAK GZK sing 157 n n CAF NAE GZK sing 158 n n CAM CAL GZK sing 159 n n CAK CAL GZK sing 160 n n NAC CAP GZK sing 161 n n NAC CAD GZK sing 162 n n CAU CAV GZK doub 163 n y CAU CAQ GZK sing 164 n y CAP CAQ GZK sing 165 n n CAV CAW GZK sing 166 n y NAE CAD GZK doub 167 n n CAQ CAR GZK doub 168 n y CAW CL2 GZK sing 169 n n CAW CAS GZK doub 170 n y CAR CAS GZK sing 171 n y CAS CL1 GZK sing 172 n n CAL H1 GZK sing 173 n n CAL H2 GZK sing 174 n n CAM H3 GZK sing 175 n n CAM H4 GZK sing 176 n n CAY H5 GZK sing 177 n n CAY H6 GZK sing 178 n n CAK H7 GZK sing 179 n n CAI H8 GZK sing 180 n n CAD H9 GZK sing 181 n n CAP H10 GZK sing 182 n n CAP H11 GZK sing 183 n n CAR H12 GZK sing 184 n n CAV H13 GZK sing 185 n n CAU H14 GZK sing 186 n n # _atom_sites.entry_id 6I10 _atom_sites.fract_transf_matrix[1][1] 0.016216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GZK A 1 501 3 GZK DRG . C 3 ACT A 1 502 1 ACT ACT . D 4 EDO A 1 503 2 EDO EDO . E 4 EDO A 1 504 3 EDO EDO . F 4 EDO A 1 505 4 EDO EDO . G 5 HOH A 1 601 67 HOH HOH . G 5 HOH A 2 602 115 HOH HOH . G 5 HOH A 3 603 226 HOH HOH . G 5 HOH A 4 604 30 HOH HOH . G 5 HOH A 5 605 91 HOH HOH . G 5 HOH A 6 606 6 HOH HOH . G 5 HOH A 7 607 222 HOH HOH . G 5 HOH A 8 608 149 HOH HOH . G 5 HOH A 9 609 78 HOH HOH . G 5 HOH A 10 610 245 HOH HOH . G 5 HOH A 11 611 99 HOH HOH . G 5 HOH A 12 612 62 HOH HOH . G 5 HOH A 13 613 225 HOH HOH . G 5 HOH A 14 614 1 HOH HOH . G 5 HOH A 15 615 48 HOH HOH . G 5 HOH A 16 616 81 HOH HOH . G 5 HOH A 17 617 55 HOH HOH . G 5 HOH A 18 618 11 HOH HOH . G 5 HOH A 19 619 50 HOH HOH . G 5 HOH A 20 620 60 HOH HOH . G 5 HOH A 21 621 217 HOH HOH . G 5 HOH A 22 622 23 HOH HOH . G 5 HOH A 23 623 18 HOH HOH . G 5 HOH A 24 624 63 HOH HOH . G 5 HOH A 25 625 13 HOH HOH . G 5 HOH A 26 626 15 HOH HOH . G 5 HOH A 27 627 66 HOH HOH . G 5 HOH A 28 628 12 HOH HOH . G 5 HOH A 29 629 234 HOH HOH . G 5 HOH A 30 630 178 HOH HOH . G 5 HOH A 31 631 127 HOH HOH . G 5 HOH A 32 632 24 HOH HOH . G 5 HOH A 33 633 233 HOH HOH . G 5 HOH A 34 634 243 HOH HOH . G 5 HOH A 35 635 77 HOH HOH . G 5 HOH A 36 636 25 HOH HOH . G 5 HOH A 37 637 121 HOH HOH . G 5 HOH A 38 638 43 HOH HOH . G 5 HOH A 39 639 227 HOH HOH . G 5 HOH A 40 640 239 HOH HOH . G 5 HOH A 41 641 76 HOH HOH . G 5 HOH A 42 642 7 HOH HOH . G 5 HOH A 43 643 54 HOH HOH . G 5 HOH A 44 644 155 HOH HOH . G 5 HOH A 45 645 238 HOH HOH . G 5 HOH A 46 646 65 HOH HOH . G 5 HOH A 47 647 4 HOH HOH . G 5 HOH A 48 648 146 HOH HOH . G 5 HOH A 49 649 224 HOH HOH . G 5 HOH A 50 650 2 HOH HOH . G 5 HOH A 51 651 17 HOH HOH . G 5 HOH A 52 652 22 HOH HOH . G 5 HOH A 53 653 184 HOH HOH . G 5 HOH A 54 654 101 HOH HOH . G 5 HOH A 55 655 85 HOH HOH . G 5 HOH A 56 656 240 HOH HOH . G 5 HOH A 57 657 8 HOH HOH . G 5 HOH A 58 658 27 HOH HOH . G 5 HOH A 59 659 3 HOH HOH . G 5 HOH A 60 660 69 HOH HOH . G 5 HOH A 61 661 80 HOH HOH . G 5 HOH A 62 662 10 HOH HOH . G 5 HOH A 63 663 98 HOH HOH . G 5 HOH A 64 664 16 HOH HOH . G 5 HOH A 65 665 246 HOH HOH . G 5 HOH A 66 666 19 HOH HOH . G 5 HOH A 67 667 137 HOH HOH . G 5 HOH A 68 668 38 HOH HOH . G 5 HOH A 69 669 90 HOH HOH . G 5 HOH A 70 670 21 HOH HOH . G 5 HOH A 71 671 122 HOH HOH . G 5 HOH A 72 672 61 HOH HOH . G 5 HOH A 73 673 14 HOH HOH . G 5 HOH A 74 674 52 HOH HOH . G 5 HOH A 75 675 26 HOH HOH . G 5 HOH A 76 676 235 HOH HOH . G 5 HOH A 77 677 5 HOH HOH . G 5 HOH A 78 678 145 HOH HOH . G 5 HOH A 79 679 118 HOH HOH . G 5 HOH A 80 680 244 HOH HOH . G 5 HOH A 81 681 111 HOH HOH . G 5 HOH A 82 682 237 HOH HOH . G 5 HOH A 83 683 57 HOH HOH . G 5 HOH A 84 684 68 HOH HOH . G 5 HOH A 85 685 100 HOH HOH . G 5 HOH A 86 686 40 HOH HOH . G 5 HOH A 87 687 44 HOH HOH . G 5 HOH A 88 688 28 HOH HOH . G 5 HOH A 89 689 179 HOH HOH . G 5 HOH A 90 690 56 HOH HOH . G 5 HOH A 91 691 176 HOH HOH . G 5 HOH A 92 692 49 HOH HOH . G 5 HOH A 93 693 223 HOH HOH . G 5 HOH A 94 694 124 HOH HOH . G 5 HOH A 95 695 126 HOH HOH . G 5 HOH A 96 696 241 HOH HOH . G 5 HOH A 97 697 236 HOH HOH . G 5 HOH A 98 698 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAL GZK . . . B 2 2.843 -2.28 -12.168 1 51.92 ? CAL GZK 501 A 1 HETATM 2 C CAM GZK . . . B 2 3.873 -1.907 -13.172 1 53.13 ? CAM GZK 501 A 1 HETATM 3 S SAN GZK . . . B 2 3.668 -3.461 -14.101 1 54.86 ? SAN GZK 501 A 1 HETATM 4 O OAO GZK . . . B 2 4.091 -3.128 -15.47 1 56.73 ? OAO GZK 501 A 1 HETATM 5 O OAZ GZK . . . B 2 4.363 -4.594 -13.408 1 56.41 ? OAZ GZK 501 A 1 HETATM 6 C CAY GZK . . . B 2 1.886 -3.702 -14.038 1 52.76 ? CAY GZK 501 A 1 HETATM 7 C CAK GZK . . . B 2 1.613 -2.568 -13.036 1 50.67 ? CAK GZK 501 A 1 HETATM 8 N NAG GZK . . . B 2 1.167 -1.389 -13.759 1 47.37 ? NAG GZK 501 A 1 HETATM 9 N NAH GZK . . . B 2 1.581 -0.862 -14.944 1 47.01 ? NAH GZK 501 A 1 HETATM 10 C CAI GZK . . . B 2 0.786 0.193 -15.2 1 44.86 ? CAI GZK 501 A 1 HETATM 11 C CAJ GZK . . . B 2 -0.125 0.33 -14.233 1 44.12 ? CAJ GZK 501 A 1 HETATM 12 C CAB GZK . . . B 2 -1.147 1.228 -13.998 1 43.04 ? CAB GZK 501 A 1 HETATM 13 O OAA GZK . . . B 2 -1.404 2.152 -14.786 1 41.84 ? OAA GZK 501 A 1 HETATM 14 C CAF GZK . . . B 2 0.151 -0.661 -13.297 1 45.32 ? CAF GZK 501 A 1 HETATM 15 N NAE GZK . . . B 2 -0.576 -0.828 -12.193 1 44.48 ? NAE GZK 501 A 1 HETATM 16 C CAD GZK . . . B 2 -1.582 0.008 -11.91 1 43.8 ? CAD GZK 501 A 1 HETATM 17 N NAC GZK . . . B 2 -1.912 1.111 -12.773 1 42.74 ? NAC GZK 501 A 1 HETATM 18 C CAP GZK . . . B 2 -3.029 2.073 -12.463 1 41.45 ? CAP GZK 501 A 1 HETATM 19 C CAQ GZK . . . B 2 -2.288 3.221 -11.891 1 41.04 ? CAQ GZK 501 A 1 HETATM 20 C CAR GZK . . . B 2 -1.94 3.254 -10.519 1 41.68 ? CAR GZK 501 A 1 HETATM 21 C CAS GZK . . . B 2 -1.195 4.323 -10.037 1 41.61 ? CAS GZK 501 A 1 HETATM 22 CL CL1 GZK . . . B 2 -0.753 4.482 -8.381 1 43.07 ? CL1 GZK 501 A 1 HETATM 23 C CAW GZK . . . B 2 -0.828 5.352 -10.842 1 41.06 ? CAW GZK 501 A 1 HETATM 24 CL CL2 GZK . . . B 2 0.11 6.623 -10.139 1 42.19 ? CL2 GZK 501 A 1 HETATM 25 C CAV GZK . . . B 2 -1.168 5.311 -12.211 1 41.21 ? CAV GZK 501 A 1 HETATM 26 C CAU GZK . . . B 2 -1.91 4.243 -12.712 1 40.62 ? CAU GZK 501 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #