data_6I13 # _model_server_result.job_id xAjjdbyRetX-cBkanwEbQw _model_server_result.datetime_utc '2024-11-05 06:53:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6I13 # _exptl.entry_id 6I13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I13 _cell.length_a 60.52 _cell.length_b 92.24 _cell.length_c 99.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 6I13 _atom_sites.fract_transf_matrix[1][1] 0.016523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 501 1 ACT ACT . C 3 EDO A 1 502 2 EDO EDO . D 3 EDO A 1 503 3 EDO EDO . E 3 EDO A 1 504 4 EDO EDO . F 4 H0Q A 1 505 3 H0Q DRG . G 5 HOH A 1 601 505 HOH HOH . G 5 HOH A 2 602 146 HOH HOH . G 5 HOH A 3 603 403 HOH HOH . G 5 HOH A 4 604 269 HOH HOH . G 5 HOH A 5 605 33 HOH HOH . G 5 HOH A 6 606 51 HOH HOH . G 5 HOH A 7 607 445 HOH HOH . G 5 HOH A 8 608 336 HOH HOH . G 5 HOH A 9 609 58 HOH HOH . G 5 HOH A 10 610 291 HOH HOH . G 5 HOH A 11 611 101 HOH HOH . G 5 HOH A 12 612 288 HOH HOH . G 5 HOH A 13 613 223 HOH HOH . G 5 HOH A 14 614 69 HOH HOH . G 5 HOH A 15 615 397 HOH HOH . G 5 HOH A 16 616 21 HOH HOH . G 5 HOH A 17 617 120 HOH HOH . G 5 HOH A 18 618 304 HOH HOH . G 5 HOH A 19 619 71 HOH HOH . G 5 HOH A 20 620 20 HOH HOH . G 5 HOH A 21 621 405 HOH HOH . G 5 HOH A 22 622 91 HOH HOH . G 5 HOH A 23 623 368 HOH HOH . G 5 HOH A 24 624 510 HOH HOH . G 5 HOH A 25 625 148 HOH HOH . G 5 HOH A 26 626 106 HOH HOH . G 5 HOH A 27 627 26 HOH HOH . G 5 HOH A 28 628 294 HOH HOH . G 5 HOH A 29 629 162 HOH HOH . G 5 HOH A 30 630 422 HOH HOH . G 5 HOH A 31 631 30 HOH HOH . G 5 HOH A 32 632 200 HOH HOH . G 5 HOH A 33 633 323 HOH HOH . G 5 HOH A 34 634 45 HOH HOH . G 5 HOH A 35 635 11 HOH HOH . G 5 HOH A 36 636 164 HOH HOH . G 5 HOH A 37 637 204 HOH HOH . G 5 HOH A 38 638 95 HOH HOH . G 5 HOH A 39 639 417 HOH HOH . G 5 HOH A 40 640 2 HOH HOH . G 5 HOH A 41 641 522 HOH HOH . G 5 HOH A 42 642 402 HOH HOH . G 5 HOH A 43 643 297 HOH HOH . G 5 HOH A 44 644 54 HOH HOH . G 5 HOH A 45 645 64 HOH HOH . G 5 HOH A 46 646 116 HOH HOH . G 5 HOH A 47 647 236 HOH HOH . G 5 HOH A 48 648 97 HOH HOH . G 5 HOH A 49 649 473 HOH HOH . G 5 HOH A 50 650 23 HOH HOH . G 5 HOH A 51 651 202 HOH HOH . G 5 HOH A 52 652 31 HOH HOH . G 5 HOH A 53 653 14 HOH HOH . G 5 HOH A 54 654 135 HOH HOH . G 5 HOH A 55 655 131 HOH HOH . G 5 HOH A 56 656 335 HOH HOH . G 5 HOH A 57 657 8 HOH HOH . G 5 HOH A 58 658 283 HOH HOH . G 5 HOH A 59 659 436 HOH HOH . G 5 HOH A 60 660 413 HOH HOH . G 5 HOH A 61 661 509 HOH HOH . G 5 HOH A 62 662 126 HOH HOH . G 5 HOH A 63 663 53 HOH HOH . G 5 HOH A 64 664 523 HOH HOH . G 5 HOH A 65 665 1 HOH HOH . G 5 HOH A 66 666 312 HOH HOH . G 5 HOH A 67 667 13 HOH HOH . G 5 HOH A 68 668 388 HOH HOH . G 5 HOH A 69 669 410 HOH HOH . G 5 HOH A 70 670 149 HOH HOH . G 5 HOH A 71 671 78 HOH HOH . G 5 HOH A 72 672 524 HOH HOH . G 5 HOH A 73 673 145 HOH HOH . G 5 HOH A 74 674 109 HOH HOH . G 5 HOH A 75 675 525 HOH HOH . G 5 HOH A 76 676 114 HOH HOH . G 5 HOH A 77 677 347 HOH HOH . G 5 HOH A 78 678 212 HOH HOH . G 5 HOH A 79 679 113 HOH HOH . G 5 HOH A 80 680 110 HOH HOH . G 5 HOH A 81 681 426 HOH HOH . G 5 HOH A 82 682 275 HOH HOH . G 5 HOH A 83 683 299 HOH HOH . G 5 HOH A 84 684 374 HOH HOH . G 5 HOH A 85 685 438 HOH HOH . G 5 HOH A 86 686 128 HOH HOH . G 5 HOH A 87 687 122 HOH HOH . G 5 HOH A 88 688 286 HOH HOH . G 5 HOH A 89 689 309 HOH HOH . G 5 HOH A 90 690 386 HOH HOH . G 5 HOH A 91 691 142 HOH HOH . G 5 HOH A 92 692 12 HOH HOH . G 5 HOH A 93 693 387 HOH HOH . G 5 HOH A 94 694 301 HOH HOH . G 5 HOH A 95 695 18 HOH HOH . G 5 HOH A 96 696 15 HOH HOH . G 5 HOH A 97 697 63 HOH HOH . G 5 HOH A 98 698 429 HOH HOH . G 5 HOH A 99 699 160 HOH HOH . G 5 HOH A 100 700 203 HOH HOH . G 5 HOH A 101 701 225 HOH HOH . G 5 HOH A 102 702 263 HOH HOH . G 5 HOH A 103 703 198 HOH HOH . G 5 HOH A 104 704 41 HOH HOH . G 5 HOH A 105 705 17 HOH HOH . G 5 HOH A 106 706 19 HOH HOH . G 5 HOH A 107 707 500 HOH HOH . G 5 HOH A 108 708 28 HOH HOH . G 5 HOH A 109 709 92 HOH HOH . G 5 HOH A 110 710 379 HOH HOH . G 5 HOH A 111 711 16 HOH HOH . G 5 HOH A 112 712 395 HOH HOH . G 5 HOH A 113 713 272 HOH HOH . G 5 HOH A 114 714 428 HOH HOH . G 5 HOH A 115 715 424 HOH HOH . G 5 HOH A 116 716 181 HOH HOH . G 5 HOH A 117 717 360 HOH HOH . G 5 HOH A 118 718 293 HOH HOH . G 5 HOH A 119 719 93 HOH HOH . G 5 HOH A 120 720 441 HOH HOH . G 5 HOH A 121 721 94 HOH HOH . G 5 HOH A 122 722 159 HOH HOH . G 5 HOH A 123 723 165 HOH HOH . G 5 HOH A 124 724 214 HOH HOH . G 5 HOH A 125 725 184 HOH HOH . G 5 HOH A 126 726 98 HOH HOH . G 5 HOH A 127 727 209 HOH HOH . G 5 HOH A 128 728 22 HOH HOH . G 5 HOH A 129 729 137 HOH HOH . G 5 HOH A 130 730 330 HOH HOH . G 5 HOH A 131 731 316 HOH HOH . G 5 HOH A 132 732 163 HOH HOH . G 5 HOH A 133 733 358 HOH HOH . G 5 HOH A 134 734 390 HOH HOH . G 5 HOH A 135 735 329 HOH HOH . G 5 HOH A 136 736 139 HOH HOH . G 5 HOH A 137 737 425 HOH HOH . G 5 HOH A 138 738 32 HOH HOH . G 5 HOH A 139 739 322 HOH HOH . G 5 HOH A 140 740 96 HOH HOH . G 5 HOH A 141 741 140 HOH HOH . G 5 HOH A 142 742 62 HOH HOH . G 5 HOH A 143 743 427 HOH HOH . G 5 HOH A 144 744 430 HOH HOH . G 5 HOH A 145 745 155 HOH HOH . G 5 HOH A 146 746 421 HOH HOH . G 5 HOH A 147 747 344 HOH HOH . G 5 HOH A 148 748 206 HOH HOH . G 5 HOH A 149 749 339 HOH HOH . G 5 HOH A 150 750 88 HOH HOH . G 5 HOH A 151 751 183 HOH HOH . G 5 HOH A 152 752 72 HOH HOH . G 5 HOH A 153 753 226 HOH HOH . G 5 HOH A 154 754 521 HOH HOH . G 5 HOH A 155 755 350 HOH HOH . G 5 HOH A 156 756 50 HOH HOH . G 5 HOH A 157 757 27 HOH HOH . G 5 HOH A 158 758 280 HOH HOH . G 5 HOH A 159 759 59 HOH HOH . G 5 HOH A 160 760 29 HOH HOH . G 5 HOH A 161 761 517 HOH HOH . G 5 HOH A 162 762 328 HOH HOH . G 5 HOH A 163 763 144 HOH HOH . G 5 HOH A 164 764 331 HOH HOH . G 5 HOH A 165 765 423 HOH HOH . G 5 HOH A 166 766 412 HOH HOH . G 5 HOH A 167 767 82 HOH HOH . G 5 HOH A 168 768 439 HOH HOH . G 5 HOH A 169 769 507 HOH HOH . G 5 HOH A 170 770 60 HOH HOH . G 5 HOH A 171 771 242 HOH HOH . G 5 HOH A 172 772 253 HOH HOH . G 5 HOH A 173 773 343 HOH HOH . G 5 HOH A 174 774 271 HOH HOH . G 5 HOH A 175 775 39 HOH HOH . G 5 HOH A 176 776 249 HOH HOH . G 5 HOH A 177 777 85 HOH HOH . G 5 HOH A 178 778 341 HOH HOH . G 5 HOH A 179 779 354 HOH HOH . G 5 HOH A 180 780 161 HOH HOH . G 5 HOH A 181 781 463 HOH HOH . G 5 HOH A 182 782 68 HOH HOH . G 5 HOH A 183 783 176 HOH HOH . G 5 HOH A 184 784 273 HOH HOH . G 5 HOH A 185 785 418 HOH HOH . G 5 HOH A 186 786 321 HOH HOH . G 5 HOH A 187 787 416 HOH HOH . G 5 HOH A 188 788 319 HOH HOH . G 5 HOH A 189 789 333 HOH HOH . G 5 HOH A 190 790 147 HOH HOH . G 5 HOH A 191 791 356 HOH HOH . G 5 HOH A 192 792 451 HOH HOH . G 5 HOH A 193 793 415 HOH HOH . G 5 HOH A 194 794 307 HOH HOH . G 5 HOH A 195 795 370 HOH HOH . G 5 HOH A 196 796 351 HOH HOH . G 5 HOH A 197 797 458 HOH HOH . G 5 HOH A 198 798 199 HOH HOH . G 5 HOH A 199 799 25 HOH HOH . G 5 HOH A 200 800 117 HOH HOH . G 5 HOH A 201 801 296 HOH HOH . G 5 HOH A 202 802 305 HOH HOH . G 5 HOH A 203 803 36 HOH HOH . G 5 HOH A 204 804 255 HOH HOH . G 5 HOH A 205 805 353 HOH HOH . G 5 HOH A 206 806 76 HOH HOH . G 5 HOH A 207 807 326 HOH HOH . G 5 HOH A 208 808 380 HOH HOH . G 5 HOH A 209 809 124 HOH HOH . G 5 HOH A 210 810 102 HOH HOH . G 5 HOH A 211 811 324 HOH HOH . G 5 HOH A 212 812 399 HOH HOH . G 5 HOH A 213 813 467 HOH HOH . G 5 HOH A 214 814 526 HOH HOH . G 5 HOH A 215 815 208 HOH HOH . G 5 HOH A 216 816 290 HOH HOH . G 5 HOH A 217 817 40 HOH HOH . G 5 HOH A 218 818 513 HOH HOH . G 5 HOH A 219 819 231 HOH HOH . G 5 HOH A 220 820 138 HOH HOH . G 5 HOH A 221 821 311 HOH HOH . G 5 HOH A 222 822 364 HOH HOH . G 5 HOH A 223 823 127 HOH HOH . G 5 HOH A 224 824 103 HOH HOH . G 5 HOH A 225 825 512 HOH HOH . G 5 HOH A 226 826 230 HOH HOH . G 5 HOH A 227 827 392 HOH HOH . G 5 HOH A 228 828 130 HOH HOH . G 5 HOH A 229 829 5 HOH HOH . G 5 HOH A 230 830 313 HOH HOH . G 5 HOH A 231 831 89 HOH HOH . G 5 HOH A 232 832 404 HOH HOH . G 5 HOH A 233 833 170 HOH HOH . G 5 HOH A 234 834 55 HOH HOH . G 5 HOH A 235 835 276 HOH HOH . G 5 HOH A 236 836 446 HOH HOH . G 5 HOH A 237 837 381 HOH HOH . G 5 HOH A 238 838 265 HOH HOH . G 5 HOH A 239 839 384 HOH HOH . G 5 HOH A 240 840 218 HOH HOH . G 5 HOH A 241 841 154 HOH HOH . G 5 HOH A 242 842 520 HOH HOH . G 5 HOH A 243 843 455 HOH HOH . G 5 HOH A 244 844 518 HOH HOH . G 5 HOH A 245 845 190 HOH HOH . G 5 HOH A 246 846 125 HOH HOH . G 5 HOH A 247 847 9 HOH HOH . G 5 HOH A 248 848 516 HOH HOH . G 5 HOH A 249 849 506 HOH HOH . G 5 HOH A 250 850 278 HOH HOH . G 5 HOH A 251 851 107 HOH HOH . G 5 HOH A 252 852 342 HOH HOH . G 5 HOH A 253 853 400 HOH HOH . G 5 HOH A 254 854 270 HOH HOH . G 5 HOH A 255 855 514 HOH HOH . G 5 HOH A 256 856 515 HOH HOH . G 5 HOH A 257 857 511 HOH HOH . G 5 HOH A 258 858 105 HOH HOH . G 5 HOH A 259 859 295 HOH HOH . G 5 HOH A 260 860 355 HOH HOH . G 5 HOH A 261 861 398 HOH HOH . G 5 HOH A 262 862 508 HOH HOH . G 5 HOH A 263 863 519 HOH HOH . G 5 HOH A 264 864 462 HOH HOH . G 5 HOH A 265 865 382 HOH HOH . G 5 HOH A 266 866 419 HOH HOH . G 5 HOH A 267 867 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 9.656 33.908 41.93 1 57.7 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 3 10.591 33.764 40.871 1 56.59 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 3 9.786 32.908 43.109 1 58.58 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 3 10.993 32.983 43.937 1 57.7 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #