data_6I1E # _model_server_result.job_id EeHxMAngnQiNdc3dKrtBpg _model_server_result.datetime_utc '2024-11-01 22:35:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6i1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6I1E # _exptl.entry_id 6I1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.42 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{1-[2-AMINO-2-(4-HYDROXY-PHENYL)-ACETYLAMINO]-2-OXO-ETHYL}-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6I1E _cell.length_a 68.44 _cell.length_b 82.78 _cell.length_c 89.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6I1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 252 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 294 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id AXL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AXL _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.518 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H21 N3 O5 S' _chem_comp.formula_weight 367.42 _chem_comp.id AXL _chem_comp.mon_nstd_flag . _chem_comp.name '2-{1-[2-AMINO-2-(4-HYDROXY-PHENYL)-ACETYLAMINO]-2-OXO-ETHYL}-5,5-DIMETHYL-THIAZOLIDINE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMOXICILLIN, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AXL doub 70 n n C1 C2 AXL sing 71 n n C1 HC1 AXL sing 72 n n C2 C3 AXL sing 73 n n C2 N8 AXL sing 74 n n C2 HC2 AXL sing 75 n n C3 S4 AXL sing 76 n n C3 N7 AXL sing 77 n n C3 HC3 AXL sing 78 n n S4 C5 AXL sing 79 n n C5 C51 AXL sing 80 n n C5 C52 AXL sing 81 n n C5 C6 AXL sing 82 n n C51 H511 AXL sing 83 n n C51 H512 AXL sing 84 n n C51 H513 AXL sing 85 n n C52 H521 AXL sing 86 n n C52 H522 AXL sing 87 n n C52 H523 AXL sing 88 n n C6 C61 AXL sing 89 n n C6 N7 AXL sing 90 n n C6 HC6 AXL sing 91 n n C61 O62 AXL sing 92 n n C61 O63 AXL doub 93 n n O62 H62O AXL sing 94 n n N7 HN7 AXL sing 95 n n N8 C9 AXL sing 96 n n N8 HN8 AXL sing 97 n n C9 O91 AXL doub 98 n n C9 C10 AXL sing 99 n n C10 N11 AXL sing 100 n n C10 C12 AXL sing 101 n n C10 H10 AXL sing 102 n n N11 H111 AXL sing 103 n n N11 H112 AXL sing 104 n n C12 C13 AXL doub 105 n y C12 C17 AXL sing 106 n y C13 C14 AXL sing 107 n y C13 H13 AXL sing 108 n n C14 C15 AXL doub 109 n y C14 H14 AXL sing 110 n n C15 C16 AXL sing 111 n y C15 O18 AXL sing 112 n n C16 C17 AXL doub 113 n y C16 H16 AXL sing 114 n n C17 H17 AXL sing 115 n n O18 H18O AXL sing 116 n n # _atom_sites.entry_id 6I1E _atom_sites.fract_transf_matrix[1][1] 0.014611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AXL A 1 701 701 AXL AXL . C 3 HOH A 1 801 148 HOH HOH . C 3 HOH A 2 802 176 HOH HOH . C 3 HOH A 3 803 166 HOH HOH . C 3 HOH A 4 804 34 HOH HOH . C 3 HOH A 5 805 155 HOH HOH . C 3 HOH A 6 806 168 HOH HOH . C 3 HOH A 7 807 82 HOH HOH . C 3 HOH A 8 808 157 HOH HOH . C 3 HOH A 9 809 70 HOH HOH . C 3 HOH A 10 810 137 HOH HOH . C 3 HOH A 11 811 145 HOH HOH . C 3 HOH A 12 812 163 HOH HOH . C 3 HOH A 13 813 79 HOH HOH . C 3 HOH A 14 814 113 HOH HOH . C 3 HOH A 15 815 3 HOH HOH . C 3 HOH A 16 816 28 HOH HOH . C 3 HOH A 17 817 150 HOH HOH . C 3 HOH A 18 818 2 HOH HOH . C 3 HOH A 19 819 72 HOH HOH . C 3 HOH A 20 820 41 HOH HOH . C 3 HOH A 21 821 156 HOH HOH . C 3 HOH A 22 822 30 HOH HOH . C 3 HOH A 23 823 173 HOH HOH . C 3 HOH A 24 824 115 HOH HOH . C 3 HOH A 25 825 20 HOH HOH . C 3 HOH A 26 826 22 HOH HOH . C 3 HOH A 27 827 119 HOH HOH . C 3 HOH A 28 828 58 HOH HOH . C 3 HOH A 29 829 69 HOH HOH . C 3 HOH A 30 830 116 HOH HOH . C 3 HOH A 31 831 31 HOH HOH . C 3 HOH A 32 832 4 HOH HOH . C 3 HOH A 33 833 122 HOH HOH . C 3 HOH A 34 834 66 HOH HOH . C 3 HOH A 35 835 138 HOH HOH . C 3 HOH A 36 836 6 HOH HOH . C 3 HOH A 37 837 1 HOH HOH . C 3 HOH A 38 838 165 HOH HOH . C 3 HOH A 39 839 47 HOH HOH . C 3 HOH A 40 840 125 HOH HOH . C 3 HOH A 41 841 15 HOH HOH . C 3 HOH A 42 842 10 HOH HOH . C 3 HOH A 43 843 80 HOH HOH . C 3 HOH A 44 844 14 HOH HOH . C 3 HOH A 45 845 107 HOH HOH . C 3 HOH A 46 846 102 HOH HOH . C 3 HOH A 47 847 48 HOH HOH . C 3 HOH A 48 848 13 HOH HOH . C 3 HOH A 49 849 89 HOH HOH . C 3 HOH A 50 850 85 HOH HOH . C 3 HOH A 51 851 167 HOH HOH . C 3 HOH A 52 852 103 HOH HOH . C 3 HOH A 53 853 108 HOH HOH . C 3 HOH A 54 854 160 HOH HOH . C 3 HOH A 55 855 44 HOH HOH . C 3 HOH A 56 856 50 HOH HOH . C 3 HOH A 57 857 40 HOH HOH . C 3 HOH A 58 858 174 HOH HOH . C 3 HOH A 59 859 144 HOH HOH . C 3 HOH A 60 860 52 HOH HOH . C 3 HOH A 61 861 27 HOH HOH . C 3 HOH A 62 862 130 HOH HOH . C 3 HOH A 63 863 110 HOH HOH . C 3 HOH A 64 864 158 HOH HOH . C 3 HOH A 65 865 7 HOH HOH . C 3 HOH A 66 866 100 HOH HOH . C 3 HOH A 67 867 73 HOH HOH . C 3 HOH A 68 868 98 HOH HOH . C 3 HOH A 69 869 77 HOH HOH . C 3 HOH A 70 870 132 HOH HOH . C 3 HOH A 71 871 161 HOH HOH . C 3 HOH A 72 872 118 HOH HOH . C 3 HOH A 73 873 37 HOH HOH . C 3 HOH A 74 874 67 HOH HOH . C 3 HOH A 75 875 23 HOH HOH . C 3 HOH A 76 876 29 HOH HOH . C 3 HOH A 77 877 164 HOH HOH . C 3 HOH A 78 878 33 HOH HOH . C 3 HOH A 79 879 83 HOH HOH . C 3 HOH A 80 880 19 HOH HOH . C 3 HOH A 81 881 54 HOH HOH . C 3 HOH A 82 882 25 HOH HOH . C 3 HOH A 83 883 129 HOH HOH . C 3 HOH A 84 884 78 HOH HOH . C 3 HOH A 85 885 97 HOH HOH . C 3 HOH A 86 886 39 HOH HOH . C 3 HOH A 87 887 42 HOH HOH . C 3 HOH A 88 888 60 HOH HOH . C 3 HOH A 89 889 9 HOH HOH . C 3 HOH A 90 890 45 HOH HOH . C 3 HOH A 91 891 172 HOH HOH . C 3 HOH A 92 892 134 HOH HOH . C 3 HOH A 93 893 64 HOH HOH . C 3 HOH A 94 894 133 HOH HOH . C 3 HOH A 95 895 170 HOH HOH . C 3 HOH A 96 896 101 HOH HOH . C 3 HOH A 97 897 38 HOH HOH . C 3 HOH A 98 898 56 HOH HOH . C 3 HOH A 99 899 26 HOH HOH . C 3 HOH A 100 900 105 HOH HOH . C 3 HOH A 101 901 111 HOH HOH . C 3 HOH A 102 902 18 HOH HOH . C 3 HOH A 103 903 127 HOH HOH . C 3 HOH A 104 904 11 HOH HOH . C 3 HOH A 105 905 93 HOH HOH . C 3 HOH A 106 906 17 HOH HOH . C 3 HOH A 107 907 12 HOH HOH . C 3 HOH A 108 908 32 HOH HOH . C 3 HOH A 109 909 81 HOH HOH . C 3 HOH A 110 910 91 HOH HOH . C 3 HOH A 111 911 46 HOH HOH . C 3 HOH A 112 912 159 HOH HOH . C 3 HOH A 113 913 76 HOH HOH . C 3 HOH A 114 914 49 HOH HOH . C 3 HOH A 115 915 75 HOH HOH . C 3 HOH A 116 916 68 HOH HOH . C 3 HOH A 117 917 131 HOH HOH . C 3 HOH A 118 918 86 HOH HOH . C 3 HOH A 119 919 21 HOH HOH . C 3 HOH A 120 920 88 HOH HOH . C 3 HOH A 121 921 36 HOH HOH . C 3 HOH A 122 922 123 HOH HOH . C 3 HOH A 123 923 51 HOH HOH . C 3 HOH A 124 924 128 HOH HOH . C 3 HOH A 125 925 120 HOH HOH . C 3 HOH A 126 926 53 HOH HOH . C 3 HOH A 127 927 175 HOH HOH . C 3 HOH A 128 928 99 HOH HOH . C 3 HOH A 129 929 55 HOH HOH . C 3 HOH A 130 930 121 HOH HOH . C 3 HOH A 131 931 87 HOH HOH . C 3 HOH A 132 932 124 HOH HOH . C 3 HOH A 133 933 92 HOH HOH . C 3 HOH A 134 934 94 HOH HOH . C 3 HOH A 135 935 71 HOH HOH . C 3 HOH A 136 936 162 HOH HOH . C 3 HOH A 137 937 95 HOH HOH . C 3 HOH A 138 938 126 HOH HOH . C 3 HOH A 139 939 59 HOH HOH . C 3 HOH A 140 940 153 HOH HOH . C 3 HOH A 141 941 8 HOH HOH . C 3 HOH A 142 942 24 HOH HOH . C 3 HOH A 143 943 16 HOH HOH . C 3 HOH A 144 944 146 HOH HOH . C 3 HOH A 145 945 57 HOH HOH . C 3 HOH A 146 946 106 HOH HOH . C 3 HOH A 147 947 169 HOH HOH . C 3 HOH A 148 948 62 HOH HOH . C 3 HOH A 149 949 84 HOH HOH . C 3 HOH A 150 950 65 HOH HOH . C 3 HOH A 151 951 5 HOH HOH . C 3 HOH A 152 952 112 HOH HOH . C 3 HOH A 153 953 61 HOH HOH . C 3 HOH A 154 954 109 HOH HOH . C 3 HOH A 155 955 43 HOH HOH . C 3 HOH A 156 956 141 HOH HOH . C 3 HOH A 157 957 74 HOH HOH . C 3 HOH A 158 958 114 HOH HOH . C 3 HOH A 159 959 171 HOH HOH . C 3 HOH A 160 960 136 HOH HOH . C 3 HOH A 161 961 154 HOH HOH . C 3 HOH A 162 962 104 HOH HOH . C 3 HOH A 163 963 149 HOH HOH . C 3 HOH A 164 964 63 HOH HOH . C 3 HOH A 165 965 96 HOH HOH . C 3 HOH A 166 966 151 HOH HOH . C 3 HOH A 167 967 142 HOH HOH . C 3 HOH A 168 968 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AXL . . . B 2 -6.271 37.103 -16.968 1 21.83 ? C1 AXL 701 A 1 HETATM 2 O O1 AXL . . . B 2 -5.876 36.774 -15.848 1 20.3 ? O1 AXL 701 A 1 HETATM 3 C C2 AXL . . . B 2 -6.273 38.525 -17.487 1 22.81 ? C2 AXL 701 A 1 HETATM 4 C C3 AXL . . . B 2 -4.989 38.828 -18.291 1 22.76 ? C3 AXL 701 A 1 HETATM 5 S S4 AXL . . . B 2 -4.292 40.446 -18.089 1 23.74 ? S4 AXL 701 A 1 HETATM 6 C C5 AXL . . . B 2 -2.838 40.031 -17.194 1 23.89 ? C5 AXL 701 A 1 HETATM 7 C C51 AXL . . . B 2 -2.668 40.957 -15.995 1 23.63 ? C51 AXL 701 A 1 HETATM 8 C C52 AXL . . . B 2 -1.624 40.162 -18.112 1 24.46 ? C52 AXL 701 A 1 HETATM 9 C C6 AXL . . . B 2 -3.128 38.588 -16.775 1 23.42 ? C6 AXL 701 A 1 HETATM 10 C C61 AXL . . . B 2 -1.907 37.773 -16.434 1 24.74 ? C61 AXL 701 A 1 HETATM 11 O O62 AXL . . . B 2 -1.455 37.888 -15.273 1 24.26 ? O62 AXL 701 A 1 HETATM 12 O O63 AXL . . . B 2 -1.41 37.013 -17.297 1 25.61 ? O63 AXL 701 A 1 HETATM 13 N N7 AXL . . . B 2 -3.916 37.922 -17.846 1 23.45 ? N7 AXL 701 A 1 HETATM 14 N N8 AXL . . . B 2 -6.489 39.382 -16.347 1 22.56 ? N8 AXL 701 A 1 HETATM 15 C C9 AXL . . . B 2 -7.29 40.426 -16.506 1 23.38 ? C9 AXL 701 A 1 HETATM 16 O O91 AXL . . . B 2 -7.664 40.79 -17.604 1 22.96 ? O91 AXL 701 A 1 HETATM 17 C C10 AXL . . . B 2 -7.699 41.155 -15.26 1 24.25 ? C10 AXL 701 A 1 HETATM 18 N N11 AXL . . . B 2 -9.087 41.676 -15.365 1 24.67 ? N11 AXL 701 A 1 HETATM 19 C C12 AXL . . . B 2 -6.757 42.251 -14.942 1 25.83 ? C12 AXL 701 A 1 HETATM 20 C C13 AXL . . . B 2 -6.247 42.361 -13.647 1 26.9 ? C13 AXL 701 A 1 HETATM 21 C C14 AXL . . . B 2 -5.364 43.396 -13.317 1 28.63 ? C14 AXL 701 A 1 HETATM 22 C C15 AXL . . . B 2 -5.009 44.327 -14.294 1 28.46 ? C15 AXL 701 A 1 HETATM 23 C C16 AXL . . . B 2 -5.526 44.223 -15.582 1 27.98 ? C16 AXL 701 A 1 HETATM 24 C C17 AXL . . . B 2 -6.401 43.187 -15.914 1 27.21 ? C17 AXL 701 A 1 HETATM 25 O O18 AXL . . . B 2 -4.152 45.349 -14 1 30.71 ? O18 AXL 701 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #